data_5HTF # _model_server_result.job_id lq-h6PtmwkTsolQrlcXpzg _model_server_result.datetime_utc '2024-10-19 15:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5htf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5HTF # _exptl.entry_id 5HTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HTF _cell.length_a 65.31 _cell.length_b 84.03 _cell.length_c 114.77 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 5HTF _atom_sites.fract_transf_matrix[1][1] 0.015312 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011901 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 401 1 MPD MPD . D 2 MPD A 1 402 3 MPD MPD . E 3 HOH A 1 501 237 HOH HOH . E 3 HOH A 2 502 273 HOH HOH . E 3 HOH A 3 503 234 HOH HOH . E 3 HOH A 4 504 216 HOH HOH . E 3 HOH A 5 505 78 HOH HOH . E 3 HOH A 6 506 207 HOH HOH . E 3 HOH A 7 507 97 HOH HOH . E 3 HOH A 8 508 70 HOH HOH . E 3 HOH A 9 509 277 HOH HOH . E 3 HOH A 10 510 193 HOH HOH . E 3 HOH A 11 511 59 HOH HOH . E 3 HOH A 12 512 136 HOH HOH . E 3 HOH A 13 513 82 HOH HOH . E 3 HOH A 14 514 44 HOH HOH . E 3 HOH A 15 515 17 HOH HOH . E 3 HOH A 16 516 47 HOH HOH . E 3 HOH A 17 517 53 HOH HOH . E 3 HOH A 18 518 64 HOH HOH . E 3 HOH A 19 519 89 HOH HOH . E 3 HOH A 20 520 215 HOH HOH . E 3 HOH A 21 521 105 HOH HOH . E 3 HOH A 22 522 30 HOH HOH . E 3 HOH A 23 523 60 HOH HOH . E 3 HOH A 24 524 1 HOH HOH . E 3 HOH A 25 525 259 HOH HOH . E 3 HOH A 26 526 22 HOH HOH . E 3 HOH A 27 527 117 HOH HOH . E 3 HOH A 28 528 153 HOH HOH . E 3 HOH A 29 529 31 HOH HOH . E 3 HOH A 30 530 220 HOH HOH . E 3 HOH A 31 531 228 HOH HOH . E 3 HOH A 32 532 94 HOH HOH . E 3 HOH A 33 533 101 HOH HOH . E 3 HOH A 34 534 147 HOH HOH . E 3 HOH A 35 535 21 HOH HOH . E 3 HOH A 36 536 233 HOH HOH . E 3 HOH A 37 537 141 HOH HOH . E 3 HOH A 38 538 9 HOH HOH . E 3 HOH A 39 539 48 HOH HOH . E 3 HOH A 40 540 106 HOH HOH . E 3 HOH A 41 541 87 HOH HOH . E 3 HOH A 42 542 151 HOH HOH . E 3 HOH A 43 543 49 HOH HOH . E 3 HOH A 44 544 34 HOH HOH . E 3 HOH A 45 545 140 HOH HOH . E 3 HOH A 46 546 100 HOH HOH . E 3 HOH A 47 547 52 HOH HOH . E 3 HOH A 48 548 121 HOH HOH . E 3 HOH A 49 549 224 HOH HOH . E 3 HOH A 50 550 40 HOH HOH . E 3 HOH A 51 551 5 HOH HOH . E 3 HOH A 52 552 3 HOH HOH . E 3 HOH A 53 553 74 HOH HOH . E 3 HOH A 54 554 65 HOH HOH . E 3 HOH A 55 555 50 HOH HOH . E 3 HOH A 56 556 154 HOH HOH . E 3 HOH A 57 557 84 HOH HOH . E 3 HOH A 58 558 56 HOH HOH . E 3 HOH A 59 559 206 HOH HOH . E 3 HOH A 60 560 88 HOH HOH . E 3 HOH A 61 561 8 HOH HOH . E 3 HOH A 62 562 203 HOH HOH . E 3 HOH A 63 563 68 HOH HOH . E 3 HOH A 64 564 37 HOH HOH . E 3 HOH A 65 565 211 HOH HOH . E 3 HOH A 66 566 28 HOH HOH . E 3 HOH A 67 567 260 HOH HOH . E 3 HOH A 68 568 134 HOH HOH . E 3 HOH A 69 569 23 HOH HOH . E 3 HOH A 70 570 86 HOH HOH . E 3 HOH A 71 571 120 HOH HOH . E 3 HOH A 72 572 69 HOH HOH . E 3 HOH A 73 573 198 HOH HOH . E 3 HOH A 74 574 163 HOH HOH . E 3 HOH A 75 575 29 HOH HOH . E 3 HOH A 76 576 81 HOH HOH . E 3 HOH A 77 577 165 HOH HOH . E 3 HOH A 78 578 191 HOH HOH . E 3 HOH A 79 579 35 HOH HOH . E 3 HOH A 80 580 13 HOH HOH . E 3 HOH A 81 581 62 HOH HOH . E 3 HOH A 82 582 93 HOH HOH . E 3 HOH A 83 583 235 HOH HOH . E 3 HOH A 84 584 55 HOH HOH . E 3 HOH A 85 585 11 HOH HOH . E 3 HOH A 86 586 36 HOH HOH . E 3 HOH A 87 587 72 HOH HOH . E 3 HOH A 88 588 16 HOH HOH . E 3 HOH A 89 589 194 HOH HOH . E 3 HOH A 90 590 123 HOH HOH . E 3 HOH A 91 591 197 HOH HOH . E 3 HOH A 92 592 204 HOH HOH . E 3 HOH A 93 593 20 HOH HOH . E 3 HOH A 94 594 152 HOH HOH . E 3 HOH A 95 595 61 HOH HOH . E 3 HOH A 96 596 99 HOH HOH . E 3 HOH A 97 597 214 HOH HOH . E 3 HOH A 98 598 80 HOH HOH . E 3 HOH A 99 599 6 HOH HOH . E 3 HOH A 100 600 116 HOH HOH . E 3 HOH A 101 601 164 HOH HOH . E 3 HOH A 102 602 144 HOH HOH . E 3 HOH A 103 603 223 HOH HOH . E 3 HOH A 104 604 96 HOH HOH . E 3 HOH A 105 605 157 HOH HOH . E 3 HOH A 106 606 132 HOH HOH . E 3 HOH A 107 607 177 HOH HOH . E 3 HOH A 108 608 33 HOH HOH . E 3 HOH A 109 609 127 HOH HOH . E 3 HOH A 110 610 7 HOH HOH . E 3 HOH A 111 611 130 HOH HOH . E 3 HOH A 112 612 76 HOH HOH . E 3 HOH A 113 613 179 HOH HOH . E 3 HOH A 114 614 232 HOH HOH . E 3 HOH A 115 615 238 HOH HOH . E 3 HOH A 116 616 10 HOH HOH . E 3 HOH A 117 617 159 HOH HOH . E 3 HOH A 118 618 110 HOH HOH . E 3 HOH A 119 619 66 HOH HOH . E 3 HOH A 120 620 225 HOH HOH . E 3 HOH A 121 621 57 HOH HOH . E 3 HOH A 122 622 67 HOH HOH . E 3 HOH A 123 623 158 HOH HOH . E 3 HOH A 124 624 146 HOH HOH . E 3 HOH A 125 625 128 HOH HOH . E 3 HOH A 126 626 137 HOH HOH . E 3 HOH A 127 627 109 HOH HOH . E 3 HOH A 128 628 245 HOH HOH . E 3 HOH A 129 629 167 HOH HOH . E 3 HOH A 130 630 71 HOH HOH . E 3 HOH A 131 631 63 HOH HOH . E 3 HOH A 132 632 41 HOH HOH . E 3 HOH A 133 633 156 HOH HOH . E 3 HOH A 134 634 45 HOH HOH . E 3 HOH A 135 635 262 HOH HOH . E 3 HOH A 136 636 104 HOH HOH . E 3 HOH A 137 637 183 HOH HOH . E 3 HOH A 138 638 265 HOH HOH . E 3 HOH A 139 639 195 HOH HOH . E 3 HOH A 140 640 150 HOH HOH . E 3 HOH A 141 641 212 HOH HOH . E 3 HOH A 142 642 264 HOH HOH . E 3 HOH A 143 643 115 HOH HOH . E 3 HOH A 144 644 261 HOH HOH . E 3 HOH A 145 645 229 HOH HOH . E 3 HOH A 146 646 58 HOH HOH . E 3 HOH A 147 647 213 HOH HOH . E 3 HOH A 148 648 279 HOH HOH . E 3 HOH A 149 649 192 HOH HOH . E 3 HOH A 150 650 166 HOH HOH . E 3 HOH A 151 651 25 HOH HOH . E 3 HOH A 152 652 210 HOH HOH . E 3 HOH A 153 653 246 HOH HOH . E 3 HOH A 154 654 102 HOH HOH . E 3 HOH A 155 655 171 HOH HOH . E 3 HOH A 156 656 199 HOH HOH . E 3 HOH A 157 657 125 HOH HOH . E 3 HOH A 158 658 231 HOH HOH . E 3 HOH A 159 659 185 HOH HOH . E 3 HOH A 160 660 266 HOH HOH . E 3 HOH A 161 661 221 HOH HOH . E 3 HOH A 162 662 90 HOH HOH . E 3 HOH A 163 663 263 HOH HOH . E 3 HOH A 164 664 239 HOH HOH . E 3 HOH A 165 665 219 HOH HOH . E 3 HOH A 166 666 129 HOH HOH . E 3 HOH A 167 667 188 HOH HOH . E 3 HOH A 168 668 184 HOH HOH . E 3 HOH A 169 669 181 HOH HOH . E 3 HOH A 170 670 161 HOH HOH . E 3 HOH A 171 671 281 HOH HOH . E 3 HOH A 172 672 227 HOH HOH . E 3 HOH A 173 673 268 HOH HOH . E 3 HOH A 174 674 236 HOH HOH . E 3 HOH A 175 675 148 HOH HOH . E 3 HOH A 176 676 149 HOH HOH . E 3 HOH A 177 677 196 HOH HOH . E 3 HOH A 178 678 176 HOH HOH . E 3 HOH A 179 679 178 HOH HOH . E 3 HOH A 180 680 143 HOH HOH . E 3 HOH A 181 681 111 HOH HOH . E 3 HOH A 182 682 169 HOH HOH . E 3 HOH A 183 683 145 HOH HOH . E 3 HOH A 184 684 186 HOH HOH . E 3 HOH A 185 685 258 HOH HOH . E 3 HOH A 186 686 112 HOH HOH . E 3 HOH A 187 687 79 HOH HOH . E 3 HOH A 188 688 280 HOH HOH . E 3 HOH A 189 689 168 HOH HOH . E 3 HOH A 190 690 278 HOH HOH . E 3 HOH A 191 691 162 HOH HOH . E 3 HOH A 192 692 172 HOH HOH . E 3 HOH A 193 693 230 HOH HOH . E 3 HOH A 194 694 124 HOH HOH . E 3 HOH A 195 695 267 HOH HOH . E 3 HOH A 196 696 226 HOH HOH . E 3 HOH A 197 697 208 HOH HOH . E 3 HOH A 198 698 222 HOH HOH . F 3 HOH B 1 401 240 HOH HOH . F 3 HOH B 2 402 249 HOH HOH . F 3 HOH B 3 403 42 HOH HOH . F 3 HOH B 4 404 19 HOH HOH . F 3 HOH B 5 405 202 HOH HOH . F 3 HOH B 6 406 118 HOH HOH . F 3 HOH B 7 407 180 HOH HOH . F 3 HOH B 8 408 254 HOH HOH . F 3 HOH B 9 409 252 HOH HOH . F 3 HOH B 10 410 187 HOH HOH . F 3 HOH B 11 411 95 HOH HOH . F 3 HOH B 12 412 173 HOH HOH . F 3 HOH B 13 413 108 HOH HOH . F 3 HOH B 14 414 126 HOH HOH . F 3 HOH B 15 415 155 HOH HOH . F 3 HOH B 16 416 250 HOH HOH . F 3 HOH B 17 417 4 HOH HOH . F 3 HOH B 18 418 32 HOH HOH . F 3 HOH B 19 419 170 HOH HOH . F 3 HOH B 20 420 12 HOH HOH . F 3 HOH B 21 421 98 HOH HOH . F 3 HOH B 22 422 43 HOH HOH . F 3 HOH B 23 423 217 HOH HOH . F 3 HOH B 24 424 274 HOH HOH . F 3 HOH B 25 425 255 HOH HOH . F 3 HOH B 26 426 26 HOH HOH . F 3 HOH B 27 427 73 HOH HOH . F 3 HOH B 28 428 91 HOH HOH . F 3 HOH B 29 429 174 HOH HOH . F 3 HOH B 30 430 39 HOH HOH . F 3 HOH B 31 431 107 HOH HOH . F 3 HOH B 32 432 92 HOH HOH . F 3 HOH B 33 433 131 HOH HOH . F 3 HOH B 34 434 24 HOH HOH . F 3 HOH B 35 435 119 HOH HOH . F 3 HOH B 36 436 2 HOH HOH . F 3 HOH B 37 437 18 HOH HOH . F 3 HOH B 38 438 83 HOH HOH . F 3 HOH B 39 439 251 HOH HOH . F 3 HOH B 40 440 160 HOH HOH . F 3 HOH B 41 441 46 HOH HOH . F 3 HOH B 42 442 85 HOH HOH . F 3 HOH B 43 443 77 HOH HOH . F 3 HOH B 44 444 38 HOH HOH . F 3 HOH B 45 445 27 HOH HOH . F 3 HOH B 46 446 14 HOH HOH . F 3 HOH B 47 447 54 HOH HOH . F 3 HOH B 48 448 175 HOH HOH . F 3 HOH B 49 449 75 HOH HOH . F 3 HOH B 50 450 51 HOH HOH . F 3 HOH B 51 451 15 HOH HOH . F 3 HOH B 52 452 201 HOH HOH . F 3 HOH B 53 453 139 HOH HOH . F 3 HOH B 54 454 122 HOH HOH . F 3 HOH B 55 455 243 HOH HOH . F 3 HOH B 56 456 133 HOH HOH . F 3 HOH B 57 457 135 HOH HOH . F 3 HOH B 58 458 242 HOH HOH . F 3 HOH B 59 459 142 HOH HOH . F 3 HOH B 60 460 138 HOH HOH . F 3 HOH B 61 461 190 HOH HOH . F 3 HOH B 62 462 257 HOH HOH . F 3 HOH B 63 463 270 HOH HOH . F 3 HOH B 64 464 209 HOH HOH . F 3 HOH B 65 465 244 HOH HOH . F 3 HOH B 66 466 241 HOH HOH . F 3 HOH B 67 467 114 HOH HOH . F 3 HOH B 68 468 218 HOH HOH . F 3 HOH B 69 469 182 HOH HOH . F 3 HOH B 70 470 113 HOH HOH . F 3 HOH B 71 471 256 HOH HOH . F 3 HOH B 72 472 103 HOH HOH . F 3 HOH B 73 473 282 HOH HOH . F 3 HOH B 74 474 205 HOH HOH . F 3 HOH B 75 475 189 HOH HOH . F 3 HOH B 76 476 247 HOH HOH . F 3 HOH B 77 477 253 HOH HOH . F 3 HOH B 78 478 276 HOH HOH . F 3 HOH B 79 479 200 HOH HOH . F 3 HOH B 80 480 269 HOH HOH . F 3 HOH B 81 481 248 HOH HOH . F 3 HOH B 82 482 271 HOH HOH . F 3 HOH B 83 483 272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 4.748 -6.486 -28.877 1 90.31 ? C1 MPD 401 A 1 HETATM 2 C C2 MPD . . . C 2 5.748 -7.378 -28.132 1 93.37 ? C2 MPD 401 A 1 HETATM 3 O O2 MPD . . . C 2 5.303 -7.476 -26.758 1 97.46 ? O2 MPD 401 A 1 HETATM 4 C CM MPD . . . C 2 5.751 -8.787 -28.731 1 93.89 ? CM MPD 401 A 1 HETATM 5 C C3 MPD . . . C 2 7.194 -6.869 -28.148 1 97.74 ? C3 MPD 401 A 1 HETATM 6 C C4 MPD . . . C 2 7.37 -5.36 -27.988 1 89.85 ? C4 MPD 401 A 1 HETATM 7 O O4 MPD . . . C 2 8.402 -5.102 -27.06 1 101.04 ? O4 MPD 401 A 1 HETATM 8 C C5 MPD . . . C 2 7.719 -4.69 -29.315 1 71.81 ? C5 MPD 401 A 1 HETATM 9 H H11 MPD . . . C 2 5.27 -5.625 -29.294 1 108.37 ? H11 MPD 401 A 1 HETATM 10 H H12 MPD . . . C 2 3.98 -6.144 -28.183 1 108.37 ? H12 MPD 401 A 1 HETATM 11 H H13 MPD . . . C 2 4.284 -7.054 -29.683 1 108.37 ? H13 MPD 401 A 1 HETATM 12 H HO2 MPD . . . C 2 6.026 -7.196 -26.159 1 116.95 ? HO2 MPD 401 A 1 HETATM 13 H HM1 MPD . . . C 2 6.768 -9.061 -29.009 1 112.67 ? HM1 MPD 401 A 1 HETATM 14 H HM2 MPD . . . C 2 5.114 -8.808 -29.615 1 112.67 ? HM2 MPD 401 A 1 HETATM 15 H HM3 MPD . . . C 2 5.373 -9.495 -27.993 1 112.67 ? HM3 MPD 401 A 1 HETATM 16 H H31 MPD . . . C 2 7.743 -7.367 -27.348 1 117.29 ? H31 MPD 401 A 1 HETATM 17 H H32 MPD . . . C 2 7.656 -7.172 -29.087 1 117.29 ? H32 MPD 401 A 1 HETATM 18 H H4 MPD . . . C 2 6.434 -4.938 -27.622 1 107.82 ? H4 MPD 401 A 1 HETATM 19 H HO4 MPD . . . C 2 8.167 -4.319 -26.52 1 121.24 ? HO4 MPD 401 A 1 HETATM 20 H H51 MPD . . . C 2 8.677 -4.178 -29.223 1 86.17 ? H51 MPD 401 A 1 HETATM 21 H H52 MPD . . . C 2 6.944 -3.968 -29.573 1 86.17 ? H52 MPD 401 A 1 HETATM 22 H H53 MPD . . . C 2 7.785 -5.446 -30.097 1 86.17 ? H53 MPD 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #