data_5HRE # _model_server_result.job_id JBQU-sHZUfjSFVtsJUmxQg _model_server_result.datetime_utc '2025-06-21 15:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hre # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 5HRE # _exptl.entry_id 5HRE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.61 _cell.angle_gamma 90 _cell.entry_id 5HRE _cell.length_a 64.144 _cell.length_b 88.785 _cell.length_c 43.349 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HRE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 85 A CYS 81 1_555 A SG CYS 90 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A OD1 ASP 53 A ASP 49 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A OD2 ASP 55 A ASP 51 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 C MN MN . A MN 201 1_555 D O2 FMT . A FMT 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc4 C MN MN . A MN 201 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc5 C MN MN . A MN 201 1_555 G O HOH . A HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 C MN MN . A MN 201 2_555 B OP1 DT 9 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? hydrog WATSON-CRICK hydrog1 B N1 DA 2 B DA 2 1_555 B N3 DT 9 B DT 9 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N6 DA 2 B DA 2 1_555 B O4 DT 9 B DT 9 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 3 B DG 3 1_555 B N3 DC 8 B DC 8 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 3 B DG 3 1_555 B O2 DC 8 B DC 8 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 3 B DG 3 1_555 B N4 DC 8 B DC 8 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 4 B DG 4 1_555 B N3 DC 7 B DC 7 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 4 B DG 4 1_555 B O2 DC 7 B DC 7 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 4 B DG 4 1_555 B N4 DC 7 B DC 7 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DA 5 B DA 5 1_555 B N3 DT 6 B DT 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N6 DA 5 B DA 5 1_555 B O4 DT 6 B DT 6 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N3 DT 6 B DT 6 1_555 B N1 DA 5 B DA 5 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O4 DT 6 B DT 6 1_555 B N6 DA 5 B DA 5 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DC 7 B DC 7 1_555 B N1 DG 4 B DG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N4 DC 7 B DC 7 1_555 B O6 DG 4 B DG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O2 DC 7 B DC 7 1_555 B N2 DG 4 B DG 4 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DC 8 B DC 8 1_555 B N1 DG 3 B DG 3 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N4 DC 8 B DC 8 1_555 B O6 DG 3 B DG 3 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O2 DC 8 B DC 8 1_555 B N2 DG 3 B DG 3 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N3 DT 9 B DT 9 1_555 B N1 DA 2 B DA 2 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O4 DT 9 B DT 9 1_555 B N6 DA 2 B DA 2 2_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 413 n n P O2 PO4 sing 414 n n P O3 PO4 sing 415 n n P O4 PO4 sing 416 n n # _atom_sites.entry_id 5HRE _atom_sites.fract_transf_matrix[1][1] 0.01559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001257 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 201 1 MN MN . D 4 FMT A 1 202 311 FMT FMT . E 5 PO4 A 1 203 1 PO4 PO4 . F 5 PO4 A 1 204 2 PO4 PO4 . G 6 HOH A 1 301 90 HOH HOH . G 6 HOH A 2 302 73 HOH HOH . G 6 HOH A 3 303 40 HOH HOH . G 6 HOH A 4 304 85 HOH HOH . G 6 HOH A 5 305 71 HOH HOH . G 6 HOH A 6 306 1 HOH HOH . G 6 HOH A 7 307 108 HOH HOH . G 6 HOH A 8 308 95 HOH HOH . G 6 HOH A 9 309 18 HOH HOH . G 6 HOH A 10 310 52 HOH HOH . G 6 HOH A 11 311 50 HOH HOH . G 6 HOH A 12 312 116 HOH HOH . G 6 HOH A 13 313 115 HOH HOH . G 6 HOH A 14 314 117 HOH HOH . G 6 HOH A 15 315 68 HOH HOH . G 6 HOH A 16 316 107 HOH HOH . G 6 HOH A 17 317 6 HOH HOH . G 6 HOH A 18 318 48 HOH HOH . G 6 HOH A 19 319 7 HOH HOH . G 6 HOH A 20 320 2 HOH HOH . G 6 HOH A 21 321 47 HOH HOH . G 6 HOH A 22 322 69 HOH HOH . G 6 HOH A 23 323 33 HOH HOH . G 6 HOH A 24 324 78 HOH HOH . G 6 HOH A 25 325 112 HOH HOH . G 6 HOH A 26 326 8 HOH HOH . G 6 HOH A 27 327 32 HOH HOH . G 6 HOH A 28 328 55 HOH HOH . G 6 HOH A 29 329 121 HOH HOH . G 6 HOH A 30 330 20 HOH HOH . G 6 HOH A 31 331 36 HOH HOH . G 6 HOH A 32 332 74 HOH HOH . G 6 HOH A 33 333 4 HOH HOH . G 6 HOH A 34 334 57 HOH HOH . G 6 HOH A 35 335 86 HOH HOH . G 6 HOH A 36 336 58 HOH HOH . G 6 HOH A 37 337 25 HOH HOH . G 6 HOH A 38 338 62 HOH HOH . G 6 HOH A 39 339 12 HOH HOH . G 6 HOH A 40 340 105 HOH HOH . G 6 HOH A 41 341 16 HOH HOH . G 6 HOH A 42 342 14 HOH HOH . G 6 HOH A 43 343 84 HOH HOH . G 6 HOH A 44 344 70 HOH HOH . G 6 HOH A 45 345 83 HOH HOH . G 6 HOH A 46 346 77 HOH HOH . G 6 HOH A 47 347 59 HOH HOH . G 6 HOH A 48 348 9 HOH HOH . G 6 HOH A 49 349 53 HOH HOH . G 6 HOH A 50 350 42 HOH HOH . G 6 HOH A 51 351 100 HOH HOH . G 6 HOH A 52 352 51 HOH HOH . G 6 HOH A 53 353 109 HOH HOH . G 6 HOH A 54 354 64 HOH HOH . G 6 HOH A 55 355 118 HOH HOH . G 6 HOH A 56 356 23 HOH HOH . G 6 HOH A 57 357 82 HOH HOH . G 6 HOH A 58 358 28 HOH HOH . G 6 HOH A 59 359 101 HOH HOH . G 6 HOH A 60 360 11 HOH HOH . G 6 HOH A 61 361 29 HOH HOH . G 6 HOH A 62 362 10 HOH HOH . G 6 HOH A 63 363 19 HOH HOH . G 6 HOH A 64 364 99 HOH HOH . G 6 HOH A 65 365 80 HOH HOH . G 6 HOH A 66 366 30 HOH HOH . G 6 HOH A 67 367 39 HOH HOH . G 6 HOH A 68 368 114 HOH HOH . G 6 HOH A 69 369 97 HOH HOH . G 6 HOH A 70 370 104 HOH HOH . G 6 HOH A 71 371 13 HOH HOH . G 6 HOH A 72 372 45 HOH HOH . G 6 HOH A 73 373 15 HOH HOH . G 6 HOH A 74 374 41 HOH HOH . G 6 HOH A 75 375 56 HOH HOH . G 6 HOH A 76 376 79 HOH HOH . G 6 HOH A 77 377 46 HOH HOH . G 6 HOH A 78 378 110 HOH HOH . G 6 HOH A 79 379 120 HOH HOH . G 6 HOH A 80 380 31 HOH HOH . G 6 HOH A 81 381 22 HOH HOH . G 6 HOH A 82 382 96 HOH HOH . G 6 HOH A 83 383 21 HOH HOH . G 6 HOH A 84 384 119 HOH HOH . G 6 HOH A 85 385 75 HOH HOH . G 6 HOH A 86 386 81 HOH HOH . G 6 HOH A 87 387 92 HOH HOH . G 6 HOH A 88 388 106 HOH HOH . G 6 HOH A 89 389 87 HOH HOH . G 6 HOH A 90 390 66 HOH HOH . G 6 HOH A 91 391 124 HOH HOH . G 6 HOH A 92 392 125 HOH HOH . G 6 HOH A 93 393 88 HOH HOH . G 6 HOH A 94 394 123 HOH HOH . G 6 HOH A 95 395 113 HOH HOH . G 6 HOH A 96 396 122 HOH HOH . G 6 HOH A 97 397 91 HOH HOH . G 6 HOH A 98 398 102 HOH HOH . G 6 HOH A 99 399 111 HOH HOH . G 6 HOH A 100 400 98 HOH HOH . G 6 HOH A 101 401 34 HOH HOH . G 6 HOH A 102 402 38 HOH HOH . G 6 HOH A 103 403 89 HOH HOH . H 6 HOH B 1 101 44 HOH HOH . H 6 HOH B 2 102 35 HOH HOH . H 6 HOH B 3 103 49 HOH HOH . H 6 HOH B 4 104 24 HOH HOH . H 6 HOH B 5 105 60 HOH HOH . H 6 HOH B 6 106 5 HOH HOH . H 6 HOH B 7 107 63 HOH HOH . H 6 HOH B 8 108 127 HOH HOH . H 6 HOH B 9 109 43 HOH HOH . H 6 HOH B 10 110 126 HOH HOH . H 6 HOH B 11 111 67 HOH HOH . H 6 HOH B 12 112 54 HOH HOH . H 6 HOH B 13 113 103 HOH HOH . H 6 HOH B 14 114 37 HOH HOH . H 6 HOH B 15 115 93 HOH HOH . H 6 HOH B 16 116 61 HOH HOH . H 6 HOH B 17 117 17 HOH HOH . H 6 HOH B 18 118 94 HOH HOH . H 6 HOH B 19 119 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 5 -21.456 20.298 18.781 1 49.18 ? P PO4 203 A 1 HETATM 2 O O1 PO4 . . . E 5 -22.316 20.05 17.557 1 43.65 ? O1 PO4 203 A 1 HETATM 3 O O2 PO4 . . . E 5 -20.061 20.668 18.331 1 49.91 ? O2 PO4 203 A 1 HETATM 4 O O3 PO4 . . . E 5 -21.391 19.044 19.617 1 49.14 ? O3 PO4 203 A 1 HETATM 5 O O4 PO4 . . . E 5 -22.022 21.432 19.614 1 39.07 ? O4 PO4 203 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #