data_5HV1
#
_model_server_result.job_id            e6cUCTyNmIbPO3sYuBp94Q 
_model_server_result.datetime_utc      '2024-11-15 20:48:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    5HV1 
#
_exptl.entry_id    5HV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              822.94 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RIFAMPICIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HV1 
_cell.length_a            151.09 
_cell.length_b            151.09 
_cell.length_c            191.648 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLN 325 A GLN 309 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 B O1G ANP . A ANP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc3 B O1B ANP . A ANP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc4 B O3A ANP . A ANP 901 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
#
_chem_comp.formula           'C43 H58 N4 O12' 
_chem_comp.formula_weight    822.94 
_chem_comp.id                RFP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RIFAMPICIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RFP doub 327 n y 
C1 C9 RFP sing 328 n y 
C1 O1 RFP sing 329 n n 
C2 C3 RFP sing 330 n y 
C2 N1 RFP sing 331 n n 
C3 C4 RFP doub 332 n y 
C3 C43 RFP sing 333 n n 
C4 C10 RFP sing 334 n y 
C4 O12 RFP sing 335 n n 
C5 C6 RFP doub 336 n y 
C5 C10 RFP sing 337 n y 
C5 C11 RFP sing 338 n n 
C6 C7 RFP sing 339 n y 
C6 O3 RFP sing 340 n n 
C7 C8 RFP doub 341 n y 
C7 C14 RFP sing 342 n n 
C8 C9 RFP sing 343 n y 
C8 O2 RFP sing 344 n n 
C9 C10 RFP doub 345 n y 
C11 C12 RFP sing 346 n n 
C11 O4 RFP doub 347 n n 
C12 C13 RFP sing 348 n n 
C12 O3 RFP sing 349 n n 
C12 O5 RFP sing 350 n n 
C13 H131 RFP sing 351 n n 
C13 H132 RFP sing 352 n n 
C13 H133 RFP sing 353 n n 
C14 H141 RFP sing 354 n n 
C14 H142 RFP sing 355 n n 
C14 H143 RFP sing 356 n n 
C15 C16 RFP sing 357 n n 
C15 N1 RFP sing 358 n n 
C15 O11 RFP doub 359 n n 
C16 C17 RFP doub 360 z n 
C16 C30 RFP sing 361 n n 
C17 C18 RFP sing 362 n n 
C17 H17C RFP sing 363 n n 
C18 C19 RFP doub 364 e n 
C18 H18C RFP sing 365 n n 
C19 C20 RFP sing 366 n n 
C19 H19C RFP sing 367 n n 
C20 C21 RFP sing 368 n n 
C20 C31 RFP sing 369 n n 
C20 H20C RFP sing 370 n n 
C21 C22 RFP sing 371 n n 
C21 O10 RFP sing 372 n n 
C21 H211 RFP sing 373 n n 
C22 C23 RFP sing 374 n n 
C22 C32 RFP sing 375 n n 
C22 H22C RFP sing 376 n n 
C23 C24 RFP sing 377 n n 
C23 O9 RFP sing 378 n n 
C23 H23C RFP sing 379 n n 
C24 C25 RFP sing 380 n n 
C24 C33 RFP sing 381 n n 
C24 H24C RFP sing 382 n n 
C25 C26 RFP sing 383 n n 
C25 O7 RFP sing 384 n n 
C25 H25C RFP sing 385 n n 
C26 C27 RFP sing 386 n n 
C26 C34 RFP sing 387 n n 
C26 H26C RFP sing 388 n n 
C27 C28 RFP sing 389 n n 
C27 O6 RFP sing 390 n n 
C27 H27C RFP sing 391 n n 
C28 C29 RFP doub 392 e n 
C28 H28C RFP sing 393 n n 
C29 O5 RFP sing 394 n n 
C29 H29C RFP sing 395 n n 
C30 H301 RFP sing 396 n n 
C30 H302 RFP sing 397 n n 
C30 H303 RFP sing 398 n n 
C31 H311 RFP sing 399 n n 
C31 H312 RFP sing 400 n n 
C31 H313 RFP sing 401 n n 
C32 H321 RFP sing 402 n n 
C32 H322 RFP sing 403 n n 
C32 H323 RFP sing 404 n n 
C33 H331 RFP sing 405 n n 
C33 H332 RFP sing 406 n n 
C33 H333 RFP sing 407 n n 
C34 H341 RFP sing 408 n n 
C34 H342 RFP sing 409 n n 
C34 H343 RFP sing 410 n n 
C35 C36 RFP sing 411 n n 
C35 O7 RFP sing 412 n n 
C35 O8 RFP doub 413 n n 
C36 H361 RFP sing 414 n n 
C36 H362 RFP sing 415 n n 
C36 H363 RFP sing 416 n n 
C37 O6 RFP sing 417 n n 
C37 H371 RFP sing 418 n n 
C37 H372 RFP sing 419 n n 
C37 H373 RFP sing 420 n n 
C38 N4 RFP sing 421 n n 
C38 H381 RFP sing 422 n n 
C38 H382 RFP sing 423 n n 
C38 H383 RFP sing 424 n n 
C39 C40 RFP sing 425 n n 
C39 N4 RFP sing 426 n n 
C39 H391 RFP sing 427 n n 
C39 H392 RFP sing 428 n n 
C40 N3 RFP sing 429 n n 
C40 H401 RFP sing 430 n n 
C40 H402 RFP sing 431 n n 
C41 C42 RFP sing 432 n n 
C41 N3 RFP sing 433 n n 
C41 H411 RFP sing 434 n n 
C41 H412 RFP sing 435 n n 
C42 N4 RFP sing 436 n n 
C42 H421 RFP sing 437 n n 
C42 H422 RFP sing 438 n n 
C43 N2 RFP doub 439 e n 
C43 HC43 RFP sing 440 n n 
N1 HN1 RFP sing 441 n n 
N2 N3 RFP sing 442 n n 
O1 HO1 RFP sing 443 n n 
O2 HO2 RFP sing 444 n n 
O9 HO9 RFP sing 445 n n 
O10 H10O RFP sing 446 n n 
O12 H12O RFP sing 447 n n 
#
_atom_sites.entry_id                     5HV1 
_atom_sites.fract_transf_matrix[1][1]    0.006619 
_atom_sites.fract_transf_matrix[1][2]    0.003821 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005218 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 901 868 ANP ANP . 
C 3 RFP A 1 902 869 RFP RFP . 
D 4 MG A 1 903 870 MG MG . 
E 5 HOH A 1 1001 3 HOH HOH . 
E 5 HOH A 2 1002 1 HOH HOH . 
E 5 HOH A 3 1003 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RFP . . . C 3 -20.737 30.966 -10.718 1 0.25 ? C1 RFP 902 A 1 
HETATM 2 C C2 RFP . . . C 3 -20.661 30.157 -11.931 1 2.1 ? C2 RFP 902 A 1 
HETATM 3 C C3 RFP . . . C 3 -20.361 28.753 -11.853 1 2.06 ? C3 RFP 902 A 1 
HETATM 4 C C4 RFP . . . C 3 -20.091 28.149 -10.581 1 3.03 ? C4 RFP 902 A 1 
HETATM 5 C C5 RFP . . . C 3 -19.857 28.383 -8.139 1 6.55 ? C5 RFP 902 A 1 
HETATM 6 C C6 RFP . . . C 3 -19.865 29.1 -6.924 1 10.66 ? C6 RFP 902 A 1 
HETATM 7 C C7 RFP . . . C 3 -20.176 30.523 -6.923 1 2.54 ? C7 RFP 902 A 1 
HETATM 8 C C8 RFP . . . C 3 -20.46 31.157 -8.203 1 0.79 ? C8 RFP 902 A 1 
HETATM 9 C C9 RFP . . . C 3 -20.459 30.378 -9.434 1 1.88 ? C9 RFP 902 A 1 
HETATM 10 C C10 RFP . . . C 3 -20.129 28.971 -9.405 1 4.19 ? C10 RFP 902 A 1 
HETATM 11 C C11 RFP . . . C 3 -19.531 27.044 -7.812 1 12.55 ? C11 RFP 902 A 1 
HETATM 12 C C12 RFP . . . C 3 -19.219 27.023 -6.398 1 15.02 ? C12 RFP 902 A 1 
HETATM 13 C C13 RFP . . . C 3 -20.112 26.038 -5.773 1 16.03 ? C13 RFP 902 A 1 
HETATM 14 C C14 RFP . . . C 3 -20.194 31.316 -5.678 1 1.67 ? C14 RFP 902 A 1 
HETATM 15 C C15 RFP . . . C 3 -20.971 31.81 -13.487 1 28.1 ? C15 RFP 902 A 1 
HETATM 16 C C16 RFP . . . C 3 -21.155 32.165 -14.844 1 27.95 ? C16 RFP 902 A 1 
HETATM 17 C C17 RFP . . . C 3 -20.11 32.439 -15.583 1 27 ? C17 RFP 902 A 1 
HETATM 18 C C18 RFP . . . C 3 -18.731 32.358 -15.127 1 27.32 ? C18 RFP 902 A 1 
HETATM 19 C C19 RFP . . . C 3 -17.804 32.396 -16.034 1 26.97 ? C19 RFP 902 A 1 
HETATM 20 C C20 RFP . . . C 3 -16.344 32.315 -15.759 1 28 ? C20 RFP 902 A 1 
HETATM 21 C C21 RFP . . . C 3 -16 31.858 -14.346 1 27.77 ? C21 RFP 902 A 1 
HETATM 22 C C22 RFP . . . C 3 -14.947 30.787 -14.253 1 37.01 ? C22 RFP 902 A 1 
HETATM 23 C C23 RFP . . . C 3 -14.461 30.534 -12.862 1 4.5 ? C23 RFP 902 A 1 
HETATM 24 C C24 RFP . . . C 3 -15.49 29.992 -11.904 1 4.32 ? C24 RFP 902 A 1 
HETATM 25 C C25 RFP . . . C 3 -14.93 29.856 -10.512 1 12.07 ? C25 RFP 902 A 1 
HETATM 26 C C26 RFP . . . C 3 -15.979 29.454 -9.511 1 3.55 ? C26 RFP 902 A 1 
HETATM 27 C C27 RFP . . . C 3 -15.398 28.867 -8.251 1 5.22 ? C27 RFP 902 A 1 
HETATM 28 C C28 RFP . . . C 3 -16.511 28.5 -7.309 1 12.19 ? C28 RFP 902 A 1 
HETATM 29 C C29 RFP . . . C 3 -16.805 27.227 -7.043 1 11.31 ? C29 RFP 902 A 1 
HETATM 30 C C30 RFP . . . C 3 -22.505 32.289 -15.364 1 27.63 ? C30 RFP 902 A 1 
HETATM 31 C C31 RFP . . . C 3 -15.952 31.371 -16.858 1 36.7 ? C31 RFP 902 A 1 
HETATM 32 C C32 RFP . . . C 3 -13.755 31.242 -15.04 1 37.26 ? C32 RFP 902 A 1 
HETATM 33 C C33 RFP . . . C 3 -15.922 28.651 -12.356 1 2.23 ? C33 RFP 902 A 1 
HETATM 34 C C34 RFP . . . C 3 -16.781 30.675 -9.161 1 12.07 ? C34 RFP 902 A 1 
HETATM 35 C C35 RFP . . . C 3 -12.597 29.447 -10.21 1 5.53 ? C35 RFP 902 A 1 
HETATM 36 C C36 RFP . . . C 3 -11.424 28.607 -10.485 1 5.5 ? C36 RFP 902 A 1 
HETATM 37 C C37 RFP . . . C 3 -14.026 29.628 -6.495 1 13.84 ? C37 RFP 902 A 1 
HETATM 38 C C38 RFP . . . C 3 -17.699 24.416 -17.176 1 7.03 ? C38 RFP 902 A 1 
HETATM 39 C C39 RFP . . . C 3 -18.832 24.532 -15.154 1 7.42 ? C39 RFP 902 A 1 
HETATM 40 C C40 RFP . . . C 3 -19.509 25.458 -14.178 1 5.58 ? C40 RFP 902 A 1 
HETATM 41 C C41 RFP . . . C 3 -18.791 27.354 -15.433 1 3.3 ? C41 RFP 902 A 1 
HETATM 42 C C42 RFP . . . C 3 -17.875 26.472 -16.248 1 4.46 ? C42 RFP 902 A 1 
HETATM 43 C C43 RFP . . . C 3 -20.3 27.926 -13.027 1 2.7 ? C43 RFP 902 A 1 
HETATM 44 N N1 RFP . . . C 3 -20.937 30.571 -13.153 1 0.29 ? N1 RFP 902 A 1 
HETATM 45 N N2 RFP . . . C 3 -19.153 27.532 -13.227 1 3.24 ? N2 RFP 902 A 1 
HETATM 46 N N3 RFP . . . C 3 -18.766 26.716 -14.168 1 5.57 ? N3 RFP 902 A 1 
HETATM 47 N N4 RFP . . . C 3 -18.592 25.236 -16.405 1 5.94 ? N4 RFP 902 A 1 
HETATM 48 O O1 RFP . . . C 3 -21.03 32.258 -10.828 1 28.23 ? O1 RFP 902 A 1 
HETATM 49 O O2 RFP . . . C 3 -20.747 32.441 -8.247 1 36.83 ? O2 RFP 902 A 1 
HETATM 50 O O3 RFP . . . C 3 -19.55 28.269 -5.924 1 9.51 ? O3 RFP 902 A 1 
HETATM 51 O O4 RFP . . . C 3 -19.563 26.136 -8.579 1 14.11 ? O4 RFP 902 A 1 
HETATM 52 O O5 RFP . . . C 3 -17.886 26.831 -6.144 1 10.4 ? O5 RFP 902 A 1 
HETATM 53 O O6 RFP . . . C 3 -14.633 29.909 -7.73 1 7.17 ? O6 RFP 902 A 1 
HETATM 54 O O7 RFP . . . C 3 -13.889 28.925 -10.493 1 5.64 ? O7 RFP 902 A 1 
HETATM 55 O O8 RFP . . . C 3 -12.446 30.526 -9.758 1 7.78 ? O8 RFP 902 A 1 
HETATM 56 O O9 RFP . . . C 3 -14.092 31.813 -12.438 1 11.18 ? O9 RFP 902 A 1 
HETATM 57 O O10 RFP . . . C 3 -15.387 32.927 -13.7 1 26.89 ? O10 RFP 902 A 1 
HETATM 58 O O11 RFP . . . C 3 -20.793 32.722 -12.724 1 6.58 ? O11 RFP 902 A 1 
HETATM 59 O O12 RFP . . . C 3 -19.779 26.884 -10.486 1 4.32 ? O12 RFP 902 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           59 
#