data_5HUC # _model_server_result.job_id i-fucFoOVaIEUDkqCZbdAA _model_server_result.datetime_utc '2024-11-24 12:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5huc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5HUC # _exptl.entry_id 5HUC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HUC _cell.length_a 109.844 _cell.length_b 109.844 _cell.length_c 279.304 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HUC _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 54.922 95.127694 0 3 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -93.101333 4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 54.922 95.127694 -93.101333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 97 A CYS 97 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A NE2 HIS 379 A HIS 379 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc3 A OE1 GLU 421 A GLU 421 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc4 A OE2 GLU 421 A GLU 421 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? metalc ? metalc5 A OD2 ASP 451 A ASP 451 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 258 n n C1 O2' PEP sing 259 n n C1 C2 PEP sing 260 n n O2' HO2 PEP sing 261 n n C2 C3 PEP doub 262 n n C2 O2 PEP sing 263 n n C3 H31 PEP sing 264 n n C3 H32 PEP sing 265 n n O2 P PEP sing 266 n n P O1P PEP doub 267 n n P O2P PEP sing 268 n n P O3P PEP sing 269 n n O2P HOP2 PEP sing 270 n n O3P HOP3 PEP sing 271 n n # _atom_sites.entry_id 5HUC _atom_sites.fract_transf_matrix[1][1] 0.009104 _atom_sites.fract_transf_matrix[1][2] 0.005256 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010512 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 1 MN MN . C 3 PEP A 1 502 1 PEP PEP . D 4 MPD A 1 503 1 MPD MPD . E 4 MPD A 1 504 2 MPD MPD . F 4 MPD A 1 505 3 MPD MPD . G 5 TRP A 1 506 1 TRP TRP . H 6 PO4 A 1 507 1 PO4 PO4 . I 6 PO4 A 1 508 2 PO4 PO4 . J 7 HOH A 1 601 2 HOH HOH . J 7 HOH A 2 602 8 HOH HOH . J 7 HOH A 3 603 13 HOH HOH . J 7 HOH A 4 604 4 HOH HOH . J 7 HOH A 5 605 7 HOH HOH . J 7 HOH A 6 606 12 HOH HOH . J 7 HOH A 7 607 3 HOH HOH . J 7 HOH A 8 608 1 HOH HOH . J 7 HOH A 9 609 10 HOH HOH . J 7 HOH A 10 610 19 HOH HOH . J 7 HOH A 11 611 9 HOH HOH . J 7 HOH A 12 612 14 HOH HOH . J 7 HOH A 13 613 20 HOH HOH . J 7 HOH A 14 614 6 HOH HOH . J 7 HOH A 15 615 16 HOH HOH . J 7 HOH A 16 616 15 HOH HOH . J 7 HOH A 17 617 11 HOH HOH . J 7 HOH A 18 618 17 HOH HOH . J 7 HOH A 19 619 5 HOH HOH . J 7 HOH A 20 620 18 HOH HOH . J 7 HOH A 21 621 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . C 3 6.517 36.395 -13.082 1 116.75 ? C1 PEP 502 A 1 HETATM 2 O O1 PEP . . . C 3 7.028 36.625 -14.2 1 118 ? O1 PEP 502 A 1 HETATM 3 O O2' PEP . . . C 3 7.023 35.567 -12.28 1 110.39 ? O2' PEP 502 A 1 HETATM 4 C C2 PEP . . . C 3 5.295 37.121 -12.725 1 113.19 ? C2 PEP 502 A 1 HETATM 5 C C3 PEP . . . C 3 5.32 38.439 -12.688 1 111.27 ? C3 PEP 502 A 1 HETATM 6 O O2 PEP . . . C 3 4.075 36.393 -12.402 1 108.58 ? O2 PEP 502 A 1 HETATM 7 P P PEP . . . C 3 2.693 36.523 -13.227 0.9 98.78 ? P PEP 502 A 1 HETATM 8 O O1P PEP . . . C 3 3.016 36.114 -14.637 1 97.05 ? O1P PEP 502 A 1 HETATM 9 O O2P PEP . . . C 3 1.837 35.512 -12.51 1 98.81 ? O2P PEP 502 A 1 HETATM 10 O O3P PEP . . . C 3 2.243 37.961 -13.084 1 87.79 ? O3P PEP 502 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #