data_5HS6 # _model_server_result.job_id '_ATGOBiKupy9Jh_9L6DaLw' _model_server_result.datetime_utc '2024-11-14 11:19:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hs6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5HS6 # _exptl.entry_id 5HS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.366 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HS6 _cell.length_a 91.111 _cell.length_b 91.111 _cell.length_c 132.021 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.111 0 0 3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 91.111 0 0 4 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A O GLU 52 A GLU 50 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 A O LEU 55 A LEU 53 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A O ALA 58 A ALA 56 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'C18 H22 O2' _chem_comp.formula_weight 270.366 _chem_comp.id J3Z _chem_comp.mon_nstd_flag . _chem_comp.name (9beta,13alpha)-3-hydroxyestra-1,3,5(10)-trien-17-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Estrone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 J3Z sing 173 n n C8 C7 J3Z sing 174 n n O1 C7 J3Z doub 175 n n C9 C10 J3Z sing 176 n n C7 C5 J3Z sing 177 n n C6 C5 J3Z sing 178 n n C5 C10 J3Z sing 179 n n C5 C4 J3Z sing 180 n n C10 C12 J3Z sing 181 n n C14 C12 J3Z sing 182 n n C14 C15 J3Z sing 183 n n C12 C2 J3Z sing 184 n n C4 C3 J3Z sing 185 n n C15 C16 J3Z sing 186 n n C2 C3 J3Z sing 187 n n C2 C21 J3Z sing 188 n n C16 C21 J3Z doub 189 n y C16 C17 J3Z sing 190 n y C21 C20 J3Z sing 191 n y C17 C18 J3Z doub 192 n y C20 C19 J3Z doub 193 n y C18 C19 J3Z sing 194 n y C18 O3 J3Z sing 195 n n C2 H2 J3Z sing 196 n n C4 H14 J3Z sing 197 n n C4 H24 J3Z sing 198 n n C6 H16 J3Z sing 199 n n C6 H26 J3Z sing 200 n n C6 H36 J3Z sing 201 n n O3 HO3 J3Z sing 202 n n C8 H18 J3Z sing 203 n n C8 H28 J3Z sing 204 n n C9 H19 J3Z sing 205 n n C9 H29 J3Z sing 206 n n C10 H10 J3Z sing 207 n n C12 H12 J3Z sing 208 n n C3 H13 J3Z sing 209 n n C3 H23 J3Z sing 210 n n C14 H114 J3Z sing 211 n n C14 H214 J3Z sing 212 n n C15 H115 J3Z sing 213 n n C15 H215 J3Z sing 214 n n C17 H17 J3Z sing 215 n n C19 H19A J3Z sing 216 n n C20 H20 J3Z sing 217 n n # _atom_sites.entry_id 5HS6 _atom_sites.fract_transf_matrix[1][1] 0.010976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 2 NAD NAD . C 3 J3Z A 1 302 1 J3Z XXX . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 28 HOH HOH . E 5 HOH A 2 402 149 HOH HOH . E 5 HOH A 3 403 8 HOH HOH . E 5 HOH A 4 404 5 HOH HOH . E 5 HOH A 5 405 20 HOH HOH . E 5 HOH A 6 406 166 HOH HOH . E 5 HOH A 7 407 37 HOH HOH . E 5 HOH A 8 408 40 HOH HOH . E 5 HOH A 9 409 59 HOH HOH . E 5 HOH A 10 410 110 HOH HOH . E 5 HOH A 11 411 7 HOH HOH . E 5 HOH A 12 412 156 HOH HOH . E 5 HOH A 13 413 84 HOH HOH . E 5 HOH A 14 414 12 HOH HOH . E 5 HOH A 15 415 32 HOH HOH . E 5 HOH A 16 416 108 HOH HOH . E 5 HOH A 17 417 34 HOH HOH . E 5 HOH A 18 418 78 HOH HOH . E 5 HOH A 19 419 17 HOH HOH . E 5 HOH A 20 420 76 HOH HOH . E 5 HOH A 21 421 35 HOH HOH . E 5 HOH A 22 422 44 HOH HOH . E 5 HOH A 23 423 2 HOH HOH . E 5 HOH A 24 424 6 HOH HOH . E 5 HOH A 25 425 27 HOH HOH . E 5 HOH A 26 426 63 HOH HOH . E 5 HOH A 27 427 132 HOH HOH . E 5 HOH A 28 428 30 HOH HOH . E 5 HOH A 29 429 73 HOH HOH . E 5 HOH A 30 430 104 HOH HOH . E 5 HOH A 31 431 11 HOH HOH . E 5 HOH A 32 432 161 HOH HOH . E 5 HOH A 33 433 23 HOH HOH . E 5 HOH A 34 434 14 HOH HOH . E 5 HOH A 35 435 87 HOH HOH . E 5 HOH A 36 436 56 HOH HOH . E 5 HOH A 37 437 47 HOH HOH . E 5 HOH A 38 438 106 HOH HOH . E 5 HOH A 39 439 54 HOH HOH . E 5 HOH A 40 440 107 HOH HOH . E 5 HOH A 41 441 51 HOH HOH . E 5 HOH A 42 442 68 HOH HOH . E 5 HOH A 43 443 79 HOH HOH . E 5 HOH A 44 444 94 HOH HOH . E 5 HOH A 45 445 16 HOH HOH . E 5 HOH A 46 446 10 HOH HOH . E 5 HOH A 47 447 126 HOH HOH . E 5 HOH A 48 448 41 HOH HOH . E 5 HOH A 49 449 61 HOH HOH . E 5 HOH A 50 450 52 HOH HOH . E 5 HOH A 51 451 3 HOH HOH . E 5 HOH A 52 452 38 HOH HOH . E 5 HOH A 53 453 43 HOH HOH . E 5 HOH A 54 454 111 HOH HOH . E 5 HOH A 55 455 46 HOH HOH . E 5 HOH A 56 456 19 HOH HOH . E 5 HOH A 57 457 90 HOH HOH . E 5 HOH A 58 458 86 HOH HOH . E 5 HOH A 59 459 71 HOH HOH . E 5 HOH A 60 460 50 HOH HOH . E 5 HOH A 61 461 83 HOH HOH . E 5 HOH A 62 462 24 HOH HOH . E 5 HOH A 63 463 31 HOH HOH . E 5 HOH A 64 464 121 HOH HOH . E 5 HOH A 65 465 13 HOH HOH . E 5 HOH A 66 466 164 HOH HOH . E 5 HOH A 67 467 74 HOH HOH . E 5 HOH A 68 468 95 HOH HOH . E 5 HOH A 69 469 49 HOH HOH . E 5 HOH A 70 470 89 HOH HOH . E 5 HOH A 71 471 131 HOH HOH . E 5 HOH A 72 472 33 HOH HOH . E 5 HOH A 73 473 36 HOH HOH . E 5 HOH A 74 474 116 HOH HOH . E 5 HOH A 75 475 4 HOH HOH . E 5 HOH A 76 476 92 HOH HOH . E 5 HOH A 77 477 105 HOH HOH . E 5 HOH A 78 478 58 HOH HOH . E 5 HOH A 79 479 134 HOH HOH . E 5 HOH A 80 480 139 HOH HOH . E 5 HOH A 81 481 25 HOH HOH . E 5 HOH A 82 482 155 HOH HOH . E 5 HOH A 83 483 21 HOH HOH . E 5 HOH A 84 484 98 HOH HOH . E 5 HOH A 85 485 93 HOH HOH . E 5 HOH A 86 486 55 HOH HOH . E 5 HOH A 87 487 18 HOH HOH . E 5 HOH A 88 488 15 HOH HOH . E 5 HOH A 89 489 102 HOH HOH . E 5 HOH A 90 490 158 HOH HOH . E 5 HOH A 91 491 42 HOH HOH . E 5 HOH A 92 492 22 HOH HOH . E 5 HOH A 93 493 70 HOH HOH . E 5 HOH A 94 494 99 HOH HOH . E 5 HOH A 95 495 9 HOH HOH . E 5 HOH A 96 496 66 HOH HOH . E 5 HOH A 97 497 26 HOH HOH . E 5 HOH A 98 498 136 HOH HOH . E 5 HOH A 99 499 163 HOH HOH . E 5 HOH A 100 500 154 HOH HOH . E 5 HOH A 101 501 145 HOH HOH . E 5 HOH A 102 502 85 HOH HOH . E 5 HOH A 103 503 75 HOH HOH . E 5 HOH A 104 504 65 HOH HOH . E 5 HOH A 105 505 80 HOH HOH . E 5 HOH A 106 506 48 HOH HOH . E 5 HOH A 107 507 60 HOH HOH . E 5 HOH A 108 508 123 HOH HOH . E 5 HOH A 109 509 138 HOH HOH . E 5 HOH A 110 510 39 HOH HOH . E 5 HOH A 111 511 137 HOH HOH . E 5 HOH A 112 512 122 HOH HOH . E 5 HOH A 113 513 124 HOH HOH . E 5 HOH A 114 514 165 HOH HOH . E 5 HOH A 115 515 82 HOH HOH . E 5 HOH A 116 516 120 HOH HOH . E 5 HOH A 117 517 159 HOH HOH . E 5 HOH A 118 518 140 HOH HOH . E 5 HOH A 119 519 148 HOH HOH . E 5 HOH A 120 520 133 HOH HOH . E 5 HOH A 121 521 45 HOH HOH . E 5 HOH A 122 522 53 HOH HOH . E 5 HOH A 123 523 81 HOH HOH . E 5 HOH A 124 524 57 HOH HOH . E 5 HOH A 125 525 96 HOH HOH . E 5 HOH A 126 526 146 HOH HOH . E 5 HOH A 127 527 88 HOH HOH . E 5 HOH A 128 528 115 HOH HOH . E 5 HOH A 129 529 117 HOH HOH . E 5 HOH A 130 530 69 HOH HOH . E 5 HOH A 131 531 72 HOH HOH . E 5 HOH A 132 532 103 HOH HOH . E 5 HOH A 133 533 114 HOH HOH . E 5 HOH A 134 534 144 HOH HOH . E 5 HOH A 135 535 162 HOH HOH . E 5 HOH A 136 536 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 J3Z . . . C 3 28.955 7.236 -12.534 0.88 49.03 ? C2 J3Z 302 A 1 HETATM 2 C C4 J3Z . . . C 3 26.489 6.895 -13.115 0.88 45.34 ? C4 J3Z 302 A 1 HETATM 3 C C5 J3Z . . . C 3 26.639 5.393 -12.839 0.88 48.46 ? C5 J3Z 302 A 1 HETATM 4 O O1 J3Z . . . C 3 24.304 4.943 -12.327 0.88 41.94 ? O1 J3Z 302 A 1 HETATM 5 O O3 J3Z . . . C 3 33.904 9.214 -14.48 0.88 35.53 ? O3 J3Z 302 A 1 HETATM 6 C C7 J3Z . . . C 3 25.474 4.676 -12.182 0.88 47.73 ? C7 J3Z 302 A 1 HETATM 7 C C8 J3Z . . . C 3 26.024 3.562 -11.317 0.88 49.07 ? C8 J3Z 302 A 1 HETATM 8 C C9 J3Z . . . C 3 27.544 3.766 -11.292 0.88 50.61 ? C9 J3Z 302 A 1 HETATM 9 C C10 J3Z . . . C 3 27.714 5.221 -11.762 0.88 48.04 ? C10 J3Z 302 A 1 HETATM 10 C C12 J3Z . . . C 3 29.08 5.735 -12.216 0.88 50.02 ? C12 J3Z 302 A 1 HETATM 11 C C3 J3Z . . . C 3 27.826 7.512 -13.539 0.88 44.84 ? C3 J3Z 302 A 1 HETATM 12 C C14 J3Z . . . C 3 30.182 5.54 -11.176 0.88 46.44 ? C14 J3Z 302 A 1 HETATM 13 C C15 J3Z . . . C 3 31.53 5.93 -11.763 0.88 46.77 ? C15 J3Z 302 A 1 HETATM 14 C C16 J3Z . . . C 3 31.499 7.172 -12.623 0.88 45 ? C16 J3Z 302 A 1 HETATM 15 C C21 J3Z . . . C 3 30.298 7.817 -12.951 0.88 47 ? C21 J3Z 302 A 1 HETATM 16 C C17 J3Z . . . C 3 32.703 7.669 -13.115 0.88 40.56 ? C17 J3Z 302 A 1 HETATM 17 C C18 J3Z . . . C 3 32.725 8.787 -13.934 0.88 38.83 ? C18 J3Z 302 A 1 HETATM 18 C C19 J3Z . . . C 3 31.543 9.443 -14.237 0.88 38.13 ? C19 J3Z 302 A 1 HETATM 19 C C20 J3Z . . . C 3 30.347 8.961 -13.742 0.88 39.65 ? C20 J3Z 302 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #