data_5HSS # _model_server_result.job_id SEPuvyuRUazvKz_9nb5ftg _model_server_result.datetime_utc '2024-11-18 09:50:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hss # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":402}' # _entry.id 5HSS # _exptl.entry_id 5HSS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.249 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Geraniol _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HSS _cell.length_a 99.27 _cell.length_b 106.29 _cell.length_c 221.33 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HSS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 48 A CYS 48 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 48 B CYS 48 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 C SG CYS 48 C CYS 48 1_555 C SG CYS 101 C CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 D SG CYS 48 D CYS 48 1_555 D SG CYS 101 D CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf5 E SG CYS 48 E CYS 48 1_555 E SG CYS 101 E CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C10 H18 O' _chem_comp.formula_weight 154.249 _chem_comp.id 64Z _chem_comp.mon_nstd_flag . _chem_comp.name Geraniol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C1 64Z sing 1 n n C C1 64Z sing 2 n n C1 C2 64Z doub 3 n n C2 C3 64Z sing 4 n n C3 C4 64Z sing 5 n n C4 C5 64Z sing 6 n n C8 C5 64Z sing 7 n n C5 C6 64Z doub 8 e n O C7 64Z sing 9 n n C6 C7 64Z sing 10 n n C2 H1 64Z sing 11 n n C3 H2 64Z sing 12 n n C3 H3 64Z sing 13 n n C4 H4 64Z sing 14 n n C4 H5 64Z sing 15 n n C6 H6 64Z sing 16 n n C7 H7 64Z sing 17 n n C7 H8 64Z sing 18 n n C8 H9 64Z sing 19 n n C8 H10 64Z sing 20 n n C8 H11 64Z sing 21 n n C9 H12 64Z sing 22 n n C9 H13 64Z sing 23 n n C9 H14 64Z sing 24 n n O H15 64Z sing 25 n n C H16 64Z sing 26 n n C H17 64Z sing 27 n n C H18 64Z sing 28 n n # _atom_sites.entry_id 5HSS _atom_sites.fract_transf_matrix[1][1] 0.010074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PG0 A 1 401 1 PG0 PEG . G 3 64Z A 1 402 1 64Z GER . H 2 PG0 B 1 401 2 PG0 PEG . I 4 650 B 1 402 1 650 MYR . J 4 650 C 1 401 2 650 MYR . K 2 PG0 D 1 401 3 PG0 PEG . L 2 PG0 D 1 402 4 PG0 PEG . M 3 64Z D 1 403 2 64Z GER . N 2 PG0 E 1 401 5 PG0 PEG . O 3 64Z E 1 402 3 64Z GER . P 5 HOH A 1 501 124 HOH HOH . P 5 HOH A 2 502 69 HOH HOH . P 5 HOH A 3 503 103 HOH HOH . P 5 HOH A 4 504 10 HOH HOH . P 5 HOH A 5 505 95 HOH HOH . P 5 HOH A 6 506 15 HOH HOH . P 5 HOH A 7 507 6 HOH HOH . P 5 HOH A 8 508 83 HOH HOH . P 5 HOH A 9 509 72 HOH HOH . P 5 HOH A 10 510 5 HOH HOH . P 5 HOH A 11 511 37 HOH HOH . P 5 HOH A 12 512 53 HOH HOH . P 5 HOH A 13 513 92 HOH HOH . P 5 HOH A 14 514 121 HOH HOH . P 5 HOH A 15 515 123 HOH HOH . P 5 HOH A 16 516 119 HOH HOH . P 5 HOH A 17 517 85 HOH HOH . P 5 HOH A 18 518 31 HOH HOH . P 5 HOH A 19 519 35 HOH HOH . Q 5 HOH B 1 501 50 HOH HOH . Q 5 HOH B 2 502 16 HOH HOH . Q 5 HOH B 3 503 13 HOH HOH . Q 5 HOH B 4 504 80 HOH HOH . Q 5 HOH B 5 505 33 HOH HOH . Q 5 HOH B 6 506 118 HOH HOH . Q 5 HOH B 7 507 36 HOH HOH . Q 5 HOH B 8 508 1 HOH HOH . Q 5 HOH B 9 509 79 HOH HOH . Q 5 HOH B 10 510 127 HOH HOH . Q 5 HOH B 11 511 82 HOH HOH . Q 5 HOH B 12 512 56 HOH HOH . Q 5 HOH B 13 513 25 HOH HOH . Q 5 HOH B 14 514 106 HOH HOH . Q 5 HOH B 15 515 45 HOH HOH . Q 5 HOH B 16 516 98 HOH HOH . Q 5 HOH B 17 517 76 HOH HOH . Q 5 HOH B 18 518 96 HOH HOH . R 5 HOH C 1 501 86 HOH HOH . R 5 HOH C 2 502 30 HOH HOH . R 5 HOH C 3 503 38 HOH HOH . R 5 HOH C 4 504 62 HOH HOH . R 5 HOH C 5 505 40 HOH HOH . R 5 HOH C 6 506 18 HOH HOH . R 5 HOH C 7 507 70 HOH HOH . R 5 HOH C 8 508 91 HOH HOH . R 5 HOH C 9 509 61 HOH HOH . R 5 HOH C 10 510 51 HOH HOH . R 5 HOH C 11 511 11 HOH HOH . R 5 HOH C 12 512 113 HOH HOH . R 5 HOH C 13 513 21 HOH HOH . R 5 HOH C 14 514 2 HOH HOH . R 5 HOH C 15 515 32 HOH HOH . R 5 HOH C 16 516 68 HOH HOH . R 5 HOH C 17 517 49 HOH HOH . R 5 HOH C 18 518 77 HOH HOH . R 5 HOH C 19 519 116 HOH HOH . R 5 HOH C 20 520 115 HOH HOH . R 5 HOH C 21 521 24 HOH HOH . R 5 HOH C 22 522 12 HOH HOH . R 5 HOH C 23 523 112 HOH HOH . R 5 HOH C 24 524 109 HOH HOH . R 5 HOH C 25 525 81 HOH HOH . S 5 HOH D 1 501 7 HOH HOH . S 5 HOH D 2 502 57 HOH HOH . S 5 HOH D 3 503 60 HOH HOH . S 5 HOH D 4 504 94 HOH HOH . S 5 HOH D 5 505 47 HOH HOH . S 5 HOH D 6 506 104 HOH HOH . S 5 HOH D 7 507 46 HOH HOH . S 5 HOH D 8 508 26 HOH HOH . S 5 HOH D 9 509 22 HOH HOH . S 5 HOH D 10 510 3 HOH HOH . S 5 HOH D 11 511 65 HOH HOH . S 5 HOH D 12 512 19 HOH HOH . S 5 HOH D 13 513 89 HOH HOH . S 5 HOH D 14 514 27 HOH HOH . S 5 HOH D 15 515 74 HOH HOH . S 5 HOH D 16 516 75 HOH HOH . S 5 HOH D 17 517 41 HOH HOH . S 5 HOH D 18 518 87 HOH HOH . S 5 HOH D 19 519 52 HOH HOH . S 5 HOH D 20 520 17 HOH HOH . S 5 HOH D 21 521 28 HOH HOH . S 5 HOH D 22 522 105 HOH HOH . S 5 HOH D 23 523 54 HOH HOH . S 5 HOH D 24 524 117 HOH HOH . S 5 HOH D 25 525 66 HOH HOH . T 5 HOH E 1 501 14 HOH HOH . T 5 HOH E 2 502 90 HOH HOH . T 5 HOH E 3 503 20 HOH HOH . T 5 HOH E 4 504 126 HOH HOH . T 5 HOH E 5 505 44 HOH HOH . T 5 HOH E 6 506 43 HOH HOH . T 5 HOH E 7 507 59 HOH HOH . T 5 HOH E 8 508 120 HOH HOH . T 5 HOH E 9 509 100 HOH HOH . T 5 HOH E 10 510 8 HOH HOH . T 5 HOH E 11 511 34 HOH HOH . T 5 HOH E 12 512 55 HOH HOH . T 5 HOH E 13 513 88 HOH HOH . T 5 HOH E 14 514 71 HOH HOH . T 5 HOH E 15 515 101 HOH HOH . T 5 HOH E 16 516 29 HOH HOH . T 5 HOH E 17 517 58 HOH HOH . T 5 HOH E 18 518 114 HOH HOH . T 5 HOH E 19 519 78 HOH HOH . T 5 HOH E 20 520 122 HOH HOH . T 5 HOH E 21 521 42 HOH HOH . T 5 HOH E 22 522 110 HOH HOH . T 5 HOH E 23 523 67 HOH HOH . T 5 HOH E 24 524 48 HOH HOH . T 5 HOH E 25 525 9 HOH HOH . T 5 HOH E 26 526 39 HOH HOH . T 5 HOH E 27 527 84 HOH HOH . T 5 HOH E 28 528 4 HOH HOH . T 5 HOH E 29 529 99 HOH HOH . T 5 HOH E 30 530 108 HOH HOH . T 5 HOH E 31 531 107 HOH HOH . T 5 HOH E 32 532 63 HOH HOH . T 5 HOH E 33 533 102 HOH HOH . T 5 HOH E 34 534 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 64Z . . . O 3 73.009 33.936 68.341 1 90.14 ? C1 64Z 402 E 1 HETATM 2 C C2 64Z . . . O 3 72.153 33.015 67.871 1 94.83 ? C2 64Z 402 E 1 HETATM 3 C C3 64Z . . . O 3 71.637 33.031 66.454 1 98.65 ? C3 64Z 402 E 1 HETATM 4 C C4 64Z . . . O 3 70.197 32.581 66.541 1 101.62 ? C4 64Z 402 E 1 HETATM 5 C C5 64Z . . . O 3 69.448 33.057 65.321 1 104.04 ? C5 64Z 402 E 1 HETATM 6 C C6 64Z . . . O 3 68.492 32.278 64.801 1 103.96 ? C6 64Z 402 E 1 HETATM 7 C C7 64Z . . . O 3 67.709 32.711 63.582 1 102.83 ? C7 64Z 402 E 1 HETATM 8 C C8 64Z . . . O 3 69.757 34.387 64.675 1 105.55 ? C8 64Z 402 E 1 HETATM 9 C C9 64Z . . . O 3 73.442 33.815 69.778 1 88.7 ? C9 64Z 402 E 1 HETATM 10 O O 64Z . . . O 3 66.751 33.687 63.927 1 100.82 ? O 64Z 402 E 1 HETATM 11 C C 64Z . . . O 3 73.526 35.063 67.476 1 88.71 ? C 64Z 402 E 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #