data_5HU6 # _model_server_result.job_id ZLw1dc9C6QUrYN9zYKcTHw _model_server_result.datetime_utc '2024-12-02 11:54:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 5HU6 # _exptl.entry_id 5HU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.97 _cell.angle_gamma 90 _cell.entry_id 5HU6 _cell.length_a 222.29 _cell.length_b 56.56 _cell.length_c 66.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 2 C CYS 149 1_555 C SG CYS 119 C CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? disulf ? disulf2 C SG CYS 162 C CYS 309 1_555 C SG CYS 193 C CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? disulf ? disulf3 C SG CYS 204 C CYS 351 1_555 C SG CYS 234 C CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? disulf ? disulf4 D SG CYS 12 D CYS 49 1_555 D SG CYS 160 D CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? covale ? covale1 C ND2 ASN 37 C ASN 184 1_555 I C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 C ND2 ASN 94 C ASN 241 1_555 J C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A NE2 HIS 87 A HIS 88 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 E FE HEM . A HEM 201 1_555 F O1 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc3 B NE2 HIS 91 B HIS 93 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc4 G FE HEM . B HEM 201 1_555 H O1 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 5HU6 _atom_sites.fract_transf_matrix[1][1] 0.004499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HEM A 1 201 143 HEM HEM . F 6 OXY A 1 202 144 OXY O2 . G 5 HEM B 1 201 144 HEM HEM . H 6 OXY B 1 202 145 OXY O2 . I 7 NAG C 1 501 407 NAG NAG . J 7 NAG C 1 502 408 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 5 58.073 38.118 3.342 1 66.09 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . E 5 55.649 39.233 7.358 1 55.02 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . E 5 53.166 35.144 7.014 1 51.28 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . E 5 55.877 33.887 3.263 1 59.05 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . E 5 57.574 38.761 4.443 1 67.23 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . E 5 58.183 39.93 4.981 1 69.04 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . E 5 57.519 40.232 6.132 1 65.55 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . E 5 56.474 39.281 6.256 1 59.74 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . E 5 57.769 41.44 7.024 1 65.64 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . E 5 59.395 40.67 4.471 1 71.6 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . E 5 59.131 41.743 3.427 1 75.14 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . E 5 60.502 42.131 2.895 1 81.7 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . E 5 61.148 41.31 2.188 1 82.8 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . E 5 61.025 43.247 3.179 1 83.7 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . E 5 54.758 38.193 7.611 1 55.62 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . E 5 53.842 38.197 8.719 1 54.98 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . E 5 53.128 37.024 8.636 1 53.51 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . E 5 53.647 36.358 7.428 1 52.14 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . E 5 53.712 39.316 9.739 1 54.83 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . E 5 52.06 36.443 9.496 1 54.06 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . E 5 51.798 36.799 10.756 1 52.61 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . E 5 53.636 34.49 5.898 1 51.56 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . E 5 53.399 33.118 5.7 1 48.84 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . E 5 54.206 32.723 4.632 1 50.52 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . E 5 54.906 33.903 4.226 1 54.99 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . E 5 52.376 32.29 6.454 1 45.77 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . E 5 54.274 31.41 3.941 1 49.76 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . E 5 54.063 30.241 4.537 1 49.74 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . E 5 56.665 34.98 2.958 1 63.48 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . E 5 57.667 34.911 1.892 1 66.47 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . E 5 58.292 36.102 1.904 1 69.63 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . E 5 57.663 36.861 3 1 65.03 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . E 5 57.907 33.752 0.962 1 67.04 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . E 5 59.374 36.575 0.95 1 77.4 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . E 5 60.77 36.165 1.427 1 85.19 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . E 5 61.811 37.158 0.963 1 95.17 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . E 5 62.093 37.244 -0.252 1 99.11 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . E 5 62.377 37.914 1.798 1 100.36 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . E 5 56.864 38.231 5.48 1 63.94 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . E 5 54.576 37.114 6.842 1 56.16 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . E 5 54.818 34.718 5.296 1 55.45 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . E 5 56.704 36.151 3.588 1 62.66 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . E 5 55.66 36.655 5.053 1 60.2 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 61 _model_server_stats.create_model_time_ms 106 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #