data_5HRR # _model_server_result.job_id cZv3zcfzZw8L712H8LYtUg _model_server_result.datetime_utc '2024-11-13 10:46:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hrr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 5HRR # _exptl.entry_id 5HRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.594 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-tert-butoxy[1-(3,4-difluorobenzyl)-6-methyl-4-(5-methyl-3,4-dihydro-2H-chromen-6-yl)-1H-pyrrolo[2,3-b]pyridin-5-yl]acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HRR _cell.length_a 72.599 _cell.length_b 72.599 _cell.length_c 65.716 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 43.810667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 17 A CYS 65 1_555 B AS CAC . A CAC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 sing metalc ? metalc2 A SG CYS 82 A CYS 130 1_555 C AS CAC . A CAC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 sing # _chem_comp.formula 'C31 H32 F2 N2 O4' _chem_comp.formula_weight 534.594 _chem_comp.id 65P _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-tert-butoxy[1-(3,4-difluorobenzyl)-6-methyl-4-(5-methyl-3,4-dihydro-2H-chromen-6-yl)-1H-pyrrolo[2,3-b]pyridin-5-yl]acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F20 C19 65P sing 1 n n F18 C17 65P sing 2 n n C42 C39 65P sing 3 n n C42 C45 65P sing 4 n n C39 C36 65P sing 5 n n C47 C46 65P sing 6 n n O69 C68 65P doub 7 n n C19 C17 65P doub 8 n y C19 C21 65P sing 9 n y C17 C15 65P sing 10 n y O71 C68 65P sing 11 n n C68 C52 65P sing 12 n n C36 O35 65P sing 13 n n C45 C46 65P doub 14 n y C45 C34 65P sing 15 n y C46 C29 65P sing 16 n y C21 C12 65P doub 17 n y C15 C13 65P doub 18 n y C52 C51 65P sing 19 n n C52 O54 65P sing 20 n n O35 C34 65P sing 21 n n C34 C32 65P doub 22 n y C29 C28 65P sing 23 n n C29 C30 65P doub 24 n y C51 C28 65P doub 25 n y C51 C05 65P sing 26 n y C12 C13 65P sing 27 n y C12 C09 65P sing 28 n n C28 C27 65P sing 29 n y C01 C05 65P sing 30 n n C05 N06 65P doub 31 n y C27 C25 65P sing 32 n y C27 C07 65P doub 33 n y N06 C07 65P sing 34 n y O54 C55 65P sing 35 n n C25 C23 65P doub 36 n y C07 N08 65P sing 37 n y N08 C23 65P sing 38 n y N08 C09 65P sing 39 n n C32 C30 65P sing 40 n y C60 C55 65P sing 41 n n C55 C56 65P sing 42 n n C55 C64 65P sing 43 n n C13 H1 65P sing 44 n n C15 H2 65P sing 45 n n C21 H3 65P sing 46 n n C01 H4 65P sing 47 n n C01 H5 65P sing 48 n n C01 H6 65P sing 49 n n C09 H7 65P sing 50 n n C09 H8 65P sing 51 n n C23 H9 65P sing 52 n n C25 H10 65P sing 53 n n C30 H11 65P sing 54 n n C32 H12 65P sing 55 n n C36 H13 65P sing 56 n n C36 H14 65P sing 57 n n C39 H15 65P sing 58 n n C39 H16 65P sing 59 n n C42 H17 65P sing 60 n n C42 H18 65P sing 61 n n C47 H19 65P sing 62 n n C47 H20 65P sing 63 n n C47 H21 65P sing 64 n n C52 H22 65P sing 65 n n C56 H23 65P sing 66 n n C56 H24 65P sing 67 n n C56 H25 65P sing 68 n n C60 H26 65P sing 69 n n C60 H27 65P sing 70 n n C60 H28 65P sing 71 n n C64 H29 65P sing 72 n n C64 H30 65P sing 73 n n C64 H31 65P sing 74 n n O71 H32 65P sing 75 n n # _atom_sites.entry_id 5HRR _atom_sites.fract_transf_matrix[1][1] 0.013774 _atom_sites.fract_transf_matrix[1][2] 0.007953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAC A 1 301 1 CAC CAC . C 2 CAC A 1 302 2 CAC CAC . D 3 SO4 A 1 303 1 SO4 SO4 . E 3 SO4 A 1 304 2 SO4 SO4 . F 3 SO4 A 1 305 3 SO4 SO4 . G 4 EDO A 1 306 1 EDO EDO . H 5 65P A 1 307 1 65P LIG . I 6 HOH A 1 401 80 HOH HOH . I 6 HOH A 2 402 63 HOH HOH . I 6 HOH A 3 403 57 HOH HOH . I 6 HOH A 4 404 61 HOH HOH . I 6 HOH A 5 405 83 HOH HOH . I 6 HOH A 6 406 41 HOH HOH . I 6 HOH A 7 407 11 HOH HOH . I 6 HOH A 8 408 71 HOH HOH . I 6 HOH A 9 409 34 HOH HOH . I 6 HOH A 10 410 107 HOH HOH . I 6 HOH A 11 411 104 HOH HOH . I 6 HOH A 12 412 20 HOH HOH . I 6 HOH A 13 413 52 HOH HOH . I 6 HOH A 14 414 24 HOH HOH . I 6 HOH A 15 415 75 HOH HOH . I 6 HOH A 16 416 84 HOH HOH . I 6 HOH A 17 417 53 HOH HOH . I 6 HOH A 18 418 40 HOH HOH . I 6 HOH A 19 419 69 HOH HOH . I 6 HOH A 20 420 26 HOH HOH . I 6 HOH A 21 421 32 HOH HOH . I 6 HOH A 22 422 30 HOH HOH . I 6 HOH A 23 423 29 HOH HOH . I 6 HOH A 24 424 36 HOH HOH . I 6 HOH A 25 425 87 HOH HOH . I 6 HOH A 26 426 50 HOH HOH . I 6 HOH A 27 427 6 HOH HOH . I 6 HOH A 28 428 56 HOH HOH . I 6 HOH A 29 429 42 HOH HOH . I 6 HOH A 30 430 4 HOH HOH . I 6 HOH A 31 431 9 HOH HOH . I 6 HOH A 32 432 51 HOH HOH . I 6 HOH A 33 433 118 HOH HOH . I 6 HOH A 34 434 7 HOH HOH . I 6 HOH A 35 435 76 HOH HOH . I 6 HOH A 36 436 25 HOH HOH . I 6 HOH A 37 437 59 HOH HOH . I 6 HOH A 38 438 2 HOH HOH . I 6 HOH A 39 439 58 HOH HOH . I 6 HOH A 40 440 47 HOH HOH . I 6 HOH A 41 441 105 HOH HOH . I 6 HOH A 42 442 1 HOH HOH . I 6 HOH A 43 443 23 HOH HOH . I 6 HOH A 44 444 15 HOH HOH . I 6 HOH A 45 445 54 HOH HOH . I 6 HOH A 46 446 19 HOH HOH . I 6 HOH A 47 447 119 HOH HOH . I 6 HOH A 48 448 35 HOH HOH . I 6 HOH A 49 449 18 HOH HOH . I 6 HOH A 50 450 98 HOH HOH . I 6 HOH A 51 451 8 HOH HOH . I 6 HOH A 52 452 17 HOH HOH . I 6 HOH A 53 453 14 HOH HOH . I 6 HOH A 54 454 106 HOH HOH . I 6 HOH A 55 455 5 HOH HOH . I 6 HOH A 56 456 3 HOH HOH . I 6 HOH A 57 457 64 HOH HOH . I 6 HOH A 58 458 73 HOH HOH . I 6 HOH A 59 459 38 HOH HOH . I 6 HOH A 60 460 37 HOH HOH . I 6 HOH A 61 461 28 HOH HOH . I 6 HOH A 62 462 62 HOH HOH . I 6 HOH A 63 463 55 HOH HOH . I 6 HOH A 64 464 60 HOH HOH . I 6 HOH A 65 465 101 HOH HOH . I 6 HOH A 66 466 90 HOH HOH . I 6 HOH A 67 467 89 HOH HOH . I 6 HOH A 68 468 12 HOH HOH . I 6 HOH A 69 469 16 HOH HOH . I 6 HOH A 70 470 48 HOH HOH . I 6 HOH A 71 471 81 HOH HOH . I 6 HOH A 72 472 10 HOH HOH . I 6 HOH A 73 473 68 HOH HOH . I 6 HOH A 74 474 109 HOH HOH . I 6 HOH A 75 475 91 HOH HOH . I 6 HOH A 76 476 33 HOH HOH . I 6 HOH A 77 477 13 HOH HOH . I 6 HOH A 78 478 99 HOH HOH . I 6 HOH A 79 479 93 HOH HOH . I 6 HOH A 80 480 82 HOH HOH . I 6 HOH A 81 481 45 HOH HOH . I 6 HOH A 82 482 86 HOH HOH . I 6 HOH A 83 483 78 HOH HOH . I 6 HOH A 84 484 49 HOH HOH . I 6 HOH A 85 485 72 HOH HOH . I 6 HOH A 86 486 117 HOH HOH . I 6 HOH A 87 487 96 HOH HOH . I 6 HOH A 88 488 66 HOH HOH . I 6 HOH A 89 489 97 HOH HOH . I 6 HOH A 90 490 27 HOH HOH . I 6 HOH A 91 491 43 HOH HOH . I 6 HOH A 92 492 22 HOH HOH . I 6 HOH A 93 493 95 HOH HOH . I 6 HOH A 94 494 88 HOH HOH . I 6 HOH A 95 495 92 HOH HOH . I 6 HOH A 96 496 116 HOH HOH . I 6 HOH A 97 497 100 HOH HOH . I 6 HOH A 98 498 112 HOH HOH . I 6 HOH A 99 499 110 HOH HOH . I 6 HOH A 100 500 74 HOH HOH . I 6 HOH A 101 501 102 HOH HOH . I 6 HOH A 102 502 70 HOH HOH . I 6 HOH A 103 503 111 HOH HOH . I 6 HOH A 104 504 94 HOH HOH . I 6 HOH A 105 505 77 HOH HOH . I 6 HOH A 106 506 120 HOH HOH . I 6 HOH A 107 507 46 HOH HOH . I 6 HOH A 108 508 108 HOH HOH . I 6 HOH A 109 509 39 HOH HOH . I 6 HOH A 110 510 65 HOH HOH . I 6 HOH A 111 511 115 HOH HOH . I 6 HOH A 112 512 21 HOH HOH . I 6 HOH A 113 513 31 HOH HOH . I 6 HOH A 114 514 79 HOH HOH . I 6 HOH A 115 515 44 HOH HOH . I 6 HOH A 116 516 113 HOH HOH . I 6 HOH A 117 517 114 HOH HOH . I 6 HOH A 118 518 67 HOH HOH . I 6 HOH A 119 519 85 HOH HOH . I 6 HOH A 120 520 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 65P . . . H 5 -50.711 -19.78 16.524 1 62.12 ? C13 65P 307 A 1 HETATM 2 C C15 65P . . . H 5 -51.469 -20.25 15.461 1 65.23 ? C15 65P 307 A 1 HETATM 3 C C17 65P . . . H 5 -51.092 -19.917 14.183 1 67.04 ? C17 65P 307 A 1 HETATM 4 C C21 65P . . . H 5 -49.24 -18.65 15.004 1 60.11 ? C21 65P 307 A 1 HETATM 5 C C28 65P . . . H 5 -45.486 -15.146 15.93 1 32.42 ? C28 65P 307 A 1 HETATM 6 C C01 65P . . . H 5 -48.978 -13.374 16.102 1 35.5 ? C01 65P 307 A 1 HETATM 7 C C05 65P . . . H 5 -47.871 -14.399 16.187 1 35.74 ? C05 65P 307 A 1 HETATM 8 N N06 65P . . . H 5 -48.244 -15.615 16.622 1 35.12 ? N06 65P 307 A 1 HETATM 9 C C07 65P . . . H 5 -47.308 -16.564 16.709 1 35.09 ? C07 65P 307 A 1 HETATM 10 N N08 65P . . . H 5 -47.502 -17.871 17.083 1 40.69 ? N08 65P 307 A 1 HETATM 11 C C09 65P . . . H 5 -48.774 -18.481 17.484 1 49.42 ? C09 65P 307 A 1 HETATM 12 C C12 65P . . . H 5 -49.594 -18.98 16.314 1 57 ? C12 65P 307 A 1 HETATM 13 F F18 65P . . . H 5 -51.825 -20.336 13.126 1 70.53 ? F18 65P 307 A 1 HETATM 14 C C19 65P . . . H 5 -50 -19.122 13.962 1 64.69 ? C19 65P 307 A 1 HETATM 15 F F20 65P . . . H 5 -49.669 -18.809 12.688 1 66.41 ? F20 65P 307 A 1 HETATM 16 C C23 65P . . . H 5 -46.285 -18.517 17.001 1 39.88 ? C23 65P 307 A 1 HETATM 17 C C25 65P . . . H 5 -45.327 -17.667 16.568 1 36.67 ? C25 65P 307 A 1 HETATM 18 C C27 65P . . . H 5 -45.957 -16.389 16.438 1 35.4 ? C27 65P 307 A 1 HETATM 19 C C29 65P . . . H 5 -44.02 -14.982 15.663 1 30.34 ? C29 65P 307 A 1 HETATM 20 C C30 65P . . . H 5 -43.214 -14.728 16.775 1 29.86 ? C30 65P 307 A 1 HETATM 21 C C32 65P . . . H 5 -41.858 -14.489 16.613 1 30.96 ? C32 65P 307 A 1 HETATM 22 C C34 65P . . . H 5 -41.308 -14.494 15.341 1 29.89 ? C34 65P 307 A 1 HETATM 23 O O35 65P . . . H 5 -39.949 -14.295 15.268 1 30.3 ? O35 65P 307 A 1 HETATM 24 C C36 65P . . . H 5 -39.458 -13.944 13.965 1 31.1 ? C36 65P 307 A 1 HETATM 25 C C39 65P . . . H 5 -39.927 -14.908 12.903 1 34.19 ? C39 65P 307 A 1 HETATM 26 C C42 65P . . . H 5 -41.441 -14.882 12.822 1 32.33 ? C42 65P 307 A 1 HETATM 27 C C45 65P . . . H 5 -42.083 -14.795 14.208 1 31.45 ? C45 65P 307 A 1 HETATM 28 C C46 65P . . . H 5 -43.461 -15.023 14.36 1 31.2 ? C46 65P 307 A 1 HETATM 29 C C47 65P . . . H 5 -44.31 -15.328 13.146 1 34.79 ? C47 65P 307 A 1 HETATM 30 C C51 65P . . . H 5 -46.504 -14.161 15.837 1 32.21 ? C51 65P 307 A 1 HETATM 31 C C52 65P . . . H 5 -46.031 -12.766 15.355 1 30.7 ? C52 65P 307 A 1 HETATM 32 O O54 65P . . . H 5 -46.343 -11.716 16.296 1 31.33 ? O54 65P 307 A 1 HETATM 33 C C55 65P . . . H 5 -45.696 -11.38 17.561 1 32.91 ? C55 65P 307 A 1 HETATM 34 C C56 65P . . . H 5 -45.958 -12.5 18.543 1 30.79 ? C56 65P 307 A 1 HETATM 35 C C60 65P . . . H 5 -46.389 -10.105 17.989 1 29.87 ? C60 65P 307 A 1 HETATM 36 C C64 65P . . . H 5 -44.209 -11.153 17.399 1 29.11 ? C64 65P 307 A 1 HETATM 37 C C68 65P . . . H 5 -46.535 -12.456 13.951 1 33.33 ? C68 65P 307 A 1 HETATM 38 O O69 65P . . . H 5 -46.838 -13.327 13.161 1 32.8 ? O69 65P 307 A 1 HETATM 39 O O71 65P . . . H 5 -46.646 -11.194 13.695 1 29.71 ? O71 65P 307 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #