data_5HU6
#
_model_server_result.job_id            kK9oXfqcPAMDxSDakj1NOg 
_model_server_result.datetime_utc      '2024-12-02 11:53:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hu6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    5HU6 
#
_exptl.entry_id    5HU6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          7 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.97 
_cell.angle_gamma         90 
_cell.entry_id            5HU6 
_cell.length_a            222.29 
_cell.length_b            56.56 
_cell.length_c            66.1 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 2 C CYS 149 1_555 C SG CYS 119 C CYS 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
disulf ? disulf2 C SG CYS 162 C CYS 309 1_555 C SG CYS 193 C CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
disulf ? disulf3 C SG CYS 204 C CYS 351 1_555 C SG CYS 234 C CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
disulf ? disulf4 D SG CYS 12 D CYS 49 1_555 D SG CYS 160 D CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
covale ? covale1 C ND2 ASN 37 C ASN 184 1_555 I C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 C ND2 ASN 94 C ASN 241 1_555 J C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
metalc ? metalc1 A NE2 HIS 87 A HIS 88 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc2 E FE HEM . A HEM 201 1_555 F O1 OXY . A OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc3 B NE2 HIS 91 B HIS 93 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc4 G FE HEM . B HEM 201 1_555 H O1 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 317 n n 
C1 O1 NAG sing 318 n n 
C1 O5 NAG sing 319 n n 
C1 H1 NAG sing 320 n n 
C2 C3 NAG sing 321 n n 
C2 N2 NAG sing 322 n n 
C2 H2 NAG sing 323 n n 
C3 C4 NAG sing 324 n n 
C3 O3 NAG sing 325 n n 
C3 H3 NAG sing 326 n n 
C4 C5 NAG sing 327 n n 
C4 O4 NAG sing 328 n n 
C4 H4 NAG sing 329 n n 
C5 C6 NAG sing 330 n n 
C5 O5 NAG sing 331 n n 
C5 H5 NAG sing 332 n n 
C6 O6 NAG sing 333 n n 
C6 H61 NAG sing 334 n n 
C6 H62 NAG sing 335 n n 
C7 C8 NAG sing 336 n n 
C7 N2 NAG sing 337 n n 
C7 O7 NAG doub 338 n n 
C8 H81 NAG sing 339 n n 
C8 H82 NAG sing 340 n n 
C8 H83 NAG sing 341 n n 
N2 HN2 NAG sing 342 n n 
O1 HO1 NAG sing 343 n n 
O3 HO3 NAG sing 344 n n 
O4 HO4 NAG sing 345 n n 
O6 HO6 NAG sing 346 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5HU6 
_atom_sites.fract_transf_matrix[1][1]    0.004499 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000233 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01768 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 HEM A 1 201 143 HEM HEM . 
F 6 OXY A 1 202 144 OXY O2 . 
G 5 HEM B 1 201 144 HEM HEM . 
H 6 OXY B 1 202 145 OXY O2 . 
I 7 NAG C 1 501 407 NAG NAG . 
J 7 NAG C 1 502 408 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . I 7 43.997 22.013 -9.233 1 129.85 ? C1 NAG 501 C 1 
HETATM 2 C C2 NAG . . . I 7 43.565 20.547 -9.213 1 132.74 ? C2 NAG 501 C 1 
HETATM 3 C C3 NAG . . . I 7 43.944 19.882 -10.543 1 136.86 ? C3 NAG 501 C 1 
HETATM 4 C C4 NAG . . . I 7 45.102 20.599 -11.25 1 138.4 ? C4 NAG 501 C 1 
HETATM 5 C C5 NAG . . . I 7 44.855 22.097 -11.455 1 135.61 ? C5 NAG 501 C 1 
HETATM 6 C C6 NAG . . . I 7 44.384 22.448 -12.848 1 135.69 ? C6 NAG 501 C 1 
HETATM 7 C C7 NAG . . . I 7 43.631 18.95 -7.322 1 131.72 ? C7 NAG 501 C 1 
HETATM 8 C C8 NAG . . . I 7 44.473 18.403 -6.207 1 132.19 ? C8 NAG 501 C 1 
HETATM 9 N N2 NAG . . . I 7 44.22 19.874 -8.099 1 133.2 ? N2 NAG 501 C 1 
HETATM 10 O O3 NAG . . . I 7 42.814 19.78 -11.403 1 136.78 ? O3 NAG 501 C 1 
HETATM 11 O O4 NAG . . . I 7 46.343 20.387 -10.58 1 140.04 ? O4 NAG 501 C 1 
HETATM 12 O O5 NAG . . . I 7 43.863 22.59 -10.534 1 131.65 ? O5 NAG 501 C 1 
HETATM 13 O O6 NAG . . . I 7 44.41 23.853 -13.061 1 134.09 ? O6 NAG 501 C 1 
HETATM 14 O O7 NAG . . . I 7 42.476 18.574 -7.51 1 130.3 ? O7 NAG 501 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           281 
_model_server_stats.create_model_time_ms    99 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           14 
#