data_5HTD # _model_server_result.job_id dBglT235BXqptjtIxz6Uzg _model_server_result.datetime_utc '2024-12-21 07:03:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5htd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5HTD # _exptl.entry_id 5HTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HTD _cell.length_a 53.486 _cell.length_b 53.486 _cell.length_c 111.039 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 y,x,-z+2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 222.078 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 237 n n C1 O2 MYR sing 238 n n C1 C2 MYR sing 239 n n O2 HO2 MYR sing 240 n n C2 C3 MYR sing 241 n n C2 H21 MYR sing 242 n n C2 H22 MYR sing 243 n n C3 C4 MYR sing 244 n n C3 H31 MYR sing 245 n n C3 H32 MYR sing 246 n n C4 C5 MYR sing 247 n n C4 H41 MYR sing 248 n n C4 H42 MYR sing 249 n n C5 C6 MYR sing 250 n n C5 H51 MYR sing 251 n n C5 H52 MYR sing 252 n n C6 C7 MYR sing 253 n n C6 H61 MYR sing 254 n n C6 H62 MYR sing 255 n n C7 C8 MYR sing 256 n n C7 H71 MYR sing 257 n n C7 H72 MYR sing 258 n n C8 C9 MYR sing 259 n n C8 H81 MYR sing 260 n n C8 H82 MYR sing 261 n n C9 C10 MYR sing 262 n n C9 H91 MYR sing 263 n n C9 H92 MYR sing 264 n n C10 C11 MYR sing 265 n n C10 H101 MYR sing 266 n n C10 H102 MYR sing 267 n n C11 C12 MYR sing 268 n n C11 H111 MYR sing 269 n n C11 H112 MYR sing 270 n n C12 C13 MYR sing 271 n n C12 H121 MYR sing 272 n n C12 H122 MYR sing 273 n n C13 C14 MYR sing 274 n n C13 H131 MYR sing 275 n n C13 H132 MYR sing 276 n n C14 H141 MYR sing 277 n n C14 H142 MYR sing 278 n n C14 H143 MYR sing 279 n n # _atom_sites.entry_id 5HTD _atom_sites.fract_transf_matrix[1][1] 0.018696 _atom_sites.fract_transf_matrix[1][2] 0.010794 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 201 1 MYR MYR . C 3 HOH A 1 301 33 HOH HOH . C 3 HOH A 2 302 31 HOH HOH . C 3 HOH A 3 303 7 HOH HOH . C 3 HOH A 4 304 37 HOH HOH . C 3 HOH A 5 305 14 HOH HOH . C 3 HOH A 6 306 12 HOH HOH . C 3 HOH A 7 307 18 HOH HOH . C 3 HOH A 8 308 20 HOH HOH . C 3 HOH A 9 309 11 HOH HOH . C 3 HOH A 10 310 13 HOH HOH . C 3 HOH A 11 311 9 HOH HOH . C 3 HOH A 12 312 15 HOH HOH . C 3 HOH A 13 313 30 HOH HOH . C 3 HOH A 14 314 2 HOH HOH . C 3 HOH A 15 315 26 HOH HOH . C 3 HOH A 16 316 8 HOH HOH . C 3 HOH A 17 317 3 HOH HOH . C 3 HOH A 18 318 5 HOH HOH . C 3 HOH A 19 319 34 HOH HOH . C 3 HOH A 20 320 25 HOH HOH . C 3 HOH A 21 321 24 HOH HOH . C 3 HOH A 22 322 35 HOH HOH . C 3 HOH A 23 323 17 HOH HOH . C 3 HOH A 24 324 27 HOH HOH . C 3 HOH A 25 325 4 HOH HOH . C 3 HOH A 26 326 32 HOH HOH . C 3 HOH A 27 327 19 HOH HOH . C 3 HOH A 28 328 36 HOH HOH . C 3 HOH A 29 329 21 HOH HOH . C 3 HOH A 30 330 10 HOH HOH . C 3 HOH A 31 331 16 HOH HOH . C 3 HOH A 32 332 28 HOH HOH . C 3 HOH A 33 333 29 HOH HOH . C 3 HOH A 34 334 22 HOH HOH . C 3 HOH A 35 335 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . B 2 0.094 4.044 128.829 0.8 43.2 ? C1 MYR 201 A 1 HETATM 2 O O1 MYR . . . B 2 -0.61 3.485 127.958 0.8 47.2 ? O1 MYR 201 A 1 HETATM 3 O O2 MYR . . . B 2 0.331 3.53 129.94 0.8 42.99 ? O2 MYR 201 A 1 HETATM 4 C C2 MYR . . . B 2 0.691 5.393 128.515 0.8 41.48 ? C2 MYR 201 A 1 HETATM 5 C C3 MYR . . . B 2 2.023 5.217 127.788 0.8 40.13 ? C3 MYR 201 A 1 HETATM 6 C C4 MYR . . . B 2 3.119 6.082 128.404 0.8 38.17 ? C4 MYR 201 A 1 HETATM 7 C C5 MYR . . . B 2 2.937 7.539 128.001 0.8 36.36 ? C5 MYR 201 A 1 HETATM 8 C C6 MYR . . . B 2 3.007 8.501 129.18 0.8 34.33 ? C6 MYR 201 A 1 HETATM 9 C C7 MYR . . . B 2 2.625 9.9 128.709 0.8 32.45 ? C7 MYR 201 A 1 HETATM 10 C C8 MYR . . . B 2 2.327 10.833 129.865 0.8 31.27 ? C8 MYR 201 A 1 HETATM 11 C C9 MYR . . . B 2 1.996 12.244 129.361 0.8 30.33 ? C9 MYR 201 A 1 HETATM 12 C C10 MYR . . . B 2 3.015 13.257 129.861 0.8 28.54 ? C10 MYR 201 A 1 HETATM 13 C C11 MYR . . . B 2 2.491 14.684 129.926 0.8 27.84 ? C11 MYR 201 A 1 HETATM 14 C C12 MYR . . . B 2 3.524 15.516 130.682 0.8 26.95 ? C12 MYR 201 A 1 HETATM 15 C C13 MYR . . . B 2 3.012 16.881 131.083 0.8 27.11 ? C13 MYR 201 A 1 HETATM 16 C C14 MYR . . . B 2 3.894 17.496 132.148 0.8 27.15 ? C14 MYR 201 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #