data_5HUE # _model_server_result.job_id 8ffIzG-ubyTmiZhsNm33cA _model_server_result.datetime_utc '2024-11-28 06:59:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 5HUE # _exptl.entry_id 5HUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HUE _cell.length_a 109.189 _cell.length_b 109.189 _cell.length_c 279.897 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -109.189 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -109.189 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 97 A CYS 97 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A NE2 HIS 379 A HIS 379 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc3 A OE2 GLU 421 A GLU 421 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc4 A OD2 ASP 451 A ASP 451 1_555 B MN MN . A MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 368 n n N H TRP sing 369 n n N H2 TRP sing 370 n n CA C TRP sing 371 n n CA CB TRP sing 372 n n CA HA TRP sing 373 n n C O TRP doub 374 n n C OXT TRP sing 375 n n CB CG TRP sing 376 n n CB HB2 TRP sing 377 n n CB HB3 TRP sing 378 n n CG CD1 TRP doub 379 n y CG CD2 TRP sing 380 n y CD1 NE1 TRP sing 381 n y CD1 HD1 TRP sing 382 n n CD2 CE2 TRP doub 383 n y CD2 CE3 TRP sing 384 n y NE1 CE2 TRP sing 385 n y NE1 HE1 TRP sing 386 n n CE2 CZ2 TRP sing 387 n y CE3 CZ3 TRP doub 388 n y CE3 HE3 TRP sing 389 n n CZ2 CH2 TRP doub 390 n y CZ2 HZ2 TRP sing 391 n n CZ3 CH2 TRP sing 392 n y CZ3 HZ3 TRP sing 393 n n CH2 HH2 TRP sing 394 n n OXT HXT TRP sing 395 n n # _atom_sites.entry_id 5HUE _atom_sites.fract_transf_matrix[1][1] 0.009158 _atom_sites.fract_transf_matrix[1][2] 0.005288 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010575 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 501 1 MN MN . C 3 PEP A 1 502 1 PEP PEP . D 4 TRP A 1 503 1 TRP TRP . E 5 MPD A 1 504 1 MPD MPD . F 5 MPD A 1 505 2 MPD MPD . G 5 MPD A 1 506 3 MPD MPD . H 5 MPD A 1 507 4 MPD MPD . I 5 MPD A 1 508 5 MPD MPD . J 6 PGE A 1 509 11 PGE PGE . K 7 PO4 A 1 510 1 PO4 PO4 . L 7 PO4 A 1 511 2 PO4 PO4 . M 8 TRS A 1 512 1 TRS TRS . N 9 HOH A 1 601 4 HOH HOH . N 9 HOH A 2 602 9 HOH HOH . N 9 HOH A 3 603 16 HOH HOH . N 9 HOH A 4 604 12 HOH HOH . N 9 HOH A 5 605 15 HOH HOH . N 9 HOH A 6 606 5 HOH HOH . N 9 HOH A 7 607 3 HOH HOH . N 9 HOH A 8 608 2 HOH HOH . N 9 HOH A 9 609 1 HOH HOH . N 9 HOH A 10 610 21 HOH HOH . N 9 HOH A 11 611 14 HOH HOH . N 9 HOH A 12 612 8 HOH HOH . N 9 HOH A 13 613 18 HOH HOH . N 9 HOH A 14 614 10 HOH HOH . N 9 HOH A 15 615 7 HOH HOH . N 9 HOH A 16 616 11 HOH HOH . N 9 HOH A 17 617 20 HOH HOH . N 9 HOH A 18 618 19 HOH HOH . N 9 HOH A 19 619 13 HOH HOH . N 9 HOH A 20 620 6 HOH HOH . N 9 HOH A 21 621 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . D 4 -46.265 -2.178 9.988 1 91.26 ? N TRP 503 A 1 HETATM 2 C CA TRP . . . D 4 -44.973 -2.764 9.523 1 91.99 ? CA TRP 503 A 1 HETATM 3 C C TRP . . . D 4 -44.365 -3.641 10.607 1 95.56 ? C TRP 503 A 1 HETATM 4 O O TRP . . . D 4 -43.382 -4.343 10.366 1 97.05 ? O TRP 503 A 1 HETATM 5 C CB TRP . . . D 4 -43.977 -1.665 9.125 1 92.39 ? CB TRP 503 A 1 HETATM 6 C CG TRP . . . D 4 -43.522 -0.82 10.262 1 90.73 ? CG TRP 503 A 1 HETATM 7 C CD1 TRP . . . D 4 -44.134 0.289 10.757 1 93.47 ? CD1 TRP 503 A 1 HETATM 8 C CD2 TRP . . . D 4 -42.352 -1.02 11.051 1 91.7 ? CD2 TRP 503 A 1 HETATM 9 N NE1 TRP . . . D 4 -43.421 0.793 11.815 1 93.78 ? NE1 TRP 503 A 1 HETATM 10 C CE2 TRP . . . D 4 -42.319 0.006 12.016 1 91.18 ? CE2 TRP 503 A 1 HETATM 11 C CE3 TRP . . . D 4 -41.328 -1.971 11.04 1 95.09 ? CE3 TRP 503 A 1 HETATM 12 C CZ2 TRP . . . D 4 -41.298 0.113 12.955 1 93.26 ? CZ2 TRP 503 A 1 HETATM 13 C CZ3 TRP . . . D 4 -40.311 -1.865 11.976 1 96.74 ? CZ3 TRP 503 A 1 HETATM 14 C CH2 TRP . . . D 4 -40.305 -0.83 12.922 1 95.8 ? CH2 TRP 503 A 1 HETATM 15 O OXT TRP . . . D 4 -44.835 -3.649 11.748 1 101.46 ? OXT TRP 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #