data_5HV1 # _model_server_result.job_id jXLGxoBOQ-3e1n1SR1JmWw _model_server_result.datetime_utc '2024-11-15 20:28:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 5HV1 # _exptl.entry_id 5HV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HV1 _cell.length_a 151.09 _cell.length_b 151.09 _cell.length_c 191.648 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 325 A GLN 309 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 B O1G ANP . A ANP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 B O1B ANP . A ANP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 B O3A ANP . A ANP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5HV1 _atom_sites.fract_transf_matrix[1][1] 0.006619 _atom_sites.fract_transf_matrix[1][2] 0.003821 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 901 868 ANP ANP . C 3 RFP A 1 902 869 RFP RFP . D 4 MG A 1 903 870 MG MG . E 5 HOH A 1 1001 3 HOH HOH . E 5 HOH A 2 1002 1 HOH HOH . E 5 HOH A 3 1003 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -45.574 51.229 19.281 1 101.4 ? PG ANP 901 A 1 HETATM 2 O O1G ANP . . . B 2 -45.367 49.766 19.518 1 102.33 ? O1G ANP 901 A 1 HETATM 3 O O2G ANP . . . B 2 -47.07 51.618 19.283 1 107.61 ? O2G ANP 901 A 1 HETATM 4 O O3G ANP . . . B 2 -45.096 51.552 17.853 1 105.76 ? O3G ANP 901 A 1 HETATM 5 P PB ANP . . . B 2 -44.984 51.322 21.895 1 104.25 ? PB ANP 901 A 1 HETATM 6 O O1B ANP . . . B 2 -43.907 50.321 22.071 1 103.84 ? O1B ANP 901 A 1 HETATM 7 O O2B ANP . . . B 2 -44.976 52.31 23.075 1 106.58 ? O2B ANP 901 A 1 HETATM 8 N N3B ANP . . . B 2 -44.757 52.156 20.454 1 103.35 ? N3B ANP 901 A 1 HETATM 9 P PA ANP . . . B 2 -47.23 50.586 23.083 1 114.54 ? PA ANP 901 A 1 HETATM 10 O O1A ANP . . . B 2 -48.388 49.684 23.103 1 115.39 ? O1A ANP 901 A 1 HETATM 11 O O2A ANP . . . B 2 -47.56 52.075 23.158 1 116.87 ? O2A ANP 901 A 1 HETATM 12 O O3A ANP . . . B 2 -46.35 50.559 21.784 1 105.01 ? O3A ANP 901 A 1 HETATM 13 O O5' ANP . . . B 2 -46.284 50.121 24.24 1 108.06 ? O5' ANP 901 A 1 HETATM 14 C C5' ANP . . . B 2 -46.27 50.831 25.48 1 109.1 ? C5' ANP 901 A 1 HETATM 15 C C4' ANP . . . B 2 -45.222 50.24 26.375 1 104.94 ? C4' ANP 901 A 1 HETATM 16 O O4' ANP . . . B 2 -45.744 50.184 27.709 1 105.76 ? O4' ANP 901 A 1 HETATM 17 C C3' ANP . . . B 2 -44.815 48.825 25.97 1 101.95 ? C3' ANP 901 A 1 HETATM 18 O O3' ANP . . . B 2 -43.482 48.826 25.487 1 99.99 ? O3' ANP 901 A 1 HETATM 19 C C2' ANP . . . B 2 -44.907 48.006 27.26 1 101.82 ? C2' ANP 901 A 1 HETATM 20 O O2' ANP . . . B 2 -43.621 47.812 27.85 1 101.18 ? O2' ANP 901 A 1 HETATM 21 C C1' ANP . . . B 2 -45.825 48.846 28.149 1 107.52 ? C1' ANP 901 A 1 HETATM 22 N N9 ANP . . . B 2 -47.211 48.44 28.12 1 106.67 ? N9 ANP 901 A 1 HETATM 23 C C8 ANP . . . B 2 -48.12 48.542 27.087 1 109.55 ? C8 ANP 901 A 1 HETATM 24 N N7 ANP . . . B 2 -49.304 48.092 27.352 1 112.88 ? N7 ANP 901 A 1 HETATM 25 C C5 ANP . . . B 2 -49.208 47.642 28.667 1 116.03 ? C5 ANP 901 A 1 HETATM 26 C C6 ANP . . . B 2 -50.121 47.045 29.539 1 117.27 ? C6 ANP 901 A 1 HETATM 27 N N6 ANP . . . B 2 -51.407 46.771 29.242 1 118.51 ? N6 ANP 901 A 1 HETATM 28 N N1 ANP . . . B 2 -49.688 46.722 30.77 1 118.18 ? N1 ANP 901 A 1 HETATM 29 C C2 ANP . . . B 2 -48.419 46.976 31.102 1 117.14 ? C2 ANP 901 A 1 HETATM 30 N N3 ANP . . . B 2 -47.461 47.532 30.361 1 115.27 ? N3 ANP 901 A 1 HETATM 31 C C4 ANP . . . B 2 -47.926 47.846 29.133 1 113.5 ? C4 ANP 901 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #