data_5HUU # _model_server_result.job_id FbXukMGqLja3RKTxg2MvuA _model_server_result.datetime_utc '2024-11-05 00:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5huu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5HUU # _exptl.entry_id 5HUU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HUU _cell.length_a 98.682 _cell.length_b 98.682 _cell.length_c 188.885 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HUU _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_585 -x,-y+3,z -1 0 0 0 -1 0 0 0 1 -148.023 256.383357 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 83 n n C1 O1 G6P sing 84 n n C1 O5 G6P sing 85 n n C1 H1 G6P sing 86 n n C2 C3 G6P sing 87 n n C2 O2 G6P sing 88 n n C2 H2 G6P sing 89 n n C3 C4 G6P sing 90 n n C3 O3 G6P sing 91 n n C3 H3 G6P sing 92 n n C4 C5 G6P sing 93 n n C4 O4 G6P sing 94 n n C4 H4 G6P sing 95 n n C5 C6 G6P sing 96 n n C5 O5 G6P sing 97 n n C5 H5 G6P sing 98 n n C6 O6 G6P sing 99 n n C6 H61 G6P sing 100 n n C6 H62 G6P sing 101 n n O1 HO1 G6P sing 102 n n O2 HO2 G6P sing 103 n n O3 HO3 G6P sing 104 n n O4 HO4 G6P sing 105 n n O6 P G6P sing 106 n n P O1P G6P sing 107 n n P O2P G6P sing 108 n n P O3P G6P doub 109 n n O1P HO1P G6P sing 110 n n O2P HO2P G6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5HUU _atom_sites.fract_transf_matrix[1][1] 0.010134 _atom_sites.fract_transf_matrix[1][2] 0.005851 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UDP A 1 501 501 UDP UDP . D 3 G6P A 1 502 502 G6P G6P . E 2 UDP B 1 501 501 UDP UDP . F 3 G6P B 1 502 502 G6P G6P . G 4 HOH A 1 601 12 HOH HOH . G 4 HOH A 2 602 29 HOH HOH . G 4 HOH A 3 603 41 HOH HOH . G 4 HOH A 4 604 35 HOH HOH . G 4 HOH A 5 605 27 HOH HOH . G 4 HOH A 6 606 50 HOH HOH . G 4 HOH A 7 607 40 HOH HOH . G 4 HOH A 8 608 51 HOH HOH . G 4 HOH A 9 609 25 HOH HOH . G 4 HOH A 10 610 8 HOH HOH . G 4 HOH A 11 611 4 HOH HOH . G 4 HOH A 12 612 49 HOH HOH . G 4 HOH A 13 613 9 HOH HOH . G 4 HOH A 14 614 17 HOH HOH . G 4 HOH A 15 615 3 HOH HOH . G 4 HOH A 16 616 14 HOH HOH . G 4 HOH A 17 617 19 HOH HOH . G 4 HOH A 18 618 24 HOH HOH . G 4 HOH A 19 619 15 HOH HOH . G 4 HOH A 20 620 10 HOH HOH . G 4 HOH A 21 621 7 HOH HOH . G 4 HOH A 22 622 16 HOH HOH . G 4 HOH A 23 623 2 HOH HOH . G 4 HOH A 24 624 20 HOH HOH . G 4 HOH A 25 625 43 HOH HOH . G 4 HOH A 26 626 39 HOH HOH . G 4 HOH A 27 627 37 HOH HOH . G 4 HOH A 28 628 48 HOH HOH . G 4 HOH A 29 629 36 HOH HOH . G 4 HOH A 30 630 38 HOH HOH . G 4 HOH A 31 631 30 HOH HOH . H 4 HOH B 1 601 28 HOH HOH . H 4 HOH B 2 602 55 HOH HOH . H 4 HOH B 3 603 42 HOH HOH . H 4 HOH B 4 604 46 HOH HOH . H 4 HOH B 5 605 22 HOH HOH . H 4 HOH B 6 606 34 HOH HOH . H 4 HOH B 7 607 26 HOH HOH . H 4 HOH B 8 608 5 HOH HOH . H 4 HOH B 9 609 18 HOH HOH . H 4 HOH B 10 610 56 HOH HOH . H 4 HOH B 11 611 54 HOH HOH . H 4 HOH B 12 612 6 HOH HOH . H 4 HOH B 13 613 47 HOH HOH . H 4 HOH B 14 614 31 HOH HOH . H 4 HOH B 15 615 21 HOH HOH . H 4 HOH B 16 616 13 HOH HOH . H 4 HOH B 17 617 53 HOH HOH . H 4 HOH B 18 618 45 HOH HOH . H 4 HOH B 19 619 33 HOH HOH . H 4 HOH B 20 620 1 HOH HOH . H 4 HOH B 21 621 32 HOH HOH . H 4 HOH B 22 622 11 HOH HOH . H 4 HOH B 23 623 52 HOH HOH . H 4 HOH B 24 624 23 HOH HOH . H 4 HOH B 25 625 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . . . D 3 -49.056 129.795 11.709 1 57.49 ? C1 G6P 502 A 1 HETATM 2 C C2 G6P . . . D 3 -48.937 128.597 10.793 1 51.31 ? C2 G6P 502 A 1 HETATM 3 C C3 G6P . . . D 3 -48.922 129.013 9.369 1 53.3 ? C3 G6P 502 A 1 HETATM 4 C C4 G6P . . . D 3 -50.18 129.749 9.044 1 60.43 ? C4 G6P 502 A 1 HETATM 5 C C5 G6P . . . D 3 -50.361 130.97 9.939 1 59.76 ? C5 G6P 502 A 1 HETATM 6 C C6 G6P . . . D 3 -51.722 131.574 9.727 1 55.8 ? C6 G6P 502 A 1 HETATM 7 O O1 G6P . . . D 3 -47.901 130.559 11.651 1 62.7 ? O1 G6P 502 A 1 HETATM 8 O O2 G6P . . . D 3 -47.74 127.864 11.117 1 47.15 ? O2 G6P 502 A 1 HETATM 9 O O3 G6P . . . D 3 -48.8 127.841 8.518 1 54.71 ? O3 G6P 502 A 1 HETATM 10 O O4 G6P . . . D 3 -50.168 130.158 7.668 1 62.48 ? O4 G6P 502 A 1 HETATM 11 O O5 G6P . . . D 3 -50.23 130.641 11.361 1 58.33 ? O5 G6P 502 A 1 HETATM 12 O O6 G6P . . . D 3 -52.177 131.328 8.41 1 74.11 ? O6 G6P 502 A 1 HETATM 13 P P G6P . . . D 3 -53.726 131.183 8.12 1 61.77 ? P G6P 502 A 1 HETATM 14 O O1P G6P . . . D 3 -54.498 132.358 8.679 1 63.54 -1 O1P G6P 502 A 1 HETATM 15 O O2P G6P . . . D 3 -54.237 129.892 8.709 1 61.18 -1 O2P G6P 502 A 1 HETATM 16 O O3P G6P . . . D 3 -53.929 131.134 6.625 1 87.37 ? O3P G6P 502 A 1 HETATM 17 H H1 G6P . . . D 3 -49.168 129.473 12.626 1 68.99 ? H1 G6P 502 A 1 HETATM 18 H H2 G6P . . . D 3 -49.709 128.014 10.939 1 61.57 ? H2 G6P 502 A 1 HETATM 19 H H3 G6P . . . D 3 -48.157 129.602 9.215 1 63.96 ? H3 G6P 502 A 1 HETATM 20 H H4 G6P . . . D 3 -50.937 129.146 9.183 1 72.52 ? H4 G6P 502 A 1 HETATM 21 H H5 G6P . . . D 3 -49.683 131.632 9.707 1 71.71 ? H5 G6P 502 A 1 HETATM 22 H H61 G6P . . . D 3 -52.353 131.18 10.365 1 66.96 ? H61 G6P 502 A 1 HETATM 23 H H62 G6P . . . D 3 -51.674 132.542 9.876 1 66.96 ? H62 G6P 502 A 1 HETATM 24 H HO1 G6P . . . D 3 -48.015 131.306 12.12 1 75.24 ? HO1 G6P 502 A 1 HETATM 25 H HO2 G6P . . . D 3 -47.627 127.206 10.53 1 56.57 ? HO2 G6P 502 A 1 HETATM 26 H HO3 G6P . . . D 3 -48.398 128.067 7.758 1 65.66 ? HO3 G6P 502 A 1 HETATM 27 H HO4 G6P . . . D 3 -49.983 129.458 7.153 1 74.97 ? HO4 G6P 502 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #