data_5HT4 # _model_server_result.job_id PPNJqp5KoQQ3uLb95XX3Cw _model_server_result.datetime_utc '2024-11-22 22:14:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ht4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5HT4 # _exptl.entry_id 5HT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.42 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-ethyl-6-[(3-methoxyphenyl)sulfanyl]-5-methyl-7H-pyrrolo[2,3-d]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HT4 _cell.length_a 85.68 _cell.length_b 85.68 _cell.length_c 77.026 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C PA NDP . A NDP 202 1_555 D O3 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.575 ? covale ? covale2 C PA NDP . A NDP 202 1_555 D O4 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.551 ? covale ? covale3 C O1A NDP . A NDP 202 1_555 D S SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? covale ? covale4 C O5B NDP . A NDP 202 1_555 D S SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale5 C O2B NDP . A NDP 202 1_555 E S SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 C P2B NDP . A NDP 202 1_555 E O2 SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C16 H19 N5 O S' _chem_comp.formula_weight 329.42 _chem_comp.id 65J _chem_comp.mon_nstd_flag . _chem_comp.name 7-ethyl-6-[(3-methoxyphenyl)sulfanyl]-5-methyl-7H-pyrrolo[2,3-d]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAD C2 65J sing 1 n n C2 N3 65J doub 2 n y C2 N1 65J sing 3 n y N3 C4 65J sing 4 n y CAA CAJ 65J sing 5 n n N1 C6 65J doub 6 n y CAJ NAW 65J sing 7 n n C4 NAW 65J sing 8 n y C4 C5 65J doub 9 n y NAW CAT 65J sing 10 n y C6 C5 65J sing 11 n y C6 NAE 65J sing 12 n n C5 CAS 65J sing 13 n y CAT CAS 65J doub 14 n y CAT SAN 65J sing 15 n n CAS CAC 65J sing 16 n n CAB OAM 65J sing 17 n n OAM CAO 65J sing 18 n n CAG CAF 65J doub 19 n y CAG CAO 65J sing 20 n y CAF CAH 65J sing 21 n y CAO CAI 65J doub 22 n y CAH CAQ 65J doub 23 n y CAI CAQ 65J sing 24 n y CAQ SAN 65J sing 25 n n CAA H1 65J sing 26 n n CAA H2 65J sing 27 n n CAA H3 65J sing 28 n n CAJ H4 65J sing 29 n n CAJ H5 65J sing 30 n n NAD H6 65J sing 31 n n NAD H7 65J sing 32 n n NAE H8 65J sing 33 n n NAE H9 65J sing 34 n n CAC H10 65J sing 35 n n CAC H11 65J sing 36 n n CAC H12 65J sing 37 n n CAI H13 65J sing 38 n n CAH H14 65J sing 39 n n CAF H15 65J sing 40 n n CAG H16 65J sing 41 n n CAB H17 65J sing 42 n n CAB H18 65J sing 43 n n CAB H19 65J sing 44 n n # _atom_sites.entry_id 5HT4 _atom_sites.fract_transf_matrix[1][1] 0.011671 _atom_sites.fract_transf_matrix[1][2] 0.006738 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 65J A 1 201 1 65J DRG . C 3 NDP A 1 202 1 NDP NDP . D 4 SO4 A 1 203 1 SO4 SO4 . E 4 SO4 A 1 204 2 SO4 SO4 . F 5 HOH A 1 301 24 HOH HOH . F 5 HOH A 2 302 69 HOH HOH . F 5 HOH A 3 303 34 HOH HOH . F 5 HOH A 4 304 38 HOH HOH . F 5 HOH A 5 305 56 HOH HOH . F 5 HOH A 6 306 64 HOH HOH . F 5 HOH A 7 307 58 HOH HOH . F 5 HOH A 8 308 76 HOH HOH . F 5 HOH A 9 309 17 HOH HOH . F 5 HOH A 10 310 59 HOH HOH . F 5 HOH A 11 311 44 HOH HOH . F 5 HOH A 12 312 25 HOH HOH . F 5 HOH A 13 313 74 HOH HOH . F 5 HOH A 14 314 5 HOH HOH . F 5 HOH A 15 315 65 HOH HOH . F 5 HOH A 16 316 72 HOH HOH . F 5 HOH A 17 317 78 HOH HOH . F 5 HOH A 18 318 61 HOH HOH . F 5 HOH A 19 319 70 HOH HOH . F 5 HOH A 20 320 51 HOH HOH . F 5 HOH A 21 321 42 HOH HOH . F 5 HOH A 22 322 41 HOH HOH . F 5 HOH A 23 323 52 HOH HOH . F 5 HOH A 24 324 6 HOH HOH . F 5 HOH A 25 325 57 HOH HOH . F 5 HOH A 26 326 37 HOH HOH . F 5 HOH A 27 327 22 HOH HOH . F 5 HOH A 28 328 11 HOH HOH . F 5 HOH A 29 329 29 HOH HOH . F 5 HOH A 30 330 4 HOH HOH . F 5 HOH A 31 331 40 HOH HOH . F 5 HOH A 32 332 31 HOH HOH . F 5 HOH A 33 333 12 HOH HOH . F 5 HOH A 34 334 77 HOH HOH . F 5 HOH A 35 335 43 HOH HOH . F 5 HOH A 36 336 9 HOH HOH . F 5 HOH A 37 337 3 HOH HOH . F 5 HOH A 38 338 62 HOH HOH . F 5 HOH A 39 339 15 HOH HOH . F 5 HOH A 40 340 46 HOH HOH . F 5 HOH A 41 341 21 HOH HOH . F 5 HOH A 42 342 16 HOH HOH . F 5 HOH A 43 343 48 HOH HOH . F 5 HOH A 44 344 13 HOH HOH . F 5 HOH A 45 345 18 HOH HOH . F 5 HOH A 46 346 23 HOH HOH . F 5 HOH A 47 347 1 HOH HOH . F 5 HOH A 48 348 19 HOH HOH . F 5 HOH A 49 349 35 HOH HOH . F 5 HOH A 50 350 27 HOH HOH . F 5 HOH A 51 351 14 HOH HOH . F 5 HOH A 52 352 63 HOH HOH . F 5 HOH A 53 353 8 HOH HOH . F 5 HOH A 54 354 50 HOH HOH . F 5 HOH A 55 355 30 HOH HOH . F 5 HOH A 56 356 36 HOH HOH . F 5 HOH A 57 357 39 HOH HOH . F 5 HOH A 58 358 66 HOH HOH . F 5 HOH A 59 359 28 HOH HOH . F 5 HOH A 60 360 7 HOH HOH . F 5 HOH A 61 361 2 HOH HOH . F 5 HOH A 62 362 26 HOH HOH . F 5 HOH A 63 363 54 HOH HOH . F 5 HOH A 64 364 47 HOH HOH . F 5 HOH A 65 365 45 HOH HOH . F 5 HOH A 66 366 20 HOH HOH . F 5 HOH A 67 367 60 HOH HOH . F 5 HOH A 68 368 73 HOH HOH . F 5 HOH A 69 369 68 HOH HOH . F 5 HOH A 70 370 75 HOH HOH . F 5 HOH A 71 371 53 HOH HOH . F 5 HOH A 72 372 67 HOH HOH . F 5 HOH A 73 373 49 HOH HOH . F 5 HOH A 74 374 33 HOH HOH . F 5 HOH A 75 375 55 HOH HOH . F 5 HOH A 76 376 71 HOH HOH . F 5 HOH A 77 377 32 HOH HOH . F 5 HOH A 78 378 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 65J . . . B 2 -3.152 17.95 -1.764 1 24.96 ? C4 65J 201 A 1 HETATM 2 C C5 65J . . . B 2 -2.847 18.785 -0.707 1 23.8 ? C5 65J 201 A 1 HETATM 3 C C6 65J . . . B 2 -2.517 20.127 -0.999 1 17.36 ? C6 65J 201 A 1 HETATM 4 N N1 65J . . . B 2 -2.544 20.595 -2.26 1 19.84 ? N1 65J 201 A 1 HETATM 5 N N3 65J . . . B 2 -3.16 18.426 -3.062 1 23.37 ? N3 65J 201 A 1 HETATM 6 C CAA 65J . . . B 2 -2.648 14.819 -2.925 1 26.23 ? CAA 65J 201 A 1 HETATM 7 C CAJ 65J . . . B 2 -3.803 15.458 -2.104 1 31.04 ? CAJ 65J 201 A 1 HETATM 8 N NAW 65J . . . B 2 -3.434 16.689 -1.334 1 28.12 ? NAW 65J 201 A 1 HETATM 9 C C2 65J . . . B 2 -2.864 19.731 -3.293 1 18.67 ? C2 65J 201 A 1 HETATM 10 N NAD 65J . . . B 2 -2.89 20.182 -4.581 1 19.91 ? NAD 65J 201 A 1 HETATM 11 N NAE 65J . . . B 2 -2.186 20.991 -0.011 1 19.23 ? NAE 65J 201 A 1 HETATM 12 C CAS 65J . . . B 2 -2.931 17.979 0.42 1 25.91 ? CAS 65J 201 A 1 HETATM 13 C CAC 65J . . . B 2 -2.617 18.256 1.954 1 27.3 ? CAC 65J 201 A 1 HETATM 14 C CAT 65J . . . B 2 -3.274 16.707 0.009 1 27.15 ? CAT 65J 201 A 1 HETATM 15 S SAN 65J . . . B 2 -3.566 15.129 1.255 1 31.73 ? SAN 65J 201 A 1 HETATM 16 C CAQ 65J . . . B 2 -2.103 14.213 1.119 1 31.13 ? CAQ 65J 201 A 1 HETATM 17 C CAI 65J . . . B 2 -2.085 12.772 1.101 1 28.2 ? CAI 65J 201 A 1 HETATM 18 C CAH 65J . . . B 2 -0.904 14.906 1.071 1 25.13 ? CAH 65J 201 A 1 HETATM 19 C CAF 65J . . . B 2 0.278 14.187 0.926 1 33.73 ? CAF 65J 201 A 1 HETATM 20 C CAG 65J . . . B 2 0.322 12.771 0.894 1 29.15 ? CAG 65J 201 A 1 HETATM 21 C CAO 65J . . . B 2 -0.861 12.059 0.949 1 33.28 ? CAO 65J 201 A 1 HETATM 22 O OAM 65J . . . B 2 -0.781 10.656 0.88 1 31.28 ? OAM 65J 201 A 1 HETATM 23 C CAB 65J . . . B 2 -2.062 9.983 0.668 1 31.52 ? CAB 65J 201 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #