data_5HUF # _model_server_result.job_id U17kZaFqRrVA03RSfrGNmw _model_server_result.datetime_utc '2024-11-14 20:32:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5huf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":505}' # _entry.id 5HUF # _exptl.entry_id 5HUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HUF _cell.length_a 125.328 _cell.length_b 252.385 _cell.length_c 70.623 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG A 601 NAG 3 n G NAG 2 G 2 NAG A 602 NAG 3 n G MAN 3 G 3 MAN A 603 MAN 4 n H NAG 1 H 1 NAG B 201 NAG 4 n H NAG 2 H 2 NAG B 202 NAG 3 n I NAG 1 I 1 NAG C 601 NAG 3 n I NAG 2 I 2 NAG C 602 NAG 3 n I MAN 3 I 3 MAN C 603 MAN 4 n J NAG 1 J 1 NAG D 201 NAG 4 n J NAG 2 J 2 NAG D 202 NAG 3 n K NAG 1 K 1 NAG E 601 NAG 3 n K NAG 2 K 2 NAG E 602 NAG 3 n K MAN 3 K 3 MAN E 603 MAN 4 n L NAG 1 L 1 NAG F 201 NAG 4 n L NAG 2 L 2 NAG F 202 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 4 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf2 A SG CYS 47 A CYS 42 1_555 A SG CYS 279 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 60 A CYS 55 1_555 A SG CYS 72 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 95 A CYS 90 1_555 A SG CYS 140 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf5 A SG CYS 283 A CYS 278 1_555 A SG CYS 307 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? disulf ? disulf7 C SG CYS 9 C CYS 4 1_555 D SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf8 C SG CYS 47 C CYS 42 1_555 C SG CYS 279 C CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 C SG CYS 60 C CYS 55 1_555 C SG CYS 72 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf10 C SG CYS 95 C CYS 90 1_555 C SG CYS 140 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf11 C SG CYS 283 C CYS 278 1_555 C SG CYS 307 C CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf13 E SG CYS 9 E CYS 4 1_555 F SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 E SG CYS 47 E CYS 42 1_555 E SG CYS 279 E CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf15 E SG CYS 60 E CYS 55 1_555 E SG CYS 72 E CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf16 E SG CYS 95 E CYS 90 1_555 E SG CYS 140 E CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf17 E SG CYS 283 E CYS 278 1_555 E SG CYS 307 E CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf18 F SG CYS 144 F CYS 144 1_555 F SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A OD1 ASN 28 A ASN 23 1_555 M C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale2 A ND2 ASN 170 A ASN 165 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale3 A ND2 ASN 291 A ASN 286 1_555 N C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 B ND2 ASN 154 B ASN 154 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale5 C OD1 ASN 28 C ASN 23 1_555 O C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale6 C ND2 ASN 170 C ASN 165 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale7 C ND2 ASN 291 C ASN 286 1_555 P C1 NAG . C NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale8 D ND2 ASN 154 D ASN 154 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale9 E OD1 ASN 28 E ASN 23 1_555 Q C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 E ND2 ASN 170 E ASN 165 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale11 E ND2 ASN 291 E ASN 286 1_555 R C1 NAG . E NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 F ND2 ASN 154 F ASN 154 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale14 G O4 NAG . G NAG 2 1_555 G C1 MAN . G MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale15 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale16 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale17 I O4 NAG . I NAG 2 1_555 I C1 MAN . I MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale18 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale19 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale20 K O4 NAG . K NAG 2 1_555 K C1 MAN . K MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale21 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5HUF _atom_sites.fract_transf_matrix[1][1] 0.007979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 5 NAG A 1 501 501 NAG NAG . N 5 NAG A 1 505 701 NAG NAG . O 5 NAG C 1 501 501 NAG NAG . P 5 NAG C 1 505 701 NAG NAG . Q 5 NAG E 1 501 501 NAG NAG . R 5 NAG E 1 505 701 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 5 54.387 41.123 5.662 1 119.08 ? C1 NAG 505 A 1 HETATM 2 C C2 NAG . . . N 5 55.551 42.002 5.177 1 123.82 ? C2 NAG 505 A 1 HETATM 3 C C3 NAG . . . N 5 55.801 41.719 3.688 1 131.21 ? C3 NAG 505 A 1 HETATM 4 C C4 NAG . . . N 5 55.704 40.225 3.309 1 132.64 ? C4 NAG 505 A 1 HETATM 5 C C5 NAG . . . N 5 54.542 39.495 3.984 1 128.03 ? C5 NAG 505 A 1 HETATM 6 C C6 NAG . . . N 5 54.579 38.009 3.606 1 124.38 ? C6 NAG 505 A 1 HETATM 7 C C7 NAG . . . N 5 56.118 44.346 5.919 1 107.8 ? C7 NAG 505 A 1 HETATM 8 C C8 NAG . . . N 5 55.611 45.753 6.146 1 98.96 ? C8 NAG 505 A 1 HETATM 9 N N2 NAG . . . N 5 55.25 43.423 5.448 1 117.85 ? N2 NAG 505 A 1 HETATM 10 O O3 NAG . . . N 5 57.074 42.224 3.333 1 127.4 ? O3 NAG 505 A 1 HETATM 11 O O4 NAG . . . N 5 55.57 40.058 1.909 1 138.69 ? O4 NAG 505 A 1 HETATM 12 O O5 NAG . . . N 5 54.619 39.74 5.384 1 119.78 ? O5 NAG 505 A 1 HETATM 13 O O6 NAG . . . N 5 53.695 37.261 4.403 1 126.98 ? O6 NAG 505 A 1 HETATM 14 O O7 NAG . . . N 5 57.3 44.105 6.165 1 104.42 ? O7 NAG 505 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #