data_5HVD
#
_model_server_result.job_id            ZTFzNlHPnMZHR7-N2S8Now 
_model_server_result.datetime_utc      '2024-10-12 07:25:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5HVD 
#
_exptl.entry_id    5HVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              379.489 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEGA-10 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HVD 
_cell.length_a            109.58 
_cell.length_b            109.58 
_cell.length_c            209.71 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 109.58 109.58 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 109.58 0 0 
4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 109.58 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NA NA . A NA 301 1_555 H O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc2 B NA NA . A NA 301 1_555 H O HOH . A HOH 424 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc3 C NA NA . A NA 302 1_555 H O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc4 C NA NA . A NA 302 1_555 H O HOH . A HOH 427 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
#
_chem_comp.formula           'C18 H37 N O7' 
_chem_comp.formula_weight    379.489 
_chem_comp.id                2CV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEGA-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C12 2CV sing 87 n n 
C9 C1 2CV sing 88 n n 
C12 C15 2CV sing 89 n n 
C15 C18 2CV sing 90 n n 
C18 C21 2CV sing 91 n n 
C21 C24 2CV sing 92 n n 
C24 C27 2CV sing 93 n n 
C27 C30 2CV sing 94 n n 
C30 N33 2CV sing 95 n n 
C30 O34 2CV doub 96 n n 
N33 C35 2CV sing 97 n n 
N33 C36 2CV sing 98 n n 
C35 C60 2CV sing 99 n n 
C36 C37 2CV sing 100 n n 
C37 C40 2CV sing 101 n n 
C37 O47 2CV sing 102 n n 
C40 C41 2CV sing 103 n n 
C40 O49 2CV sing 104 n n 
C41 C42 2CV sing 105 n n 
C41 O51 2CV sing 106 n n 
C42 C43 2CV sing 107 n n 
C42 O53 2CV sing 108 n n 
C43 O44 2CV sing 109 n n 
C60 O63 2CV sing 110 n n 
C1 C0 2CV sing 111 n n 
C9 H91C 2CV sing 112 n n 
C9 H92C 2CV sing 113 n n 
C12 H121 2CV sing 114 n n 
C12 H122 2CV sing 115 n n 
C1 H11C 2CV sing 116 n n 
C1 H12C 2CV sing 117 n n 
C15 H151 2CV sing 118 n n 
C15 H152 2CV sing 119 n n 
C18 H181 2CV sing 120 n n 
C18 H182 2CV sing 121 n n 
C21 H211 2CV sing 122 n n 
C21 H212 2CV sing 123 n n 
C24 H241 2CV sing 124 n n 
C24 H242 2CV sing 125 n n 
C27 H271 2CV sing 126 n n 
C27 H272 2CV sing 127 n n 
C35 H351 2CV sing 128 n n 
C35 H352 2CV sing 129 n n 
C36 H361 2CV sing 130 n n 
C36 H362 2CV sing 131 n n 
C60 H601 2CV sing 132 n n 
C60 H602 2CV sing 133 n n 
C37 H37 2CV sing 134 n n 
C40 H40 2CV sing 135 n n 
O47 H47 2CV sing 136 n n 
C41 H41 2CV sing 137 n n 
O49 H49 2CV sing 138 n n 
C42 H42 2CV sing 139 n n 
O51 H51 2CV sing 140 n n 
C43 H431 2CV sing 141 n n 
C43 H432 2CV sing 142 n n 
O53 H53 2CV sing 143 n n 
O44 H44 2CV sing 144 n n 
O63 H63 2CV sing 145 n n 
C0 H01C 2CV sing 146 n n 
C0 H02C 2CV sing 147 n n 
C0 H03C 2CV sing 148 n n 
#
_atom_sites.entry_id                     5HVD 
_atom_sites.fract_transf_matrix[1][1]    0.009126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 301 NA NA . 
C 2 NA A 1 302 302 NA NA . 
D 2 NA A 1 303 303 NA NA . 
E 3 2CV A 1 304 401 2CV 2CV . 
F 4 12P A 1 305 501 12P 12P . 
G 5 MES A 1 306 1 MES MES . 
H 6 HOH A 1 401 110 HOH HOH . 
H 6 HOH A 2 402 54 HOH HOH . 
H 6 HOH A 3 403 101 HOH HOH . 
H 6 HOH A 4 404 3 HOH HOH . 
H 6 HOH A 5 405 51 HOH HOH . 
H 6 HOH A 6 406 7 HOH HOH . 
H 6 HOH A 7 407 95 HOH HOH . 
H 6 HOH A 8 408 8 HOH HOH . 
H 6 HOH A 9 409 17 HOH HOH . 
H 6 HOH A 10 410 11 HOH HOH . 
H 6 HOH A 11 411 108 HOH HOH . 
H 6 HOH A 12 412 9 HOH HOH . 
H 6 HOH A 13 413 2 HOH HOH . 
H 6 HOH A 14 414 106 HOH HOH . 
H 6 HOH A 15 415 96 HOH HOH . 
H 6 HOH A 16 416 6 HOH HOH . 
H 6 HOH A 17 417 36 HOH HOH . 
H 6 HOH A 18 418 28 HOH HOH . 
H 6 HOH A 19 419 65 HOH HOH . 
H 6 HOH A 20 420 22 HOH HOH . 
H 6 HOH A 21 421 5 HOH HOH . 
H 6 HOH A 22 422 21 HOH HOH . 
H 6 HOH A 23 423 1 HOH HOH . 
H 6 HOH A 24 424 75 HOH HOH . 
H 6 HOH A 25 425 32 HOH HOH . 
H 6 HOH A 26 426 94 HOH HOH . 
H 6 HOH A 27 427 74 HOH HOH . 
H 6 HOH A 28 428 97 HOH HOH . 
H 6 HOH A 29 429 78 HOH HOH . 
H 6 HOH A 30 430 13 HOH HOH . 
H 6 HOH A 31 431 55 HOH HOH . 
H 6 HOH A 32 432 23 HOH HOH . 
H 6 HOH A 33 433 15 HOH HOH . 
H 6 HOH A 34 434 85 HOH HOH . 
H 6 HOH A 35 435 89 HOH HOH . 
H 6 HOH A 36 436 86 HOH HOH . 
H 6 HOH A 37 437 67 HOH HOH . 
H 6 HOH A 38 438 31 HOH HOH . 
H 6 HOH A 39 439 25 HOH HOH . 
H 6 HOH A 40 440 88 HOH HOH . 
H 6 HOH A 41 441 98 HOH HOH . 
H 6 HOH A 42 442 10 HOH HOH . 
H 6 HOH A 43 443 60 HOH HOH . 
H 6 HOH A 44 444 46 HOH HOH . 
H 6 HOH A 45 445 12 HOH HOH . 
H 6 HOH A 46 446 70 HOH HOH . 
H 6 HOH A 47 447 20 HOH HOH . 
H 6 HOH A 48 448 29 HOH HOH . 
H 6 HOH A 49 449 16 HOH HOH . 
H 6 HOH A 50 450 72 HOH HOH . 
H 6 HOH A 51 451 83 HOH HOH . 
H 6 HOH A 52 452 99 HOH HOH . 
H 6 HOH A 53 453 49 HOH HOH . 
H 6 HOH A 54 454 27 HOH HOH . 
H 6 HOH A 55 455 69 HOH HOH . 
H 6 HOH A 56 456 39 HOH HOH . 
H 6 HOH A 57 457 14 HOH HOH . 
H 6 HOH A 58 458 56 HOH HOH . 
H 6 HOH A 59 459 37 HOH HOH . 
H 6 HOH A 60 460 30 HOH HOH . 
H 6 HOH A 61 461 81 HOH HOH . 
H 6 HOH A 62 462 18 HOH HOH . 
H 6 HOH A 63 463 58 HOH HOH . 
H 6 HOH A 64 464 4 HOH HOH . 
H 6 HOH A 65 465 40 HOH HOH . 
H 6 HOH A 66 466 79 HOH HOH . 
H 6 HOH A 67 467 33 HOH HOH . 
H 6 HOH A 68 468 38 HOH HOH . 
H 6 HOH A 69 469 104 HOH HOH . 
H 6 HOH A 70 470 63 HOH HOH . 
H 6 HOH A 71 471 92 HOH HOH . 
H 6 HOH A 72 472 43 HOH HOH . 
H 6 HOH A 73 473 19 HOH HOH . 
H 6 HOH A 74 474 47 HOH HOH . 
H 6 HOH A 75 475 77 HOH HOH . 
H 6 HOH A 76 476 84 HOH HOH . 
H 6 HOH A 77 477 109 HOH HOH . 
H 6 HOH A 78 478 87 HOH HOH . 
H 6 HOH A 79 479 105 HOH HOH . 
H 6 HOH A 80 480 24 HOH HOH . 
H 6 HOH A 81 481 41 HOH HOH . 
H 6 HOH A 82 482 76 HOH HOH . 
H 6 HOH A 83 483 35 HOH HOH . 
H 6 HOH A 84 484 102 HOH HOH . 
H 6 HOH A 85 485 107 HOH HOH . 
H 6 HOH A 86 486 93 HOH HOH . 
H 6 HOH A 87 487 34 HOH HOH . 
H 6 HOH A 88 488 42 HOH HOH . 
H 6 HOH A 89 489 103 HOH HOH . 
H 6 HOH A 90 490 44 HOH HOH . 
H 6 HOH A 91 491 66 HOH HOH . 
H 6 HOH A 92 492 26 HOH HOH . 
H 6 HOH A 93 493 111 HOH HOH . 
H 6 HOH A 94 494 68 HOH HOH . 
H 6 HOH A 95 495 53 HOH HOH . 
H 6 HOH A 96 496 91 HOH HOH . 
H 6 HOH A 97 497 71 HOH HOH . 
H 6 HOH A 98 498 52 HOH HOH . 
H 6 HOH A 99 499 48 HOH HOH . 
H 6 HOH A 100 500 45 HOH HOH . 
H 6 HOH A 101 501 62 HOH HOH . 
H 6 HOH A 102 502 64 HOH HOH . 
H 6 HOH A 103 503 61 HOH HOH . 
H 6 HOH A 104 504 59 HOH HOH . 
H 6 HOH A 105 505 90 HOH HOH . 
H 6 HOH A 106 506 50 HOH HOH . 
H 6 HOH A 107 507 82 HOH HOH . 
H 6 HOH A 108 508 57 HOH HOH . 
H 6 HOH A 109 509 73 HOH HOH . 
H 6 HOH A 110 510 80 HOH HOH . 
H 6 HOH A 111 511 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 2CV . . . E 3 71.609 49.09 20.12 1 65.03 ? C9 2CV 304 A 1 
HETATM 2 C C12 2CV . . . E 3 72.493 49.977 19.249 1 60.89 ? C12 2CV 304 A 1 
HETATM 3 C C15 2CV . . . E 3 72.548 49.557 17.793 1 58.02 ? C15 2CV 304 A 1 
HETATM 4 C C18 2CV . . . E 3 73.516 50.35 16.937 1 56.02 ? C18 2CV 304 A 1 
HETATM 5 C C21 2CV . . . E 3 73.936 49.61 15.694 1 56.99 ? C21 2CV 304 A 1 
HETATM 6 C C24 2CV . . . E 3 74.971 50.306 14.865 1 59.12 ? C24 2CV 304 A 1 
HETATM 7 C C27 2CV . . . E 3 74.603 50.357 13.385 1 65.14 ? C27 2CV 304 A 1 
HETATM 8 C C30 2CV . . . E 3 75.797 50.189 12.472 1 73.04 ? C30 2CV 304 A 1 
HETATM 9 N N33 2CV . . . E 3 75.611 50.342 11.136 1 77.54 ? N33 2CV 304 A 1 
HETATM 10 O O34 2CV . . . E 3 76.893 49.919 12.943 1 75.78 ? O34 2CV 304 A 1 
HETATM 11 C C35 2CV . . . E 3 74.312 50.697 10.54 1 74.04 ? C35 2CV 304 A 1 
HETATM 12 C C36 2CV . . . E 3 76.688 50.129 10.156 1 85.64 ? C36 2CV 304 A 1 
HETATM 13 C C37 2CV . . . E 3 77.836 51.137 10.136 1 92.53 ? C37 2CV 304 A 1 
HETATM 14 C C40 2CV . . . E 3 78.469 51.24 8.748 1 95.64 ? C40 2CV 304 A 1 
HETATM 15 O O47 2CV . . . E 3 78.858 50.743 11.055 1 94.28 ? O47 2CV 304 A 1 
HETATM 16 O O49 2CV . . . E 3 79.435 52.286 8.766 1 97.9 ? O49 2CV 304 A 1 
HETATM 17 C C60 2CV . . . E 3 73.596 49.54 9.88 1 74.31 ? C60 2CV 304 A 1 
HETATM 18 O O63 2CV . . . E 3 72.427 49.976 9.189 1 74.43 ? O63 2CV 304 A 1 
HETATM 19 C C1 2CV . . . E 3 71.393 49.642 21.527 1 71.12 ? C1 2CV 304 A 1 
HETATM 20 C C0 2CV . . . E 3 70.639 48.719 22.489 1 73.92 ? C0 2CV 304 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           350 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#