data_5HTP # _model_server_result.job_id 1Pq766fbysj4hkrFwWLDPQ _model_server_result.datetime_utc '2025-01-11 18:47:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5htp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5HTP # _exptl.entry_id 5HTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91 _cell.angle_gamma 90 _cell.entry_id 5HTP _cell.length_a 103.515 _cell.length_b 46.567 _cell.length_c 87.991 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5HTP _atom_sites.fract_transf_matrix[1][1] 0.00966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000169 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 501 502 ANP ANP . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 5 HOH HOH . C 3 HOH A 3 603 9 HOH HOH . C 3 HOH A 4 604 34 HOH HOH . C 3 HOH A 5 605 4 HOH HOH . C 3 HOH A 6 606 21 HOH HOH . C 3 HOH A 7 607 28 HOH HOH . C 3 HOH A 8 608 109 HOH HOH . C 3 HOH A 9 609 140 HOH HOH . C 3 HOH A 10 610 146 HOH HOH . C 3 HOH A 11 611 25 HOH HOH . C 3 HOH A 12 612 125 HOH HOH . C 3 HOH A 13 613 24 HOH HOH . C 3 HOH A 14 614 63 HOH HOH . C 3 HOH A 15 615 52 HOH HOH . C 3 HOH A 16 616 2 HOH HOH . C 3 HOH A 17 617 117 HOH HOH . C 3 HOH A 18 618 116 HOH HOH . C 3 HOH A 19 619 130 HOH HOH . C 3 HOH A 20 620 72 HOH HOH . C 3 HOH A 21 621 126 HOH HOH . C 3 HOH A 22 622 94 HOH HOH . C 3 HOH A 23 623 143 HOH HOH . C 3 HOH A 24 624 43 HOH HOH . C 3 HOH A 25 625 110 HOH HOH . C 3 HOH A 26 626 37 HOH HOH . C 3 HOH A 27 627 35 HOH HOH . C 3 HOH A 28 628 27 HOH HOH . C 3 HOH A 29 629 135 HOH HOH . C 3 HOH A 30 630 53 HOH HOH . C 3 HOH A 31 631 60 HOH HOH . C 3 HOH A 32 632 10 HOH HOH . C 3 HOH A 33 633 14 HOH HOH . C 3 HOH A 34 634 65 HOH HOH . C 3 HOH A 35 635 6 HOH HOH . C 3 HOH A 36 636 22 HOH HOH . C 3 HOH A 37 637 164 HOH HOH . C 3 HOH A 38 638 33 HOH HOH . C 3 HOH A 39 639 103 HOH HOH . C 3 HOH A 40 640 41 HOH HOH . C 3 HOH A 41 641 124 HOH HOH . C 3 HOH A 42 642 57 HOH HOH . C 3 HOH A 43 643 23 HOH HOH . C 3 HOH A 44 644 144 HOH HOH . C 3 HOH A 45 645 15 HOH HOH . C 3 HOH A 46 646 18 HOH HOH . C 3 HOH A 47 647 68 HOH HOH . C 3 HOH A 48 648 19 HOH HOH . C 3 HOH A 49 649 40 HOH HOH . C 3 HOH A 50 650 62 HOH HOH . C 3 HOH A 51 651 38 HOH HOH . C 3 HOH A 52 652 31 HOH HOH . C 3 HOH A 53 653 71 HOH HOH . C 3 HOH A 54 654 106 HOH HOH . C 3 HOH A 55 655 42 HOH HOH . C 3 HOH A 56 656 87 HOH HOH . C 3 HOH A 57 657 26 HOH HOH . C 3 HOH A 58 658 134 HOH HOH . C 3 HOH A 59 659 92 HOH HOH . C 3 HOH A 60 660 48 HOH HOH . C 3 HOH A 61 661 7 HOH HOH . C 3 HOH A 62 662 44 HOH HOH . C 3 HOH A 63 663 17 HOH HOH . C 3 HOH A 64 664 113 HOH HOH . C 3 HOH A 65 665 157 HOH HOH . C 3 HOH A 66 666 12 HOH HOH . C 3 HOH A 67 667 75 HOH HOH . C 3 HOH A 68 668 20 HOH HOH . C 3 HOH A 69 669 30 HOH HOH . C 3 HOH A 70 670 13 HOH HOH . C 3 HOH A 71 671 46 HOH HOH . C 3 HOH A 72 672 16 HOH HOH . C 3 HOH A 73 673 3 HOH HOH . C 3 HOH A 74 674 74 HOH HOH . C 3 HOH A 75 675 132 HOH HOH . C 3 HOH A 76 676 39 HOH HOH . C 3 HOH A 77 677 64 HOH HOH . C 3 HOH A 78 678 139 HOH HOH . C 3 HOH A 79 679 107 HOH HOH . C 3 HOH A 80 680 50 HOH HOH . C 3 HOH A 81 681 45 HOH HOH . C 3 HOH A 82 682 101 HOH HOH . C 3 HOH A 83 683 80 HOH HOH . C 3 HOH A 84 684 118 HOH HOH . C 3 HOH A 85 685 58 HOH HOH . C 3 HOH A 86 686 59 HOH HOH . C 3 HOH A 87 687 47 HOH HOH . C 3 HOH A 88 688 122 HOH HOH . C 3 HOH A 89 689 8 HOH HOH . C 3 HOH A 90 690 54 HOH HOH . C 3 HOH A 91 691 70 HOH HOH . C 3 HOH A 92 692 133 HOH HOH . C 3 HOH A 93 693 73 HOH HOH . C 3 HOH A 94 694 67 HOH HOH . C 3 HOH A 95 695 131 HOH HOH . C 3 HOH A 96 696 97 HOH HOH . C 3 HOH A 97 697 11 HOH HOH . C 3 HOH A 98 698 79 HOH HOH . C 3 HOH A 99 699 32 HOH HOH . C 3 HOH A 100 700 123 HOH HOH . C 3 HOH A 101 701 56 HOH HOH . C 3 HOH A 102 702 163 HOH HOH . C 3 HOH A 103 703 66 HOH HOH . C 3 HOH A 104 704 141 HOH HOH . C 3 HOH A 105 705 81 HOH HOH . C 3 HOH A 106 706 88 HOH HOH . C 3 HOH A 107 707 127 HOH HOH . C 3 HOH A 108 708 51 HOH HOH . C 3 HOH A 109 709 99 HOH HOH . C 3 HOH A 110 710 90 HOH HOH . C 3 HOH A 111 711 150 HOH HOH . C 3 HOH A 112 712 168 HOH HOH . C 3 HOH A 113 713 161 HOH HOH . C 3 HOH A 114 714 29 HOH HOH . C 3 HOH A 115 715 152 HOH HOH . C 3 HOH A 116 716 171 HOH HOH . C 3 HOH A 117 717 49 HOH HOH . C 3 HOH A 118 718 82 HOH HOH . C 3 HOH A 119 719 108 HOH HOH . C 3 HOH A 120 720 36 HOH HOH . C 3 HOH A 121 721 93 HOH HOH . C 3 HOH A 122 722 85 HOH HOH . C 3 HOH A 123 723 100 HOH HOH . C 3 HOH A 124 724 98 HOH HOH . C 3 HOH A 125 725 102 HOH HOH . C 3 HOH A 126 726 145 HOH HOH . C 3 HOH A 127 727 77 HOH HOH . C 3 HOH A 128 728 147 HOH HOH . C 3 HOH A 129 729 165 HOH HOH . C 3 HOH A 130 730 61 HOH HOH . C 3 HOH A 131 731 121 HOH HOH . C 3 HOH A 132 732 89 HOH HOH . C 3 HOH A 133 733 119 HOH HOH . C 3 HOH A 134 734 151 HOH HOH . C 3 HOH A 135 735 149 HOH HOH . C 3 HOH A 136 736 86 HOH HOH . C 3 HOH A 137 737 76 HOH HOH . C 3 HOH A 138 738 160 HOH HOH . C 3 HOH A 139 739 84 HOH HOH . C 3 HOH A 140 740 129 HOH HOH . C 3 HOH A 141 741 169 HOH HOH . C 3 HOH A 142 742 128 HOH HOH . C 3 HOH A 143 743 91 HOH HOH . C 3 HOH A 144 744 69 HOH HOH . C 3 HOH A 145 745 155 HOH HOH . C 3 HOH A 146 746 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -16.693 -3.856 13.108 1 76 ? PG ANP 501 A 1 HETATM 2 O O1G ANP . . . B 2 -16.992 -2.6 12.224 1 70.99 ? O1G ANP 501 A 1 HETATM 3 O O2G ANP . . . B 2 -15.253 -3.861 13.477 1 74.71 ? O2G ANP 501 A 1 HETATM 4 O O3G ANP . . . B 2 -17.531 -3.804 14.425 1 73.39 ? O3G ANP 501 A 1 HETATM 5 P PB ANP . . . B 2 -16.855 -5.225 10.614 1 44.65 ? PB ANP 501 A 1 HETATM 6 O O1B ANP . . . B 2 -17.846 -6.222 9.945 1 46.56 ? O1B ANP 501 A 1 HETATM 7 O O2B ANP . . . B 2 -17.146 -3.87 10.083 1 42.55 ? O2B ANP 501 A 1 HETATM 8 N N3B ANP . . . B 2 -17.038 -5.289 12.278 1 51.67 ? N3B ANP 501 A 1 HETATM 9 P PA ANP . . . B 2 -14.187 -4.584 10.05 1 37.72 ? PA ANP 501 A 1 HETATM 10 O O1A ANP . . . B 2 -12.942 -5.441 10.344 1 49.31 ? O1A ANP 501 A 1 HETATM 11 O O2A ANP . . . B 2 -14.332 -3.412 10.933 1 42.61 ? O2A ANP 501 A 1 HETATM 12 O O3A ANP . . . B 2 -15.403 -5.614 10.168 1 48.72 ? O3A ANP 501 A 1 HETATM 13 O O5' ANP . . . B 2 -14.205 -4.066 8.55 1 37.31 ? O5' ANP 501 A 1 HETATM 14 C C5' ANP . . . B 2 -14.243 -5.04 7.477 1 36.98 ? C5' ANP 501 A 1 HETATM 15 C C4' ANP . . . B 2 -14.084 -4.342 6.159 1 35.31 ? C4' ANP 501 A 1 HETATM 16 O O4' ANP . . . B 2 -12.746 -3.797 6.081 1 31.7 ? O4' ANP 501 A 1 HETATM 17 C C3' ANP . . . B 2 -14.259 -5.224 4.922 1 35.58 ? C3' ANP 501 A 1 HETATM 18 O O3' ANP . . . B 2 -15.468 -5.016 4.189 1 34.25 ? O3' ANP 501 A 1 HETATM 19 C C2' ANP . . . B 2 -13.029 -4.891 4.051 1 34.41 ? C2' ANP 501 A 1 HETATM 20 O O2' ANP . . . B 2 -13.368 -4.66 2.691 1 31.46 ? O2' ANP 501 A 1 HETATM 21 C C1' ANP . . . B 2 -12.44 -3.646 4.719 1 35.45 ? C1' ANP 501 A 1 HETATM 22 N N9 ANP . . . B 2 -10.986 -3.56 4.578 1 35.52 ? N9 ANP 501 A 1 HETATM 23 C C8 ANP . . . B 2 -10.069 -4.535 4.882 1 32.06 ? C8 ANP 501 A 1 HETATM 24 N N7 ANP . . . B 2 -8.822 -4.206 4.635 1 34.62 ? N7 ANP 501 A 1 HETATM 25 C C5 ANP . . . B 2 -8.921 -2.92 4.099 1 30.69 ? C5 ANP 501 A 1 HETATM 26 C C6 ANP . . . B 2 -7.945 -2.003 3.628 1 28.2 ? C6 ANP 501 A 1 HETATM 27 N N6 ANP . . . B 2 -6.64 -2.229 3.609 1 29.16 ? N6 ANP 501 A 1 HETATM 28 N N1 ANP . . . B 2 -8.388 -0.823 3.166 1 28.06 ? N1 ANP 501 A 1 HETATM 29 C C2 ANP . . . B 2 -9.704 -0.577 3.181 1 29.27 ? C2 ANP 501 A 1 HETATM 30 N N3 ANP . . . B 2 -10.72 -1.345 3.598 1 30.35 ? N3 ANP 501 A 1 HETATM 31 C C4 ANP . . . B 2 -10.252 -2.514 4.051 1 31.42 ? C4 ANP 501 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #