data_5HVD
#
_model_server_result.job_id            aCo2_HYpVCTEUWsKbBCVhg 
_model_server_result.datetime_utc      '2024-10-12 07:24:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":305}' 
#
_entry.id    5HVD 
#
_exptl.entry_id    5HVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              546.646 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DODECAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HVD 
_cell.length_a            109.58 
_cell.length_b            109.58 
_cell.length_c            209.71 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 109.58 109.58 0 
3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 109.58 0 0 
4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 109.58 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NA NA . A NA 301 1_555 H O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc2 B NA NA . A NA 301 1_555 H O HOH . A HOH 424 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc3 C NA NA . A NA 302 1_555 H O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc4 C NA NA . A NA 302 1_555 H O HOH . A HOH 427 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
#
_chem_comp.formula           'C24 H50 O13' 
_chem_comp.formula_weight    546.646 
_chem_comp.id                12P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DODECAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'POLYETHYLENE GLYCOL PEG400' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O37 C36 12P sing 1 n n 
O37 H37 12P sing 2 n n 
C36 C35 12P sing 3 n n 
C36 H361 12P sing 4 n n 
C36 H362 12P sing 5 n n 
C35 O34 12P sing 6 n n 
C35 H351 12P sing 7 n n 
C35 H352 12P sing 8 n n 
O34 C33 12P sing 9 n n 
C33 C32 12P sing 10 n n 
C33 H331 12P sing 11 n n 
C33 H332 12P sing 12 n n 
C32 O31 12P sing 13 n n 
C32 H321 12P sing 14 n n 
C32 H322 12P sing 15 n n 
O31 C30 12P sing 16 n n 
C30 C29 12P sing 17 n n 
C30 H301 12P sing 18 n n 
C30 H302 12P sing 19 n n 
C29 O28 12P sing 20 n n 
C29 H291 12P sing 21 n n 
C29 H292 12P sing 22 n n 
O28 C27 12P sing 23 n n 
C27 C26 12P sing 24 n n 
C27 H271 12P sing 25 n n 
C27 H272 12P sing 26 n n 
C26 O25 12P sing 27 n n 
C26 H261 12P sing 28 n n 
C26 H262 12P sing 29 n n 
O25 C24 12P sing 30 n n 
C24 C23 12P sing 31 n n 
C24 H241 12P sing 32 n n 
C24 H242 12P sing 33 n n 
C23 O22 12P sing 34 n n 
C23 H231 12P sing 35 n n 
C23 H232 12P sing 36 n n 
O22 C21 12P sing 37 n n 
C21 C20 12P sing 38 n n 
C21 H211 12P sing 39 n n 
C21 H212 12P sing 40 n n 
C20 O19 12P sing 41 n n 
C20 H201 12P sing 42 n n 
C20 H202 12P sing 43 n n 
O19 C18 12P sing 44 n n 
C18 C17 12P sing 45 n n 
C18 H181 12P sing 46 n n 
C18 H182 12P sing 47 n n 
C17 O16 12P sing 48 n n 
C17 H171 12P sing 49 n n 
C17 H172 12P sing 50 n n 
O16 C15 12P sing 51 n n 
C15 C14 12P sing 52 n n 
C15 H151 12P sing 53 n n 
C15 H152 12P sing 54 n n 
C14 O13 12P sing 55 n n 
C14 H141 12P sing 56 n n 
C14 H142 12P sing 57 n n 
O13 C12 12P sing 58 n n 
C12 C11 12P sing 59 n n 
C12 H121 12P sing 60 n n 
C12 H122 12P sing 61 n n 
C11 O10 12P sing 62 n n 
C11 H111 12P sing 63 n n 
C11 H112 12P sing 64 n n 
O10 C9 12P sing 65 n n 
C9 C8 12P sing 66 n n 
C9 H91 12P sing 67 n n 
C9 H92 12P sing 68 n n 
C8 O7 12P sing 69 n n 
C8 H81 12P sing 70 n n 
C8 H82 12P sing 71 n n 
O7 C6 12P sing 72 n n 
C6 C5 12P sing 73 n n 
C6 H61 12P sing 74 n n 
C6 H62 12P sing 75 n n 
C5 O4 12P sing 76 n n 
C5 H51 12P sing 77 n n 
C5 H52 12P sing 78 n n 
O4 C3 12P sing 79 n n 
C3 C2 12P sing 80 n n 
C3 H31 12P sing 81 n n 
C3 H32 12P sing 82 n n 
C2 O1 12P sing 83 n n 
C2 H21 12P sing 84 n n 
C2 H22 12P sing 85 n n 
O1 HO1 12P sing 86 n n 
#
_atom_sites.entry_id                     5HVD 
_atom_sites.fract_transf_matrix[1][1]    0.009126 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009126 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004768 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 301 NA NA . 
C 2 NA A 1 302 302 NA NA . 
D 2 NA A 1 303 303 NA NA . 
E 3 2CV A 1 304 401 2CV 2CV . 
F 4 12P A 1 305 501 12P 12P . 
G 5 MES A 1 306 1 MES MES . 
H 6 HOH A 1 401 110 HOH HOH . 
H 6 HOH A 2 402 54 HOH HOH . 
H 6 HOH A 3 403 101 HOH HOH . 
H 6 HOH A 4 404 3 HOH HOH . 
H 6 HOH A 5 405 51 HOH HOH . 
H 6 HOH A 6 406 7 HOH HOH . 
H 6 HOH A 7 407 95 HOH HOH . 
H 6 HOH A 8 408 8 HOH HOH . 
H 6 HOH A 9 409 17 HOH HOH . 
H 6 HOH A 10 410 11 HOH HOH . 
H 6 HOH A 11 411 108 HOH HOH . 
H 6 HOH A 12 412 9 HOH HOH . 
H 6 HOH A 13 413 2 HOH HOH . 
H 6 HOH A 14 414 106 HOH HOH . 
H 6 HOH A 15 415 96 HOH HOH . 
H 6 HOH A 16 416 6 HOH HOH . 
H 6 HOH A 17 417 36 HOH HOH . 
H 6 HOH A 18 418 28 HOH HOH . 
H 6 HOH A 19 419 65 HOH HOH . 
H 6 HOH A 20 420 22 HOH HOH . 
H 6 HOH A 21 421 5 HOH HOH . 
H 6 HOH A 22 422 21 HOH HOH . 
H 6 HOH A 23 423 1 HOH HOH . 
H 6 HOH A 24 424 75 HOH HOH . 
H 6 HOH A 25 425 32 HOH HOH . 
H 6 HOH A 26 426 94 HOH HOH . 
H 6 HOH A 27 427 74 HOH HOH . 
H 6 HOH A 28 428 97 HOH HOH . 
H 6 HOH A 29 429 78 HOH HOH . 
H 6 HOH A 30 430 13 HOH HOH . 
H 6 HOH A 31 431 55 HOH HOH . 
H 6 HOH A 32 432 23 HOH HOH . 
H 6 HOH A 33 433 15 HOH HOH . 
H 6 HOH A 34 434 85 HOH HOH . 
H 6 HOH A 35 435 89 HOH HOH . 
H 6 HOH A 36 436 86 HOH HOH . 
H 6 HOH A 37 437 67 HOH HOH . 
H 6 HOH A 38 438 31 HOH HOH . 
H 6 HOH A 39 439 25 HOH HOH . 
H 6 HOH A 40 440 88 HOH HOH . 
H 6 HOH A 41 441 98 HOH HOH . 
H 6 HOH A 42 442 10 HOH HOH . 
H 6 HOH A 43 443 60 HOH HOH . 
H 6 HOH A 44 444 46 HOH HOH . 
H 6 HOH A 45 445 12 HOH HOH . 
H 6 HOH A 46 446 70 HOH HOH . 
H 6 HOH A 47 447 20 HOH HOH . 
H 6 HOH A 48 448 29 HOH HOH . 
H 6 HOH A 49 449 16 HOH HOH . 
H 6 HOH A 50 450 72 HOH HOH . 
H 6 HOH A 51 451 83 HOH HOH . 
H 6 HOH A 52 452 99 HOH HOH . 
H 6 HOH A 53 453 49 HOH HOH . 
H 6 HOH A 54 454 27 HOH HOH . 
H 6 HOH A 55 455 69 HOH HOH . 
H 6 HOH A 56 456 39 HOH HOH . 
H 6 HOH A 57 457 14 HOH HOH . 
H 6 HOH A 58 458 56 HOH HOH . 
H 6 HOH A 59 459 37 HOH HOH . 
H 6 HOH A 60 460 30 HOH HOH . 
H 6 HOH A 61 461 81 HOH HOH . 
H 6 HOH A 62 462 18 HOH HOH . 
H 6 HOH A 63 463 58 HOH HOH . 
H 6 HOH A 64 464 4 HOH HOH . 
H 6 HOH A 65 465 40 HOH HOH . 
H 6 HOH A 66 466 79 HOH HOH . 
H 6 HOH A 67 467 33 HOH HOH . 
H 6 HOH A 68 468 38 HOH HOH . 
H 6 HOH A 69 469 104 HOH HOH . 
H 6 HOH A 70 470 63 HOH HOH . 
H 6 HOH A 71 471 92 HOH HOH . 
H 6 HOH A 72 472 43 HOH HOH . 
H 6 HOH A 73 473 19 HOH HOH . 
H 6 HOH A 74 474 47 HOH HOH . 
H 6 HOH A 75 475 77 HOH HOH . 
H 6 HOH A 76 476 84 HOH HOH . 
H 6 HOH A 77 477 109 HOH HOH . 
H 6 HOH A 78 478 87 HOH HOH . 
H 6 HOH A 79 479 105 HOH HOH . 
H 6 HOH A 80 480 24 HOH HOH . 
H 6 HOH A 81 481 41 HOH HOH . 
H 6 HOH A 82 482 76 HOH HOH . 
H 6 HOH A 83 483 35 HOH HOH . 
H 6 HOH A 84 484 102 HOH HOH . 
H 6 HOH A 85 485 107 HOH HOH . 
H 6 HOH A 86 486 93 HOH HOH . 
H 6 HOH A 87 487 34 HOH HOH . 
H 6 HOH A 88 488 42 HOH HOH . 
H 6 HOH A 89 489 103 HOH HOH . 
H 6 HOH A 90 490 44 HOH HOH . 
H 6 HOH A 91 491 66 HOH HOH . 
H 6 HOH A 92 492 26 HOH HOH . 
H 6 HOH A 93 493 111 HOH HOH . 
H 6 HOH A 94 494 68 HOH HOH . 
H 6 HOH A 95 495 53 HOH HOH . 
H 6 HOH A 96 496 91 HOH HOH . 
H 6 HOH A 97 497 71 HOH HOH . 
H 6 HOH A 98 498 52 HOH HOH . 
H 6 HOH A 99 499 48 HOH HOH . 
H 6 HOH A 100 500 45 HOH HOH . 
H 6 HOH A 101 501 62 HOH HOH . 
H 6 HOH A 102 502 64 HOH HOH . 
H 6 HOH A 103 503 61 HOH HOH . 
H 6 HOH A 104 504 59 HOH HOH . 
H 6 HOH A 105 505 90 HOH HOH . 
H 6 HOH A 106 506 50 HOH HOH . 
H 6 HOH A 107 507 82 HOH HOH . 
H 6 HOH A 108 508 57 HOH HOH . 
H 6 HOH A 109 509 73 HOH HOH . 
H 6 HOH A 110 510 80 HOH HOH . 
H 6 HOH A 111 511 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O37 12P . . . F 4 69.88 57.566 29.826 1 94.32 ? O37 12P 305 A 1 
HETATM 2 C C36 12P . . . F 4 69.957 58.545 30.86 1 97.7 ? C36 12P 305 A 1 
HETATM 3 C C35 12P . . . F 4 71.38 58.832 31.259 1 100.38 ? C35 12P 305 A 1 
HETATM 4 O O34 12P . . . F 4 71.449 59.945 32.155 1 101.47 ? O34 12P 305 A 1 
HETATM 5 C C33 12P . . . F 4 72.579 60.786 31.92 1 102.45 ? C33 12P 305 A 1 
HETATM 6 C C32 12P . . . F 4 72.158 62.204 31.652 1 103.92 ? C32 12P 305 A 1 
HETATM 7 O O31 12P . . . F 4 73.283 62.995 31.28 1 105.14 ? O31 12P 305 A 1 
HETATM 8 C C30 12P . . . F 4 72.984 64.018 30.334 1 106.12 ? C30 12P 305 A 1 
HETATM 9 C C29 12P . . . F 4 74.092 64.118 29.324 1 107.37 ? C29 12P 305 A 1 
HETATM 10 O O28 12P . . . F 4 73.889 65.227 28.449 1 108.16 ? O28 12P 305 A 1 
HETATM 11 C C27 12P . . . F 4 74.278 64.973 27.095 1 106.54 ? C27 12P 305 A 1 
HETATM 12 C C26 12P . . . F 4 73.912 66.142 26.216 1 104.19 ? C26 12P 305 A 1 
HETATM 13 O O25 12P . . . F 4 74.231 65.895 24.847 1 101.34 ? O25 12P 305 A 1 
HETATM 14 C C24 12P . . . F 4 73.577 66.793 23.957 1 100.3 ? C24 12P 305 A 1 
HETATM 15 C C23 12P . . . F 4 73.7 66.338 22.532 1 101.22 ? C23 12P 305 A 1 
HETATM 16 O O22 12P . . . F 4 72.831 65.241 22.264 1 101.91 ? O22 12P 305 A 1 
HETATM 17 C C21 12P . . . F 4 72.72 64.928 20.88 1 100.08 ? C21 12P 305 A 1 
HETATM 18 C C20 12P . . . F 4 73.171 63.526 20.629 1 98.77 ? C20 12P 305 A 1 
HETATM 19 O O19 12P . . . F 4 74.572 63.437 20.841 1 99.46 ? O19 12P 305 A 1 
HETATM 20 C C18 12P . . . F 4 75.104 62.137 20.601 1 98.38 ? C18 12P 305 A 1 
HETATM 21 C C17 12P . . . F 4 76.604 62.173 20.495 1 95.04 ? C17 12P 305 A 1 
HETATM 22 O O16 12P . . . F 4 77.009 62.926 19.358 1 91.78 ? O16 12P 305 A 1 
HETATM 23 C C15 12P . . . F 4 77.89 62.216 18.501 1 89.75 ? C15 12P 305 A 1 
HETATM 24 C C14 12P . . . F 4 78.097 62.985 17.246 1 89.43 ? C14 12P 305 A 1 
HETATM 25 O O13 12P . . . F 4 78.673 62.149 16.257 1 91.01 ? O13 12P 305 A 1 
HETATM 26 C C12 12P . . . F 4 78.426 62.603 14.932 1 92.08 ? C12 12P 305 A 1 
HETATM 27 C C11 12P . . . F 4 78.338 61.446 13.986 1 94.06 ? C11 12P 305 A 1 
HETATM 28 O O10 12P . . . F 4 78.357 61.927 12.644 1 96.1 ? O10 12P 305 A 1 
HETATM 29 C C9 12P . . . F 4 77.47 61.233 11.767 1 93.76 ? C9 12P 305 A 1 
HETATM 30 C C8 12P . . . F 4 77.395 61.911 10.436 1 91.34 ? C8 12P 305 A 1 
HETATM 31 O O7 12P . . . F 4 78.694 62.004 9.862 1 91.82 ? O7 12P 305 A 1 
HETATM 32 C C6 12P . . . F 4 78.742 61.707 8.462 1 89.27 ? C6 12P 305 A 1 
HETATM 33 C C5 12P . . . F 4 79.458 60.392 8.181 1 82.99 ? C5 12P 305 A 1 
HETATM 34 O O4 12P . . . F 4 78.772 59.268 8.705 1 76.4 ? O4 12P 305 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           34 
#