data_5HS6 # _model_server_result.job_id vg_iWrHo1HPLNWzWwvBntQ _model_server_result.datetime_utc '2024-12-21 11:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hs6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5HS6 # _exptl.entry_id 5HS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HS6 _cell.length_a 91.111 _cell.length_b 91.111 _cell.length_c 132.021 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.111 0 0 3 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 91.111 0 0 4 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 257 A CYS 255 1_555 A SG CYS 257 A CYS 255 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A O GLU 52 A GLU 50 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 A O LEU 55 A LEU 53 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A O ALA 58 A ALA 56 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HS6 _atom_sites.fract_transf_matrix[1][1] 0.010976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 301 2 NAD NAD . C 3 J3Z A 1 302 1 J3Z XXX . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 28 HOH HOH . E 5 HOH A 2 402 149 HOH HOH . E 5 HOH A 3 403 8 HOH HOH . E 5 HOH A 4 404 5 HOH HOH . E 5 HOH A 5 405 20 HOH HOH . E 5 HOH A 6 406 166 HOH HOH . E 5 HOH A 7 407 37 HOH HOH . E 5 HOH A 8 408 40 HOH HOH . E 5 HOH A 9 409 59 HOH HOH . E 5 HOH A 10 410 110 HOH HOH . E 5 HOH A 11 411 7 HOH HOH . E 5 HOH A 12 412 156 HOH HOH . E 5 HOH A 13 413 84 HOH HOH . E 5 HOH A 14 414 12 HOH HOH . E 5 HOH A 15 415 32 HOH HOH . E 5 HOH A 16 416 108 HOH HOH . E 5 HOH A 17 417 34 HOH HOH . E 5 HOH A 18 418 78 HOH HOH . E 5 HOH A 19 419 17 HOH HOH . E 5 HOH A 20 420 76 HOH HOH . E 5 HOH A 21 421 35 HOH HOH . E 5 HOH A 22 422 44 HOH HOH . E 5 HOH A 23 423 2 HOH HOH . E 5 HOH A 24 424 6 HOH HOH . E 5 HOH A 25 425 27 HOH HOH . E 5 HOH A 26 426 63 HOH HOH . E 5 HOH A 27 427 132 HOH HOH . E 5 HOH A 28 428 30 HOH HOH . E 5 HOH A 29 429 73 HOH HOH . E 5 HOH A 30 430 104 HOH HOH . E 5 HOH A 31 431 11 HOH HOH . E 5 HOH A 32 432 161 HOH HOH . E 5 HOH A 33 433 23 HOH HOH . E 5 HOH A 34 434 14 HOH HOH . E 5 HOH A 35 435 87 HOH HOH . E 5 HOH A 36 436 56 HOH HOH . E 5 HOH A 37 437 47 HOH HOH . E 5 HOH A 38 438 106 HOH HOH . E 5 HOH A 39 439 54 HOH HOH . E 5 HOH A 40 440 107 HOH HOH . E 5 HOH A 41 441 51 HOH HOH . E 5 HOH A 42 442 68 HOH HOH . E 5 HOH A 43 443 79 HOH HOH . E 5 HOH A 44 444 94 HOH HOH . E 5 HOH A 45 445 16 HOH HOH . E 5 HOH A 46 446 10 HOH HOH . E 5 HOH A 47 447 126 HOH HOH . E 5 HOH A 48 448 41 HOH HOH . E 5 HOH A 49 449 61 HOH HOH . E 5 HOH A 50 450 52 HOH HOH . E 5 HOH A 51 451 3 HOH HOH . E 5 HOH A 52 452 38 HOH HOH . E 5 HOH A 53 453 43 HOH HOH . E 5 HOH A 54 454 111 HOH HOH . E 5 HOH A 55 455 46 HOH HOH . E 5 HOH A 56 456 19 HOH HOH . E 5 HOH A 57 457 90 HOH HOH . E 5 HOH A 58 458 86 HOH HOH . E 5 HOH A 59 459 71 HOH HOH . E 5 HOH A 60 460 50 HOH HOH . E 5 HOH A 61 461 83 HOH HOH . E 5 HOH A 62 462 24 HOH HOH . E 5 HOH A 63 463 31 HOH HOH . E 5 HOH A 64 464 121 HOH HOH . E 5 HOH A 65 465 13 HOH HOH . E 5 HOH A 66 466 164 HOH HOH . E 5 HOH A 67 467 74 HOH HOH . E 5 HOH A 68 468 95 HOH HOH . E 5 HOH A 69 469 49 HOH HOH . E 5 HOH A 70 470 89 HOH HOH . E 5 HOH A 71 471 131 HOH HOH . E 5 HOH A 72 472 33 HOH HOH . E 5 HOH A 73 473 36 HOH HOH . E 5 HOH A 74 474 116 HOH HOH . E 5 HOH A 75 475 4 HOH HOH . E 5 HOH A 76 476 92 HOH HOH . E 5 HOH A 77 477 105 HOH HOH . E 5 HOH A 78 478 58 HOH HOH . E 5 HOH A 79 479 134 HOH HOH . E 5 HOH A 80 480 139 HOH HOH . E 5 HOH A 81 481 25 HOH HOH . E 5 HOH A 82 482 155 HOH HOH . E 5 HOH A 83 483 21 HOH HOH . E 5 HOH A 84 484 98 HOH HOH . E 5 HOH A 85 485 93 HOH HOH . E 5 HOH A 86 486 55 HOH HOH . E 5 HOH A 87 487 18 HOH HOH . E 5 HOH A 88 488 15 HOH HOH . E 5 HOH A 89 489 102 HOH HOH . E 5 HOH A 90 490 158 HOH HOH . E 5 HOH A 91 491 42 HOH HOH . E 5 HOH A 92 492 22 HOH HOH . E 5 HOH A 93 493 70 HOH HOH . E 5 HOH A 94 494 99 HOH HOH . E 5 HOH A 95 495 9 HOH HOH . E 5 HOH A 96 496 66 HOH HOH . E 5 HOH A 97 497 26 HOH HOH . E 5 HOH A 98 498 136 HOH HOH . E 5 HOH A 99 499 163 HOH HOH . E 5 HOH A 100 500 154 HOH HOH . E 5 HOH A 101 501 145 HOH HOH . E 5 HOH A 102 502 85 HOH HOH . E 5 HOH A 103 503 75 HOH HOH . E 5 HOH A 104 504 65 HOH HOH . E 5 HOH A 105 505 80 HOH HOH . E 5 HOH A 106 506 48 HOH HOH . E 5 HOH A 107 507 60 HOH HOH . E 5 HOH A 108 508 123 HOH HOH . E 5 HOH A 109 509 138 HOH HOH . E 5 HOH A 110 510 39 HOH HOH . E 5 HOH A 111 511 137 HOH HOH . E 5 HOH A 112 512 122 HOH HOH . E 5 HOH A 113 513 124 HOH HOH . E 5 HOH A 114 514 165 HOH HOH . E 5 HOH A 115 515 82 HOH HOH . E 5 HOH A 116 516 120 HOH HOH . E 5 HOH A 117 517 159 HOH HOH . E 5 HOH A 118 518 140 HOH HOH . E 5 HOH A 119 519 148 HOH HOH . E 5 HOH A 120 520 133 HOH HOH . E 5 HOH A 121 521 45 HOH HOH . E 5 HOH A 122 522 53 HOH HOH . E 5 HOH A 123 523 81 HOH HOH . E 5 HOH A 124 524 57 HOH HOH . E 5 HOH A 125 525 96 HOH HOH . E 5 HOH A 126 526 146 HOH HOH . E 5 HOH A 127 527 88 HOH HOH . E 5 HOH A 128 528 115 HOH HOH . E 5 HOH A 129 529 117 HOH HOH . E 5 HOH A 130 530 69 HOH HOH . E 5 HOH A 131 531 72 HOH HOH . E 5 HOH A 132 532 103 HOH HOH . E 5 HOH A 133 533 114 HOH HOH . E 5 HOH A 134 534 144 HOH HOH . E 5 HOH A 135 535 162 HOH HOH . E 5 HOH A 136 536 62 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 40.691 _atom_site.Cartn_y 34.774 _atom_site.Cartn_z -20.691 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #