data_5HT8 # _model_server_result.job_id BmeV7DH-ofAw2Y7LXXT63A _model_server_result.datetime_utc '2024-10-11 06:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ht8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5HT8 # _exptl.entry_id 5HT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HT8 _cell.length_a 77.687 _cell.length_b 77.687 _cell.length_c 74.623 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 18 A HIS 17 1_555 B NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A NE2 HIS 20 A HIS 19 1_555 B NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 B NI NI . A NI 101 1_555 C O HOH . A HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? metalc ? metalc4 B NI NI . A NI 101 1_555 C O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 B NI NI . A NI 101 1_555 C O HOH . A HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc6 B NI NI . A NI 101 1_555 C O HOH . A HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HT8 _atom_sites.fract_transf_matrix[1][1] 0.012872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 101 1 NI NI . C 3 HOH A 1 201 13 HOH HOH . C 3 HOH A 2 202 3 HOH HOH . C 3 HOH A 3 203 27 HOH HOH . C 3 HOH A 4 204 41 HOH HOH . C 3 HOH A 5 205 22 HOH HOH . C 3 HOH A 6 206 18 HOH HOH . C 3 HOH A 7 207 24 HOH HOH . C 3 HOH A 8 208 19 HOH HOH . C 3 HOH A 9 209 4 HOH HOH . C 3 HOH A 10 210 47 HOH HOH . C 3 HOH A 11 211 32 HOH HOH . C 3 HOH A 12 212 14 HOH HOH . C 3 HOH A 13 213 5 HOH HOH . C 3 HOH A 14 214 16 HOH HOH . C 3 HOH A 15 215 34 HOH HOH . C 3 HOH A 16 216 9 HOH HOH . C 3 HOH A 17 217 7 HOH HOH . C 3 HOH A 18 218 43 HOH HOH . C 3 HOH A 19 219 15 HOH HOH . C 3 HOH A 20 220 2 HOH HOH . C 3 HOH A 21 221 23 HOH HOH . C 3 HOH A 22 222 12 HOH HOH . C 3 HOH A 23 223 10 HOH HOH . C 3 HOH A 24 224 31 HOH HOH . C 3 HOH A 25 225 1 HOH HOH . C 3 HOH A 26 226 39 HOH HOH . C 3 HOH A 27 227 6 HOH HOH . C 3 HOH A 28 228 20 HOH HOH . C 3 HOH A 29 229 11 HOH HOH . C 3 HOH A 30 230 17 HOH HOH . C 3 HOH A 31 231 8 HOH HOH . C 3 HOH A 32 232 28 HOH HOH . C 3 HOH A 33 233 45 HOH HOH . C 3 HOH A 34 234 35 HOH HOH . C 3 HOH A 35 235 33 HOH HOH . C 3 HOH A 36 236 46 HOH HOH . C 3 HOH A 37 237 26 HOH HOH . C 3 HOH A 38 238 30 HOH HOH . C 3 HOH A 39 239 42 HOH HOH . C 3 HOH A 40 240 21 HOH HOH . C 3 HOH A 41 241 44 HOH HOH . C 3 HOH A 42 242 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 66.395 _atom_site.Cartn_y 28.055 _atom_site.Cartn_z 89.743 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #