data_5HT5
#
_model_server_result.job_id            5-soqGm6aEePslpwNN6RdA 
_model_server_result.datetime_utc      '2024-11-08 15:58:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ht5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5HT5 
#
_exptl.entry_id    5HT5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HT5 
_cell.length_a            85.461 
_cell.length_b            85.461 
_cell.length_c            77.675 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HT5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 278 n n 
PA O2A NDP sing 279 n n 
PA O5B NDP sing 280 n n 
PA O3 NDP sing 281 n n 
O2A HOA2 NDP sing 282 n n 
O5B C5B NDP sing 283 n n 
C5B C4B NDP sing 284 n n 
C5B H51A NDP sing 285 n n 
C5B H52A NDP sing 286 n n 
C4B O4B NDP sing 287 n n 
C4B C3B NDP sing 288 n n 
C4B H4B NDP sing 289 n n 
O4B C1B NDP sing 290 n n 
C3B O3B NDP sing 291 n n 
C3B C2B NDP sing 292 n n 
C3B H3B NDP sing 293 n n 
O3B HO3A NDP sing 294 n n 
C2B O2B NDP sing 295 n n 
C2B C1B NDP sing 296 n n 
C2B H2B NDP sing 297 n n 
O2B P2B NDP sing 298 n n 
C1B N9A NDP sing 299 n n 
C1B H1B NDP sing 300 n n 
N9A C8A NDP sing 301 n y 
N9A C4A NDP sing 302 n y 
C8A N7A NDP doub 303 n y 
C8A H8A NDP sing 304 n n 
N7A C5A NDP sing 305 n y 
C5A C6A NDP sing 306 n y 
C5A C4A NDP doub 307 n y 
C6A N6A NDP sing 308 n n 
C6A N1A NDP doub 309 n y 
N6A H61A NDP sing 310 n n 
N6A H62A NDP sing 311 n n 
N1A C2A NDP sing 312 n y 
C2A N3A NDP doub 313 n y 
C2A H2A NDP sing 314 n n 
N3A C4A NDP sing 315 n y 
O3 PN NDP sing 316 n n 
PN O1N NDP doub 317 n n 
PN O2N NDP sing 318 n n 
PN O5D NDP sing 319 n n 
O2N H21N NDP sing 320 n n 
O5D C5D NDP sing 321 n n 
C5D C4D NDP sing 322 n n 
C5D H51N NDP sing 323 n n 
C5D H52N NDP sing 324 n n 
C4D O4D NDP sing 325 n n 
C4D C3D NDP sing 326 n n 
C4D H4D NDP sing 327 n n 
O4D C1D NDP sing 328 n n 
C3D O3D NDP sing 329 n n 
C3D C2D NDP sing 330 n n 
C3D H3D NDP sing 331 n n 
O3D HO3N NDP sing 332 n n 
C2D O2D NDP sing 333 n n 
C2D C1D NDP sing 334 n n 
C2D H2D NDP sing 335 n n 
O2D HO2N NDP sing 336 n n 
C1D N1N NDP sing 337 n n 
C1D H1D NDP sing 338 n n 
N1N C2N NDP sing 339 n n 
N1N C6N NDP sing 340 n n 
C2N C3N NDP doub 341 n n 
C2N H2N NDP sing 342 n n 
C3N C7N NDP sing 343 n n 
C3N C4N NDP sing 344 n n 
C7N O7N NDP doub 345 n n 
C7N N7N NDP sing 346 n n 
N7N H71N NDP sing 347 n n 
N7N H72N NDP sing 348 n n 
C4N C5N NDP sing 349 n n 
C4N H41N NDP sing 350 n n 
C4N H42N NDP sing 351 n n 
C5N C6N NDP doub 352 n n 
C5N H5N NDP sing 353 n n 
C6N H6N NDP sing 354 n n 
P2B O1X NDP doub 355 n n 
P2B O2X NDP sing 356 n n 
P2B O3X NDP sing 357 n n 
O2X HOP2 NDP sing 358 n n 
O3X HOP3 NDP sing 359 n n 
#
_atom_sites.entry_id                     5HT5 
_atom_sites.fract_transf_matrix[1][1]    0.011701 
_atom_sites.fract_transf_matrix[1][2]    0.006756 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012874 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 201 1 NDP NDP . 
C 3 65H A 1 202 1 65H DRG . 
D 4 HOH A 1 301 71 HOH HOH . 
D 4 HOH A 2 302 73 HOH HOH . 
D 4 HOH A 3 303 69 HOH HOH . 
D 4 HOH A 4 304 3 HOH HOH . 
D 4 HOH A 5 305 29 HOH HOH . 
D 4 HOH A 6 306 47 HOH HOH . 
D 4 HOH A 7 307 12 HOH HOH . 
D 4 HOH A 8 308 26 HOH HOH . 
D 4 HOH A 9 309 59 HOH HOH . 
D 4 HOH A 10 310 60 HOH HOH . 
D 4 HOH A 11 311 6 HOH HOH . 
D 4 HOH A 12 312 43 HOH HOH . 
D 4 HOH A 13 313 36 HOH HOH . 
D 4 HOH A 14 314 14 HOH HOH . 
D 4 HOH A 15 315 33 HOH HOH . 
D 4 HOH A 16 316 24 HOH HOH . 
D 4 HOH A 17 317 50 HOH HOH . 
D 4 HOH A 18 318 65 HOH HOH . 
D 4 HOH A 19 319 62 HOH HOH . 
D 4 HOH A 20 320 16 HOH HOH . 
D 4 HOH A 21 321 4 HOH HOH . 
D 4 HOH A 22 322 41 HOH HOH . 
D 4 HOH A 23 323 44 HOH HOH . 
D 4 HOH A 24 324 30 HOH HOH . 
D 4 HOH A 25 325 48 HOH HOH . 
D 4 HOH A 26 326 15 HOH HOH . 
D 4 HOH A 27 327 32 HOH HOH . 
D 4 HOH A 28 328 68 HOH HOH . 
D 4 HOH A 29 329 49 HOH HOH . 
D 4 HOH A 30 330 54 HOH HOH . 
D 4 HOH A 31 331 40 HOH HOH . 
D 4 HOH A 32 332 2 HOH HOH . 
D 4 HOH A 33 333 9 HOH HOH . 
D 4 HOH A 34 334 18 HOH HOH . 
D 4 HOH A 35 335 31 HOH HOH . 
D 4 HOH A 36 336 75 HOH HOH . 
D 4 HOH A 37 337 56 HOH HOH . 
D 4 HOH A 38 338 37 HOH HOH . 
D 4 HOH A 39 339 51 HOH HOH . 
D 4 HOH A 40 340 52 HOH HOH . 
D 4 HOH A 41 341 46 HOH HOH . 
D 4 HOH A 42 342 17 HOH HOH . 
D 4 HOH A 43 343 7 HOH HOH . 
D 4 HOH A 44 344 25 HOH HOH . 
D 4 HOH A 45 345 1 HOH HOH . 
D 4 HOH A 46 346 22 HOH HOH . 
D 4 HOH A 47 347 10 HOH HOH . 
D 4 HOH A 48 348 63 HOH HOH . 
D 4 HOH A 49 349 57 HOH HOH . 
D 4 HOH A 50 350 8 HOH HOH . 
D 4 HOH A 51 351 13 HOH HOH . 
D 4 HOH A 52 352 5 HOH HOH . 
D 4 HOH A 53 353 61 HOH HOH . 
D 4 HOH A 54 354 11 HOH HOH . 
D 4 HOH A 55 355 55 HOH HOH . 
D 4 HOH A 56 356 53 HOH HOH . 
D 4 HOH A 57 357 76 HOH HOH . 
D 4 HOH A 58 358 27 HOH HOH . 
D 4 HOH A 59 359 21 HOH HOH . 
D 4 HOH A 60 360 28 HOH HOH . 
D 4 HOH A 61 361 38 HOH HOH . 
D 4 HOH A 62 362 34 HOH HOH . 
D 4 HOH A 63 363 35 HOH HOH . 
D 4 HOH A 64 364 72 HOH HOH . 
D 4 HOH A 65 365 42 HOH HOH . 
D 4 HOH A 66 366 58 HOH HOH . 
D 4 HOH A 67 367 67 HOH HOH . 
D 4 HOH A 68 368 66 HOH HOH . 
D 4 HOH A 69 369 70 HOH HOH . 
D 4 HOH A 70 370 20 HOH HOH . 
D 4 HOH A 71 371 45 HOH HOH . 
D 4 HOH A 72 372 23 HOH HOH . 
D 4 HOH A 73 373 74 HOH HOH . 
D 4 HOH A 74 374 64 HOH HOH . 
D 4 HOH A 75 375 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . B 2 22.519 6.137 -9.92 1 26.07 ? PA NDP 201 A 1 
HETATM 2 O O1A NDP . . . B 2 23.657 7.043 -9.583 1 29.61 ? O1A NDP 201 A 1 
HETATM 3 O O2A NDP . . . B 2 21.162 6.486 -9.317 1 27.7 ? O2A NDP 201 A 1 
HETATM 4 O O5B NDP . . . B 2 22.291 6.041 -11.471 1 24.35 ? O5B NDP 201 A 1 
HETATM 5 C C5B NDP . . . B 2 23.455 5.811 -12.313 1 28.41 ? C5B NDP 201 A 1 
HETATM 6 C C4B NDP . . . B 2 23.043 6.522 -13.645 1 31.7 ? C4B NDP 201 A 1 
HETATM 7 O O4B NDP . . . B 2 22.56 7.905 -13.417 1 36.92 ? O4B NDP 201 A 1 
HETATM 8 C C3B NDP . . . B 2 24.215 6.585 -14.643 1 33.21 ? C3B NDP 201 A 1 
HETATM 9 O O3B NDP . . . B 2 24.156 5.365 -15.444 1 30.42 ? O3B NDP 201 A 1 
HETATM 10 C C2B NDP . . . B 2 23.834 7.872 -15.488 1 35.59 ? C2B NDP 201 A 1 
HETATM 11 O O2B NDP . . . B 2 22.777 7.518 -16.39 1 34.34 ? O2B NDP 201 A 1 
HETATM 12 C C1B NDP . . . B 2 23.19 8.796 -14.379 1 35.76 ? C1B NDP 201 A 1 
HETATM 13 N N9A NDP . . . B 2 24.215 9.591 -13.587 1 36.46 ? N9A NDP 201 A 1 
HETATM 14 C C8A NDP . . . B 2 24.898 9.318 -12.45 1 36.53 ? C8A NDP 201 A 1 
HETATM 15 N N7A NDP . . . B 2 25.668 10.391 -12.199 1 38.16 ? N7A NDP 201 A 1 
HETATM 16 C C5A NDP . . . B 2 25.462 11.302 -13.148 1 36.01 ? C5A NDP 201 A 1 
HETATM 17 C C6A NDP . . . B 2 25.994 12.504 -13.382 1 37.16 ? C6A NDP 201 A 1 
HETATM 18 N N6A NDP . . . B 2 26.889 12.986 -12.518 1 38.03 ? N6A NDP 201 A 1 
HETATM 19 N N1A NDP . . . B 2 25.611 13.223 -14.44 1 39.39 ? N1A NDP 201 A 1 
HETATM 20 C C2A NDP . . . B 2 24.657 12.733 -15.363 1 38.27 ? C2A NDP 201 A 1 
HETATM 21 N N3A NDP . . . B 2 24.146 11.463 -15.132 1 36.68 ? N3A NDP 201 A 1 
HETATM 22 C C4A NDP . . . B 2 24.567 10.792 -14.027 1 38.14 ? C4A NDP 201 A 1 
HETATM 23 O O3 NDP . . . B 2 22.788 4.601 -9.678 1 28.97 ? O3 NDP 201 A 1 
HETATM 24 P PN NDP . . . B 2 23.7 3.611 -8.666 1 32.42 ? PN NDP 201 A 1 
HETATM 25 O O1N NDP . . . B 2 24.791 4.328 -7.887 1 30.27 ? O1N NDP 201 A 1 
HETATM 26 O O2N NDP . . . B 2 24.056 2.512 -9.6 1 36.57 ? O2N NDP 201 A 1 
HETATM 27 O O5D NDP . . . B 2 22.609 2.892 -7.771 1 32.73 ? O5D NDP 201 A 1 
HETATM 28 C C5D NDP . . . B 2 21.427 3.241 -7.122 1 32.88 ? C5D NDP 201 A 1 
HETATM 29 C C4D NDP . . . B 2 21.344 1.935 -6.239 1 34.03 ? C4D NDP 201 A 1 
HETATM 30 O O4D NDP . . . B 2 21.526 2.154 -4.786 1 27.97 ? O4D NDP 201 A 1 
HETATM 31 C C3D NDP . . . B 2 19.999 1.215 -6.384 1 31.51 ? C3D NDP 201 A 1 
HETATM 32 O O3D NDP . . . B 2 20.176 -0.269 -6.037 1 29.01 ? O3D NDP 201 A 1 
HETATM 33 C C2D NDP . . . B 2 19.16 1.971 -5.317 1 30.96 ? C2D NDP 201 A 1 
HETATM 34 O O2D NDP . . . B 2 18.208 1.13 -4.675 1 30.67 ? O2D NDP 201 A 1 
HETATM 35 C C1D NDP . . . B 2 20.201 2.196 -4.227 1 31.95 ? C1D NDP 201 A 1 
HETATM 36 N N1N NDP . . . B 2 20.228 3.51 -3.513 1 32.21 ? N1N NDP 201 A 1 
HETATM 37 C C2N NDP . . . B 2 20.327 3.384 -2.077 1 28.19 ? C2N NDP 201 A 1 
HETATM 38 C C3N NDP . . . B 2 20.484 4.51 -1.253 1 31.34 ? C3N NDP 201 A 1 
HETATM 39 C C7N NDP . . . B 2 20.595 4.39 0.182 1 29.99 ? C7N NDP 201 A 1 
HETATM 40 O O7N NDP . . . B 2 20.612 5.407 0.854 1 25.52 ? O7N NDP 201 A 1 
HETATM 41 N N7N NDP . . . B 2 20.707 3.145 0.765 1 24.46 ? N7N NDP 201 A 1 
HETATM 42 C C4N NDP . . . B 2 20.486 5.785 -1.938 1 31.42 ? C4N NDP 201 A 1 
HETATM 43 C C5N NDP . . . B 2 20.354 5.917 -3.344 1 29.9 ? C5N NDP 201 A 1 
HETATM 44 C C6N NDP . . . B 2 20.255 4.785 -4.193 1 28.43 ? C6N NDP 201 A 1 
HETATM 45 P P2B NDP . . . B 2 22.908 7.705 -17.928 1 30.04 ? P2B NDP 201 A 1 
HETATM 46 O O1X NDP . . . B 2 23.725 8.974 -18.22 1 27.86 ? O1X NDP 201 A 1 
HETATM 47 O O2X NDP . . . B 2 23.558 6.374 -18.346 1 27.01 ? O2X NDP 201 A 1 
HETATM 48 O O3X NDP . . . B 2 21.445 7.732 -18.556 1 31.09 ? O3X NDP 201 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           48 
#