data_5HUG # _model_server_result.job_id fv5k_orl7sWXLCI1_oU8RA _model_server_result.datetime_utc '2024-11-14 20:33:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":502}' # _entry.id 5HUG # _exptl.entry_id 5HUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HUG _cell.length_a 91.644 _cell.length_b 91.644 _cell.length_c 108.965 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 91.644 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 45.822 -45.822 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 45.822 45.822 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 600 NAG 2 n B NAG 2 B 2 NAG A 601 NAG 2 n B FUC 3 B 3 FUC A 603 FUC 3 n C NAG 1 C 1 NAG A 604 NAG 3 n C FUC 2 C 2 FUC A 605 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 92 1_555 A SG CYS 345 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf2 A SG CYS 52 A CYS 124 1_555 A SG CYS 57 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? disulf ? disulf3 A SG CYS 112 A CYS 183 1_555 A SG CYS 159 A CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf4 A SG CYS 161 A CYS 232 1_555 A SG CYS 166 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? disulf ? disulf5 A SG CYS 207 A CYS 278 1_555 A SG CYS 220 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? disulf ? disulf6 A SG CYS 209 A CYS 280 1_555 A SG CYS 218 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf7 A SG CYS 246 A CYS 318 1_555 A SG CYS 263 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf8 A SG CYS 349 A CYS 421 1_555 A SG CYS 374 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? covale ? covale1 A ND2 ASN 16 A ASN 88 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale2 A ND2 ASN 74 A ASN 146 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale3 A ND2 ASN 163 A ASN 234 1_555 F C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A O ASP 222 A ASP 293 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A O GLY 226 A GLY 297 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 A OD2 ASP 252 A ASP 324 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A O GLY 270 A GLY 345 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc5 A O TYR 272 A TYR 347 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc6 A OD1 ASP 304 A ASP 379 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 A OD2 ASP 304 A ASP 379 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc8 A OD1 ASN 306 A ASN 381 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc9 A OD1 ASP 312 A ASP 387 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc10 A O SER 314 A SER 389 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc11 D CA CA . A CA 501 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc12 D CA CA . A CA 501 1_555 G O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc13 E CA CA . A CA 502 1_555 G O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HUG _atom_sites.fract_transf_matrix[1][1] 0.010912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 501 501 CA CA . E 4 CA A 1 502 502 CA CA . F 5 NAG A 1 508 606 NAG NAG . G 6 HOH A 1 601 50 HOH HOH . G 6 HOH A 2 602 134 HOH HOH . G 6 HOH A 3 603 27 HOH HOH . G 6 HOH A 4 604 35 HOH HOH . G 6 HOH A 5 605 137 HOH HOH . G 6 HOH A 6 606 64 HOH HOH . G 6 HOH A 7 607 168 HOH HOH . G 6 HOH A 8 608 42 HOH HOH . G 6 HOH A 9 609 57 HOH HOH . G 6 HOH A 10 610 86 HOH HOH . G 6 HOH A 11 611 169 HOH HOH . G 6 HOH A 12 612 25 HOH HOH . G 6 HOH A 13 613 12 HOH HOH . G 6 HOH A 14 614 85 HOH HOH . G 6 HOH A 15 615 90 HOH HOH . G 6 HOH A 16 616 81 HOH HOH . G 6 HOH A 17 617 135 HOH HOH . G 6 HOH A 18 618 88 HOH HOH . G 6 HOH A 19 619 142 HOH HOH . G 6 HOH A 20 620 95 HOH HOH . G 6 HOH A 21 621 26 HOH HOH . G 6 HOH A 22 622 7 HOH HOH . G 6 HOH A 23 623 123 HOH HOH . G 6 HOH A 24 624 70 HOH HOH . G 6 HOH A 25 625 23 HOH HOH . G 6 HOH A 26 626 94 HOH HOH . G 6 HOH A 27 627 122 HOH HOH . G 6 HOH A 28 628 62 HOH HOH . G 6 HOH A 29 629 6 HOH HOH . G 6 HOH A 30 630 99 HOH HOH . G 6 HOH A 31 631 141 HOH HOH . G 6 HOH A 32 632 121 HOH HOH . G 6 HOH A 33 633 59 HOH HOH . G 6 HOH A 34 634 21 HOH HOH . G 6 HOH A 35 635 39 HOH HOH . G 6 HOH A 36 636 129 HOH HOH . G 6 HOH A 37 637 116 HOH HOH . G 6 HOH A 38 638 125 HOH HOH . G 6 HOH A 39 639 165 HOH HOH . G 6 HOH A 40 640 117 HOH HOH . G 6 HOH A 41 641 37 HOH HOH . G 6 HOH A 42 642 92 HOH HOH . G 6 HOH A 43 643 102 HOH HOH . G 6 HOH A 44 644 10 HOH HOH . G 6 HOH A 45 645 65 HOH HOH . G 6 HOH A 46 646 132 HOH HOH . G 6 HOH A 47 647 36 HOH HOH . G 6 HOH A 48 648 167 HOH HOH . G 6 HOH A 49 649 76 HOH HOH . G 6 HOH A 50 650 112 HOH HOH . G 6 HOH A 51 651 8 HOH HOH . G 6 HOH A 52 652 19 HOH HOH . G 6 HOH A 53 653 164 HOH HOH . G 6 HOH A 54 654 161 HOH HOH . G 6 HOH A 55 655 127 HOH HOH . G 6 HOH A 56 656 54 HOH HOH . G 6 HOH A 57 657 128 HOH HOH . G 6 HOH A 58 658 163 HOH HOH . G 6 HOH A 59 659 71 HOH HOH . G 6 HOH A 60 660 40 HOH HOH . G 6 HOH A 61 661 52 HOH HOH . G 6 HOH A 62 662 74 HOH HOH . G 6 HOH A 63 663 18 HOH HOH . G 6 HOH A 64 664 98 HOH HOH . G 6 HOH A 65 665 96 HOH HOH . G 6 HOH A 66 666 45 HOH HOH . G 6 HOH A 67 667 119 HOH HOH . G 6 HOH A 68 668 2 HOH HOH . G 6 HOH A 69 669 87 HOH HOH . G 6 HOH A 70 670 17 HOH HOH . G 6 HOH A 71 671 68 HOH HOH . G 6 HOH A 72 672 61 HOH HOH . G 6 HOH A 73 673 150 HOH HOH . G 6 HOH A 74 674 24 HOH HOH . G 6 HOH A 75 675 151 HOH HOH . G 6 HOH A 76 676 34 HOH HOH . G 6 HOH A 77 677 13 HOH HOH . G 6 HOH A 78 678 4 HOH HOH . G 6 HOH A 79 679 15 HOH HOH . G 6 HOH A 80 680 91 HOH HOH . G 6 HOH A 81 681 109 HOH HOH . G 6 HOH A 82 682 16 HOH HOH . G 6 HOH A 83 683 108 HOH HOH . G 6 HOH A 84 684 111 HOH HOH . G 6 HOH A 85 685 105 HOH HOH . G 6 HOH A 86 686 72 HOH HOH . G 6 HOH A 87 687 29 HOH HOH . G 6 HOH A 88 688 1 HOH HOH . G 6 HOH A 89 689 33 HOH HOH . G 6 HOH A 90 690 51 HOH HOH . G 6 HOH A 91 691 120 HOH HOH . G 6 HOH A 92 692 14 HOH HOH . G 6 HOH A 93 693 114 HOH HOH . G 6 HOH A 94 694 162 HOH HOH . G 6 HOH A 95 695 101 HOH HOH . G 6 HOH A 96 696 48 HOH HOH . G 6 HOH A 97 697 53 HOH HOH . G 6 HOH A 98 698 118 HOH HOH . G 6 HOH A 99 699 89 HOH HOH . G 6 HOH A 100 700 9 HOH HOH . G 6 HOH A 101 701 107 HOH HOH . G 6 HOH A 102 702 83 HOH HOH . G 6 HOH A 103 703 157 HOH HOH . G 6 HOH A 104 704 106 HOH HOH . G 6 HOH A 105 705 100 HOH HOH . G 6 HOH A 106 706 166 HOH HOH . G 6 HOH A 107 707 152 HOH HOH . G 6 HOH A 108 708 60 HOH HOH . G 6 HOH A 109 709 63 HOH HOH . G 6 HOH A 110 710 58 HOH HOH . G 6 HOH A 111 711 46 HOH HOH . G 6 HOH A 112 712 67 HOH HOH . G 6 HOH A 113 713 93 HOH HOH . G 6 HOH A 114 714 97 HOH HOH . G 6 HOH A 115 715 155 HOH HOH . G 6 HOH A 116 716 31 HOH HOH . G 6 HOH A 117 717 38 HOH HOH . G 6 HOH A 118 718 75 HOH HOH . G 6 HOH A 119 719 145 HOH HOH . G 6 HOH A 120 720 79 HOH HOH . G 6 HOH A 121 721 20 HOH HOH . G 6 HOH A 122 722 124 HOH HOH . G 6 HOH A 123 723 66 HOH HOH . G 6 HOH A 124 724 56 HOH HOH . G 6 HOH A 125 725 82 HOH HOH . G 6 HOH A 126 726 30 HOH HOH . G 6 HOH A 127 727 130 HOH HOH . G 6 HOH A 128 728 103 HOH HOH . G 6 HOH A 129 729 113 HOH HOH . G 6 HOH A 130 730 136 HOH HOH . G 6 HOH A 131 731 84 HOH HOH . G 6 HOH A 132 732 41 HOH HOH . G 6 HOH A 133 733 147 HOH HOH . G 6 HOH A 134 734 148 HOH HOH . G 6 HOH A 135 735 110 HOH HOH . G 6 HOH A 136 736 146 HOH HOH . G 6 HOH A 137 737 154 HOH HOH . G 6 HOH A 138 738 159 HOH HOH . G 6 HOH A 139 739 160 HOH HOH . G 6 HOH A 140 740 43 HOH HOH . G 6 HOH A 141 741 49 HOH HOH . G 6 HOH A 142 742 73 HOH HOH . G 6 HOH A 143 743 104 HOH HOH . G 6 HOH A 144 744 131 HOH HOH . G 6 HOH A 145 745 78 HOH HOH . G 6 HOH A 146 746 32 HOH HOH . G 6 HOH A 147 747 77 HOH HOH . G 6 HOH A 148 748 28 HOH HOH . G 6 HOH A 149 749 158 HOH HOH . G 6 HOH A 150 750 156 HOH HOH . G 6 HOH A 151 751 80 HOH HOH . G 6 HOH A 152 752 44 HOH HOH . G 6 HOH A 153 753 115 HOH HOH . G 6 HOH A 154 754 47 HOH HOH . G 6 HOH A 155 755 3 HOH HOH . G 6 HOH A 156 756 138 HOH HOH . G 6 HOH A 157 757 5 HOH HOH . G 6 HOH A 158 758 55 HOH HOH . G 6 HOH A 159 759 22 HOH HOH . G 6 HOH A 160 760 126 HOH HOH . G 6 HOH A 161 761 11 HOH HOH . G 6 HOH A 162 762 153 HOH HOH . G 6 HOH A 163 763 143 HOH HOH . G 6 HOH A 164 764 140 HOH HOH . G 6 HOH A 165 765 133 HOH HOH . G 6 HOH A 166 766 149 HOH HOH . G 6 HOH A 167 767 139 HOH HOH . G 6 HOH A 168 768 69 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 12.109 _atom_site.Cartn_y 23.414 _atom_site.Cartn_z 39.13 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #