data_5HVB
#
_model_server_result.job_id            -Dypo_GiDbKU38HA87H0gQ 
_model_server_result.datetime_utc      '2024-11-23 07:49:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hvb 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
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_entry.id    5HVB 
#
_exptl.entry_id    5HVB 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              338.45 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-methyl-6-(naphthalen-1-ylsulfanyl)thieno[2,3-d]pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5HVB 
_cell.length_a            85.973 
_cell.length_b            85.973 
_cell.length_c            76.833 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HVB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H14 N4 S2' 
_chem_comp.formula_weight    338.45 
_chem_comp.id                65O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-methyl-6-(naphthalen-1-ylsulfanyl)thieno[2,3-d]pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAF CAI 65O doub 1 n y 
CAF CAG 65O sing 2 n y 
CAI CAT 65O sing 3 n y 
CAG CAR 65O doub 4 n y 
CAT CAH 65O doub 5 n y 
CAT CAU 65O sing 6 n y 
CAH CAD 65O sing 7 n y 
CAR CAU 65O sing 8 n y 
CAR SAM 65O sing 9 n n 
CAU CAJ 65O doub 10 n y 
CAA CAQ 65O sing 11 n n 
CAD CAE 65O doub 12 n y 
SAM CAS 65O sing 13 n n 
CAJ CAE 65O sing 14 n y 
CAQ CAS 65O doub 15 n y 
CAQ C5 65O sing 16 n y 
CAS SAN 65O sing 17 n y 
NAC C6 65O sing 18 n n 
C5 C6 65O doub 19 n y 
C5 C4 65O sing 20 n y 
C6 N1 65O sing 21 n y 
SAN C4 65O sing 22 n y 
C4 N3 65O doub 23 n y 
N1 C2 65O doub 24 n y 
N3 C2 65O sing 25 n y 
C2 NAB 65O sing 26 n n 
CAA H1 65O sing 27 n n 
CAA H2 65O sing 28 n n 
CAA H3 65O sing 29 n n 
NAC H4 65O sing 30 n n 
NAC H5 65O sing 31 n n 
NAB H6 65O sing 32 n n 
NAB H7 65O sing 33 n n 
CAJ H8 65O sing 34 n n 
CAE H9 65O sing 35 n n 
CAD H10 65O sing 36 n n 
CAH H11 65O sing 37 n n 
CAI H12 65O sing 38 n n 
CAF H13 65O sing 39 n n 
CAG H14 65O sing 40 n n 
#
_atom_sites.entry_id                     5HVB 
_atom_sites.fract_transf_matrix[1][1]    0.011632 
_atom_sites.fract_transf_matrix[1][2]    0.006715 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013015 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 65O A 1 201 1 65O DRG . 
C 3 NDP A 1 202 1 NDP NDP . 
D 4 HOH A 1 301 13 HOH HOH . 
D 4 HOH A 2 302 25 HOH HOH . 
D 4 HOH A 3 303 36 HOH HOH . 
D 4 HOH A 4 304 43 HOH HOH . 
D 4 HOH A 5 305 50 HOH HOH . 
D 4 HOH A 6 306 29 HOH HOH . 
D 4 HOH A 7 307 35 HOH HOH . 
D 4 HOH A 8 308 14 HOH HOH . 
D 4 HOH A 9 309 5 HOH HOH . 
D 4 HOH A 10 310 49 HOH HOH . 
D 4 HOH A 11 311 20 HOH HOH . 
D 4 HOH A 12 312 15 HOH HOH . 
D 4 HOH A 13 313 10 HOH HOH . 
D 4 HOH A 14 314 47 HOH HOH . 
D 4 HOH A 15 315 7 HOH HOH . 
D 4 HOH A 16 316 46 HOH HOH . 
D 4 HOH A 17 317 34 HOH HOH . 
D 4 HOH A 18 318 12 HOH HOH . 
D 4 HOH A 19 319 48 HOH HOH . 
D 4 HOH A 20 320 4 HOH HOH . 
D 4 HOH A 21 321 2 HOH HOH . 
D 4 HOH A 22 322 28 HOH HOH . 
D 4 HOH A 23 323 44 HOH HOH . 
D 4 HOH A 24 324 19 HOH HOH . 
D 4 HOH A 25 325 30 HOH HOH . 
D 4 HOH A 26 326 21 HOH HOH . 
D 4 HOH A 27 327 3 HOH HOH . 
D 4 HOH A 28 328 6 HOH HOH . 
D 4 HOH A 29 329 11 HOH HOH . 
D 4 HOH A 30 330 22 HOH HOH . 
D 4 HOH A 31 331 9 HOH HOH . 
D 4 HOH A 32 332 51 HOH HOH . 
D 4 HOH A 33 333 8 HOH HOH . 
D 4 HOH A 34 334 18 HOH HOH . 
D 4 HOH A 35 335 39 HOH HOH . 
D 4 HOH A 36 336 37 HOH HOH . 
D 4 HOH A 37 337 1 HOH HOH . 
D 4 HOH A 38 338 17 HOH HOH . 
D 4 HOH A 39 339 42 HOH HOH . 
D 4 HOH A 40 340 27 HOH HOH . 
D 4 HOH A 41 341 23 HOH HOH . 
D 4 HOH A 42 342 40 HOH HOH . 
D 4 HOH A 43 343 16 HOH HOH . 
D 4 HOH A 44 344 31 HOH HOH . 
D 4 HOH A 45 345 45 HOH HOH . 
D 4 HOH A 46 346 41 HOH HOH . 
D 4 HOH A 47 347 38 HOH HOH . 
D 4 HOH A 48 348 33 HOH HOH . 
D 4 HOH A 49 349 26 HOH HOH . 
D 4 HOH A 50 350 32 HOH HOH . 
D 4 HOH A 51 351 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 65O . . . B 2 -2.733 -17.996 2.051 1 29.44 ? C4 65O 201 A 1 
HETATM 2 C C5 65O . . . B 2 -2.439 -18.761 0.947 1 27.2 ? C5 65O 201 A 1 
HETATM 3 C C6 65O . . . B 2 -2.358 -20.131 1.171 1 20.91 ? C6 65O 201 A 1 
HETATM 4 N N1 65O . . . B 2 -2.521 -20.66 2.361 1 20.49 ? N1 65O 201 A 1 
HETATM 5 N N3 65O . . . B 2 -2.999 -18.528 3.278 1 24.94 ? N3 65O 201 A 1 
HETATM 6 C CAA 65O . . . B 2 -1.749 -18.371 -1.608 1 30.49 ? CAA 65O 201 A 1 
HETATM 7 C CAQ 65O . . . B 2 -2.188 -17.944 -0.159 1 30.27 ? CAQ 65O 201 A 1 
HETATM 8 N NAC 65O . . . B 2 -2.064 -21.04 0.163 1 21.35 ? NAC 65O 201 A 1 
HETATM 9 C C2 65O . . . B 2 -2.84 -19.854 3.414 1 22.77 ? C2 65O 201 A 1 
HETATM 10 N NAB 65O . . . B 2 -2.992 -20.398 4.615 1 21.7 ? NAB 65O 201 A 1 
HETATM 11 S SAN 65O . . . B 2 -2.791 -16.247 1.564 1 37.02 ? SAN 65O 201 A 1 
HETATM 12 C CAS 65O . . . B 2 -2.287 -16.605 0.016 1 30.96 ? CAS 65O 201 A 1 
HETATM 13 S SAM 65O . . . B 2 -1.913 -15.236 -1.28 1 36.33 ? SAM 65O 201 A 1 
HETATM 14 C CAR 65O . . . B 2 -3.464 -14.804 -1.947 1 37.04 ? CAR 65O 201 A 1 
HETATM 15 C CAU 65O . . . B 2 -3.963 -13.479 -1.817 1 41.04 ? CAU 65O 201 A 1 
HETATM 16 C CAJ 65O . . . B 2 -3.211 -12.505 -1.147 1 40.4 ? CAJ 65O 201 A 1 
HETATM 17 C CAE 65O . . . B 2 -3.72 -11.202 -0.991 1 44.57 ? CAE 65O 201 A 1 
HETATM 18 C CAD 65O . . . B 2 -4.962 -10.847 -1.535 1 41.82 ? CAD 65O 201 A 1 
HETATM 19 C CAH 65O . . . B 2 -5.713 -11.814 -2.225 1 45.5 ? CAH 65O 201 A 1 
HETATM 20 C CAT 65O . . . B 2 -5.234 -13.139 -2.355 1 45.27 ? CAT 65O 201 A 1 
HETATM 21 C CAI 65O . . . B 2 -5.99 -14.112 -3.033 1 40.59 ? CAI 65O 201 A 1 
HETATM 22 C CAF 65O . . . B 2 -5.476 -15.414 -3.182 1 35.54 ? CAF 65O 201 A 1 
HETATM 23 C CAG 65O . . . B 2 -4.232 -15.76 -2.614 1 35.36 ? CAG 65O 201 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           23 
#