data_5HT4
#
_model_server_result.job_id            s2ZR6VN6zYgSnO12i3khOQ 
_model_server_result.datetime_utc      '2024-11-26 10:18:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ht4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5HT4 
#
_exptl.entry_id    5HT4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HT4 
_cell.length_a            85.68 
_cell.length_b            85.68 
_cell.length_c            77.026 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HT4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C PA NDP . A NDP 202 1_555 D O3 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.575 ? 
covale ? covale2 C PA NDP . A NDP 202 1_555 D O4 SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.551 ? 
covale ? covale3 C O1A NDP . A NDP 202 1_555 D S SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? 
covale ? covale4 C O5B NDP . A NDP 202 1_555 D S SO4 . A SO4 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? 
covale ? covale5 C O2B NDP . A NDP 202 1_555 E S SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale6 C P2B NDP . A NDP 202 1_555 E O2 SO4 . A SO4 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 281 n n 
PA O2A NDP sing 282 n n 
PA O5B NDP sing 283 n n 
PA O3 NDP sing 284 n n 
O2A HOA2 NDP sing 285 n n 
O5B C5B NDP sing 286 n n 
C5B C4B NDP sing 287 n n 
C5B H51A NDP sing 288 n n 
C5B H52A NDP sing 289 n n 
C4B O4B NDP sing 290 n n 
C4B C3B NDP sing 291 n n 
C4B H4B NDP sing 292 n n 
O4B C1B NDP sing 293 n n 
C3B O3B NDP sing 294 n n 
C3B C2B NDP sing 295 n n 
C3B H3B NDP sing 296 n n 
O3B HO3A NDP sing 297 n n 
C2B O2B NDP sing 298 n n 
C2B C1B NDP sing 299 n n 
C2B H2B NDP sing 300 n n 
O2B P2B NDP sing 301 n n 
C1B N9A NDP sing 302 n n 
C1B H1B NDP sing 303 n n 
N9A C8A NDP sing 304 n y 
N9A C4A NDP sing 305 n y 
C8A N7A NDP doub 306 n y 
C8A H8A NDP sing 307 n n 
N7A C5A NDP sing 308 n y 
C5A C6A NDP sing 309 n y 
C5A C4A NDP doub 310 n y 
C6A N6A NDP sing 311 n n 
C6A N1A NDP doub 312 n y 
N6A H61A NDP sing 313 n n 
N6A H62A NDP sing 314 n n 
N1A C2A NDP sing 315 n y 
C2A N3A NDP doub 316 n y 
C2A H2A NDP sing 317 n n 
N3A C4A NDP sing 318 n y 
O3 PN NDP sing 319 n n 
PN O1N NDP doub 320 n n 
PN O2N NDP sing 321 n n 
PN O5D NDP sing 322 n n 
O2N H21N NDP sing 323 n n 
O5D C5D NDP sing 324 n n 
C5D C4D NDP sing 325 n n 
C5D H51N NDP sing 326 n n 
C5D H52N NDP sing 327 n n 
C4D O4D NDP sing 328 n n 
C4D C3D NDP sing 329 n n 
C4D H4D NDP sing 330 n n 
O4D C1D NDP sing 331 n n 
C3D O3D NDP sing 332 n n 
C3D C2D NDP sing 333 n n 
C3D H3D NDP sing 334 n n 
O3D HO3N NDP sing 335 n n 
C2D O2D NDP sing 336 n n 
C2D C1D NDP sing 337 n n 
C2D H2D NDP sing 338 n n 
O2D HO2N NDP sing 339 n n 
C1D N1N NDP sing 340 n n 
C1D H1D NDP sing 341 n n 
N1N C2N NDP sing 342 n n 
N1N C6N NDP sing 343 n n 
C2N C3N NDP doub 344 n n 
C2N H2N NDP sing 345 n n 
C3N C7N NDP sing 346 n n 
C3N C4N NDP sing 347 n n 
C7N O7N NDP doub 348 n n 
C7N N7N NDP sing 349 n n 
N7N H71N NDP sing 350 n n 
N7N H72N NDP sing 351 n n 
C4N C5N NDP sing 352 n n 
C4N H41N NDP sing 353 n n 
C4N H42N NDP sing 354 n n 
C5N C6N NDP doub 355 n n 
C5N H5N NDP sing 356 n n 
C6N H6N NDP sing 357 n n 
P2B O1X NDP doub 358 n n 
P2B O2X NDP sing 359 n n 
P2B O3X NDP sing 360 n n 
O2X HOP2 NDP sing 361 n n 
O3X HOP3 NDP sing 362 n n 
#
_atom_sites.entry_id                     5HT4 
_atom_sites.fract_transf_matrix[1][1]    0.011671 
_atom_sites.fract_transf_matrix[1][2]    0.006738 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012983 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 65J A 1 201 1 65J DRG . 
C 3 NDP A 1 202 1 NDP NDP . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 4 SO4 A 1 204 2 SO4 SO4 . 
F 5 HOH A 1 301 24 HOH HOH . 
F 5 HOH A 2 302 69 HOH HOH . 
F 5 HOH A 3 303 34 HOH HOH . 
F 5 HOH A 4 304 38 HOH HOH . 
F 5 HOH A 5 305 56 HOH HOH . 
F 5 HOH A 6 306 64 HOH HOH . 
F 5 HOH A 7 307 58 HOH HOH . 
F 5 HOH A 8 308 76 HOH HOH . 
F 5 HOH A 9 309 17 HOH HOH . 
F 5 HOH A 10 310 59 HOH HOH . 
F 5 HOH A 11 311 44 HOH HOH . 
F 5 HOH A 12 312 25 HOH HOH . 
F 5 HOH A 13 313 74 HOH HOH . 
F 5 HOH A 14 314 5 HOH HOH . 
F 5 HOH A 15 315 65 HOH HOH . 
F 5 HOH A 16 316 72 HOH HOH . 
F 5 HOH A 17 317 78 HOH HOH . 
F 5 HOH A 18 318 61 HOH HOH . 
F 5 HOH A 19 319 70 HOH HOH . 
F 5 HOH A 20 320 51 HOH HOH . 
F 5 HOH A 21 321 42 HOH HOH . 
F 5 HOH A 22 322 41 HOH HOH . 
F 5 HOH A 23 323 52 HOH HOH . 
F 5 HOH A 24 324 6 HOH HOH . 
F 5 HOH A 25 325 57 HOH HOH . 
F 5 HOH A 26 326 37 HOH HOH . 
F 5 HOH A 27 327 22 HOH HOH . 
F 5 HOH A 28 328 11 HOH HOH . 
F 5 HOH A 29 329 29 HOH HOH . 
F 5 HOH A 30 330 4 HOH HOH . 
F 5 HOH A 31 331 40 HOH HOH . 
F 5 HOH A 32 332 31 HOH HOH . 
F 5 HOH A 33 333 12 HOH HOH . 
F 5 HOH A 34 334 77 HOH HOH . 
F 5 HOH A 35 335 43 HOH HOH . 
F 5 HOH A 36 336 9 HOH HOH . 
F 5 HOH A 37 337 3 HOH HOH . 
F 5 HOH A 38 338 62 HOH HOH . 
F 5 HOH A 39 339 15 HOH HOH . 
F 5 HOH A 40 340 46 HOH HOH . 
F 5 HOH A 41 341 21 HOH HOH . 
F 5 HOH A 42 342 16 HOH HOH . 
F 5 HOH A 43 343 48 HOH HOH . 
F 5 HOH A 44 344 13 HOH HOH . 
F 5 HOH A 45 345 18 HOH HOH . 
F 5 HOH A 46 346 23 HOH HOH . 
F 5 HOH A 47 347 1 HOH HOH . 
F 5 HOH A 48 348 19 HOH HOH . 
F 5 HOH A 49 349 35 HOH HOH . 
F 5 HOH A 50 350 27 HOH HOH . 
F 5 HOH A 51 351 14 HOH HOH . 
F 5 HOH A 52 352 63 HOH HOH . 
F 5 HOH A 53 353 8 HOH HOH . 
F 5 HOH A 54 354 50 HOH HOH . 
F 5 HOH A 55 355 30 HOH HOH . 
F 5 HOH A 56 356 36 HOH HOH . 
F 5 HOH A 57 357 39 HOH HOH . 
F 5 HOH A 58 358 66 HOH HOH . 
F 5 HOH A 59 359 28 HOH HOH . 
F 5 HOH A 60 360 7 HOH HOH . 
F 5 HOH A 61 361 2 HOH HOH . 
F 5 HOH A 62 362 26 HOH HOH . 
F 5 HOH A 63 363 54 HOH HOH . 
F 5 HOH A 64 364 47 HOH HOH . 
F 5 HOH A 65 365 45 HOH HOH . 
F 5 HOH A 66 366 20 HOH HOH . 
F 5 HOH A 67 367 60 HOH HOH . 
F 5 HOH A 68 368 73 HOH HOH . 
F 5 HOH A 69 369 68 HOH HOH . 
F 5 HOH A 70 370 75 HOH HOH . 
F 5 HOH A 71 371 53 HOH HOH . 
F 5 HOH A 72 372 67 HOH HOH . 
F 5 HOH A 73 373 49 HOH HOH . 
F 5 HOH A 74 374 33 HOH HOH . 
F 5 HOH A 75 375 55 HOH HOH . 
F 5 HOH A 76 376 71 HOH HOH . 
F 5 HOH A 77 377 32 HOH HOH . 
F 5 HOH A 78 378 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 3 -6.227 22.843 9.923 0.5 27.63 ? PA NDP 202 A 1 
HETATM 2 O O1A NDP . . . C 3 -6.267 24.289 9.671 0.5 25.2 ? O1A NDP 202 A 1 
HETATM 3 O O2A NDP . . . C 3 -5.225 21.964 9.293 0.5 21.49 ? O2A NDP 202 A 1 
HETATM 4 O O5B NDP . . . C 3 -6.066 22.553 11.462 0.5 21.39 ? O5B NDP 202 A 1 
HETATM 5 C C5B NDP . . . C 3 -6.791 23.194 12.447 0.5 17.22 ? C5B NDP 202 A 1 
HETATM 6 C C4B NDP . . . C 3 -5.86 23.171 13.648 0.5 20.83 ? C4B NDP 202 A 1 
HETATM 7 O O4B NDP . . . C 3 -4.491 23.584 13.341 0.5 18.79 ? O4B NDP 202 A 1 
HETATM 8 C C3B NDP . . . C 3 -6.431 24.187 14.535 0.5 19.71 ? C3B NDP 202 A 1 
HETATM 9 O O3B NDP . . . C 3 -7.39 23.375 15.314 0.5 20.11 ? O3B NDP 202 A 1 
HETATM 10 C C2B NDP . . . C 3 -5.197 24.708 15.319 0.5 21.93 ? C2B NDP 202 A 1 
HETATM 11 O O2B NDP . . . C 3 -4.818 23.847 16.317 0.5 26.27 ? O2B NDP 202 A 1 
HETATM 12 C C1B NDP . . . C 3 -4.068 24.57 14.294 0.5 20.4 ? C1B NDP 202 A 1 
HETATM 13 N N9A NDP . . . C 3 -3.842 25.758 13.447 0.5 19.06 ? N9A NDP 202 A 1 
HETATM 14 C C8A NDP . . . C 3 -4.235 26.121 12.236 0.5 17.65 ? C8A NDP 202 A 1 
HETATM 15 N N7A NDP . . . C 3 -3.644 27.331 12.005 0.5 18.61 ? N7A NDP 202 A 1 
HETATM 16 C C5A NDP . . . C 3 -2.849 27.657 13.001 0.5 18.19 ? C5A NDP 202 A 1 
HETATM 17 C C6A NDP . . . C 3 -2.036 28.69 13.264 0.5 21.06 ? C6A NDP 202 A 1 
HETATM 18 N N6A NDP . . . C 3 -1.905 29.71 12.38 0.5 20.96 ? N6A NDP 202 A 1 
HETATM 19 N N1A NDP . . . C 3 -1.372 28.689 14.426 0.5 20.14 ? N1A NDP 202 A 1 
HETATM 20 C C2A NDP . . . C 3 -1.522 27.662 15.36 0.5 18.41 ? C2A NDP 202 A 1 
HETATM 21 N N3A NDP . . . C 3 -2.366 26.595 15.08 0.5 17.7 ? N3A NDP 202 A 1 
HETATM 22 C C4A NDP . . . C 3 -2.992 26.66 13.911 0.5 21.03 ? C4A NDP 202 A 1 
HETATM 23 O O3 NDP . . . C 3 -7.59 22.046 9.611 0.5 23.3 ? O3 NDP 202 A 1 
HETATM 24 P PN NDP . . . C 3 -8.785 22.277 8.572 0.5 19.36 ? PN NDP 202 A 1 
HETATM 25 O O1N NDP . . . C 3 -8.894 23.623 7.966 0.5 19.28 ? O1N NDP 202 A 1 
HETATM 26 O O2N NDP . . . C 3 -9.936 21.782 9.354 0.5 20.46 ? O2N NDP 202 A 1 
HETATM 27 O O5D NDP . . . C 3 -8.179 21.27 7.437 0.5 18.47 ? O5D NDP 202 A 1 
HETATM 28 C C5D NDP . . . C 3 -8.296 19.879 7.442 0.5 19.02 ? C5D NDP 202 A 1 
HETATM 29 C C4D NDP . . . C 3 -9.269 19.439 6.296 0.5 17.77 ? C4D NDP 202 A 1 
HETATM 30 O O4D NDP . . . C 3 -8.893 19.896 4.899 0.5 18.21 ? O4D NDP 202 A 1 
HETATM 31 C C3D NDP . . . C 3 -9.086 18.011 6.243 0.5 15.91 ? C3D NDP 202 A 1 
HETATM 32 O O3D NDP . . . C 3 -10.309 17.442 5.761 0.5 13.6 ? O3D NDP 202 A 1 
HETATM 33 C C2D NDP . . . C 3 -7.912 17.751 5.279 0.5 15.48 ? C2D NDP 202 A 1 
HETATM 34 O O2D NDP . . . C 3 -8.107 16.495 4.584 0.5 15.91 ? O2D NDP 202 A 1 
HETATM 35 C C1D NDP . . . C 3 -8.198 18.798 4.215 0.5 16.84 ? C1D NDP 202 A 1 
HETATM 36 N N1N NDP . . . C 3 -7.081 19.468 3.485 0.5 15.94 ? N1N NDP 202 A 1 
HETATM 37 C C2N NDP . . . C 3 -7.218 19.549 2.063 0.5 14.39 ? C2N NDP 202 A 1 
HETATM 38 C C3N NDP . . . C 3 -6.301 20.19 1.245 0.5 14.26 ? C3N NDP 202 A 1 
HETATM 39 C C7N NDP . . . C 3 -6.448 20.247 -0.156 0.5 12.41 ? C7N NDP 202 A 1 
HETATM 40 O O7N NDP . . . C 3 -5.531 20.59 -0.81 0.5 12.1 ? O7N NDP 202 A 1 
HETATM 41 N N7N NDP . . . C 3 -7.506 19.756 -0.744 0.5 12.96 ? N7N NDP 202 A 1 
HETATM 42 C C4N NDP . . . C 3 -5.222 20.829 1.878 0.5 12.74 ? C4N NDP 202 A 1 
HETATM 43 C C5N NDP . . . C 3 -5.058 20.693 3.277 0.5 15.32 ? C5N NDP 202 A 1 
HETATM 44 C C6N NDP . . . C 3 -5.931 20.07 4.133 0.5 13.72 ? C6N NDP 202 A 1 
HETATM 45 P P2B NDP . . . C 3 -5.21 24.101 17.864 0.5 26.38 ? P2B NDP 202 A 1 
HETATM 46 O O1X NDP . . . C 3 -4.647 25.395 18.308 0.5 25.08 ? O1X NDP 202 A 1 
HETATM 47 O O2X NDP . . . C 3 -6.859 23.96 17.86 0.5 27.83 ? O2X NDP 202 A 1 
HETATM 48 O O3X NDP . . . C 3 -4.498 22.863 18.601 0.5 28.44 ? O3X NDP 202 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#