data_5HV7 # _model_server_result.job_id Y6gEQTqvkjJQFwytCaSb6g _model_server_result.datetime_utc '2025-01-11 15:53:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5HV7 # _exptl.entry_id 5HV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-ribulose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.44 _cell.angle_gamma 90 _cell.entry_id 5HV7 _cell.length_a 102.633 _cell.length_b 47.012 _cell.length_c 88.655 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 300 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 298 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 300 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 298 _struct_conn.ptnr2_symmetry 2_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id RBL _chem_comp.mon_nstd_flag . _chem_comp.name D-ribulose _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RBL sing 277 n n C1 O1 RBL sing 278 n n C2 C3 RBL sing 279 n n C2 O2 RBL doub 280 n n C3 O3 RBL sing 281 n n C3 C4 RBL sing 282 n n C4 O4 RBL sing 283 n n C4 C5 RBL sing 284 n n C5 O5 RBL sing 285 n n C1 H11 RBL sing 286 n n C1 H12 RBL sing 287 n n C3 H3 RBL sing 288 n n O3 HO3 RBL sing 289 n n C4 H4 RBL sing 290 n n O4 HO4 RBL sing 291 n n C5 H51 RBL sing 292 n n C5 H52 RBL sing 293 n n O5 HO5 RBL sing 294 n n O1 HO1 RBL sing 295 n n # _atom_sites.entry_id 5HV7 _atom_sites.fract_transf_matrix[1][1] 0.009743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000246 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011283 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBL A 1 501 1 RBL RBL . C 2 RBL A 1 502 2 RBL RBL . D 3 HOH A 1 601 6 HOH HOH . D 3 HOH A 2 602 39 HOH HOH . D 3 HOH A 3 603 137 HOH HOH . D 3 HOH A 4 604 126 HOH HOH . D 3 HOH A 5 605 95 HOH HOH . D 3 HOH A 6 606 81 HOH HOH . D 3 HOH A 7 607 94 HOH HOH . D 3 HOH A 8 608 62 HOH HOH . D 3 HOH A 9 609 116 HOH HOH . D 3 HOH A 10 610 5 HOH HOH . D 3 HOH A 11 611 18 HOH HOH . D 3 HOH A 12 612 2 HOH HOH . D 3 HOH A 13 613 142 HOH HOH . D 3 HOH A 14 614 91 HOH HOH . D 3 HOH A 15 615 123 HOH HOH . D 3 HOH A 16 616 135 HOH HOH . D 3 HOH A 17 617 28 HOH HOH . D 3 HOH A 18 618 43 HOH HOH . D 3 HOH A 19 619 53 HOH HOH . D 3 HOH A 20 620 36 HOH HOH . D 3 HOH A 21 621 128 HOH HOH . D 3 HOH A 22 622 57 HOH HOH . D 3 HOH A 23 623 13 HOH HOH . D 3 HOH A 24 624 90 HOH HOH . D 3 HOH A 25 625 131 HOH HOH . D 3 HOH A 26 626 16 HOH HOH . D 3 HOH A 27 627 97 HOH HOH . D 3 HOH A 28 628 4 HOH HOH . D 3 HOH A 29 629 38 HOH HOH . D 3 HOH A 30 630 99 HOH HOH . D 3 HOH A 31 631 130 HOH HOH . D 3 HOH A 32 632 47 HOH HOH . D 3 HOH A 33 633 35 HOH HOH . D 3 HOH A 34 634 65 HOH HOH . D 3 HOH A 35 635 102 HOH HOH . D 3 HOH A 36 636 67 HOH HOH . D 3 HOH A 37 637 9 HOH HOH . D 3 HOH A 38 638 111 HOH HOH . D 3 HOH A 39 639 26 HOH HOH . D 3 HOH A 40 640 108 HOH HOH . D 3 HOH A 41 641 85 HOH HOH . D 3 HOH A 42 642 7 HOH HOH . D 3 HOH A 43 643 75 HOH HOH . D 3 HOH A 44 644 17 HOH HOH . D 3 HOH A 45 645 98 HOH HOH . D 3 HOH A 46 646 127 HOH HOH . D 3 HOH A 47 647 52 HOH HOH . D 3 HOH A 48 648 21 HOH HOH . D 3 HOH A 49 649 113 HOH HOH . D 3 HOH A 50 650 10 HOH HOH . D 3 HOH A 51 651 24 HOH HOH . D 3 HOH A 52 652 71 HOH HOH . D 3 HOH A 53 653 1 HOH HOH . D 3 HOH A 54 654 70 HOH HOH . D 3 HOH A 55 655 124 HOH HOH . D 3 HOH A 56 656 115 HOH HOH . D 3 HOH A 57 657 8 HOH HOH . D 3 HOH A 58 658 56 HOH HOH . D 3 HOH A 59 659 20 HOH HOH . D 3 HOH A 60 660 88 HOH HOH . D 3 HOH A 61 661 22 HOH HOH . D 3 HOH A 62 662 48 HOH HOH . D 3 HOH A 63 663 96 HOH HOH . D 3 HOH A 64 664 73 HOH HOH . D 3 HOH A 65 665 76 HOH HOH . D 3 HOH A 66 666 37 HOH HOH . D 3 HOH A 67 667 50 HOH HOH . D 3 HOH A 68 668 27 HOH HOH . D 3 HOH A 69 669 120 HOH HOH . D 3 HOH A 70 670 34 HOH HOH . D 3 HOH A 71 671 77 HOH HOH . D 3 HOH A 72 672 15 HOH HOH . D 3 HOH A 73 673 29 HOH HOH . D 3 HOH A 74 674 25 HOH HOH . D 3 HOH A 75 675 132 HOH HOH . D 3 HOH A 76 676 105 HOH HOH . D 3 HOH A 77 677 63 HOH HOH . D 3 HOH A 78 678 45 HOH HOH . D 3 HOH A 79 679 11 HOH HOH . D 3 HOH A 80 680 103 HOH HOH . D 3 HOH A 81 681 32 HOH HOH . D 3 HOH A 82 682 19 HOH HOH . D 3 HOH A 83 683 79 HOH HOH . D 3 HOH A 84 684 14 HOH HOH . D 3 HOH A 85 685 42 HOH HOH . D 3 HOH A 86 686 89 HOH HOH . D 3 HOH A 87 687 46 HOH HOH . D 3 HOH A 88 688 23 HOH HOH . D 3 HOH A 89 689 12 HOH HOH . D 3 HOH A 90 690 78 HOH HOH . D 3 HOH A 91 691 106 HOH HOH . D 3 HOH A 92 692 72 HOH HOH . D 3 HOH A 93 693 117 HOH HOH . D 3 HOH A 94 694 104 HOH HOH . D 3 HOH A 95 695 86 HOH HOH . D 3 HOH A 96 696 74 HOH HOH . D 3 HOH A 97 697 61 HOH HOH . D 3 HOH A 98 698 30 HOH HOH . D 3 HOH A 99 699 49 HOH HOH . D 3 HOH A 100 700 44 HOH HOH . D 3 HOH A 101 701 125 HOH HOH . D 3 HOH A 102 702 129 HOH HOH . D 3 HOH A 103 703 122 HOH HOH . D 3 HOH A 104 704 68 HOH HOH . D 3 HOH A 105 705 58 HOH HOH . D 3 HOH A 106 706 109 HOH HOH . D 3 HOH A 107 707 110 HOH HOH . D 3 HOH A 108 708 112 HOH HOH . D 3 HOH A 109 709 60 HOH HOH . D 3 HOH A 110 710 41 HOH HOH . D 3 HOH A 111 711 101 HOH HOH . D 3 HOH A 112 712 33 HOH HOH . D 3 HOH A 113 713 121 HOH HOH . D 3 HOH A 114 714 93 HOH HOH . D 3 HOH A 115 715 3 HOH HOH . D 3 HOH A 116 716 59 HOH HOH . D 3 HOH A 117 717 31 HOH HOH . D 3 HOH A 118 718 134 HOH HOH . D 3 HOH A 119 719 136 HOH HOH . D 3 HOH A 120 720 141 HOH HOH . D 3 HOH A 121 721 40 HOH HOH . D 3 HOH A 122 722 55 HOH HOH . D 3 HOH A 123 723 51 HOH HOH . D 3 HOH A 124 724 69 HOH HOH . D 3 HOH A 125 725 100 HOH HOH . D 3 HOH A 126 726 80 HOH HOH . D 3 HOH A 127 727 140 HOH HOH . D 3 HOH A 128 728 118 HOH HOH . D 3 HOH A 129 729 138 HOH HOH . D 3 HOH A 130 730 92 HOH HOH . D 3 HOH A 131 731 84 HOH HOH . D 3 HOH A 132 732 87 HOH HOH . D 3 HOH A 133 733 133 HOH HOH . D 3 HOH A 134 734 143 HOH HOH . D 3 HOH A 135 735 64 HOH HOH . D 3 HOH A 136 736 82 HOH HOH . D 3 HOH A 137 737 107 HOH HOH . D 3 HOH A 138 738 54 HOH HOH . D 3 HOH A 139 739 139 HOH HOH . D 3 HOH A 140 740 66 HOH HOH . D 3 HOH A 141 741 119 HOH HOH . D 3 HOH A 142 742 83 HOH HOH . D 3 HOH A 143 743 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RBL . . . C 2 -18.368 -5.726 19.428 1 54.85 ? C1 RBL 502 A 1 HETATM 2 C C2 RBL . . . C 2 -18.479 -6.945 20.318 1 51.29 ? C2 RBL 502 A 1 HETATM 3 C C3 RBL . . . C 2 -18.029 -6.839 21.758 1 51.22 ? C3 RBL 502 A 1 HETATM 4 O O3 RBL . . . C 2 -17.636 -5.51 22.012 1 66.86 ? O3 RBL 502 A 1 HETATM 5 C C4 RBL . . . C 2 -16.874 -7.771 22.065 1 53.3 ? C4 RBL 502 A 1 HETATM 6 O O4 RBL . . . C 2 -16.107 -7.208 23.102 1 49.26 ? O4 RBL 502 A 1 HETATM 7 C C5 RBL . . . C 2 -15.992 -8.004 20.855 1 57.63 ? C5 RBL 502 A 1 HETATM 8 O O5 RBL . . . C 2 -14.709 -7.465 21.08 1 65.86 ? O5 RBL 502 A 1 HETATM 9 O O2 RBL . . . C 2 -18.94 -7.985 19.883 1 48.09 ? O2 RBL 502 A 1 HETATM 10 O O1 RBL . . . C 2 -17.033 -5.586 18.999 1 58.03 ? O1 RBL 502 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #