data_5HVJ
#
_model_server_result.job_id            e8KDb1ZBQ6J-oSV5coKPhQ 
_model_server_result.datetime_utc      '2024-11-22 23:05:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    5HVJ 
#
_exptl.entry_id    5HVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.28 
_cell.angle_gamma         90 
_cell.entry_id            5HVJ 
_cell.length_a            54.987 
_cell.length_b            59.573 
_cell.length_c            98.276 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     5HVJ 
_atom_sites.fract_transf_matrix[1][1]    0.018186 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003627 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016786 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 1000 1000 ANP ANP . 
D 3 HOH A 1 1101 34 HOH HOH . 
D 3 HOH A 2 1102 5 HOH HOH . 
D 3 HOH A 3 1103 31 HOH HOH . 
D 3 HOH A 4 1104 32 HOH HOH . 
D 3 HOH A 5 1105 19 HOH HOH . 
D 3 HOH A 6 1106 22 HOH HOH . 
D 3 HOH A 7 1107 3 HOH HOH . 
D 3 HOH A 8 1108 33 HOH HOH . 
D 3 HOH A 9 1109 36 HOH HOH . 
D 3 HOH A 10 1110 23 HOH HOH . 
D 3 HOH A 11 1111 2 HOH HOH . 
D 3 HOH A 12 1112 38 HOH HOH . 
D 3 HOH A 13 1113 27 HOH HOH . 
D 3 HOH A 14 1114 54 HOH HOH . 
D 3 HOH A 15 1115 6 HOH HOH . 
D 3 HOH A 16 1116 20 HOH HOH . 
D 3 HOH A 17 1117 10 HOH HOH . 
D 3 HOH A 18 1118 28 HOH HOH . 
D 3 HOH A 19 1119 13 HOH HOH . 
D 3 HOH A 20 1120 14 HOH HOH . 
D 3 HOH A 21 1121 60 HOH HOH . 
D 3 HOH A 22 1122 49 HOH HOH . 
D 3 HOH A 23 1123 58 HOH HOH . 
D 3 HOH A 24 1124 18 HOH HOH . 
D 3 HOH A 25 1125 24 HOH HOH . 
D 3 HOH A 26 1126 35 HOH HOH . 
D 3 HOH A 27 1127 47 HOH HOH . 
D 3 HOH A 28 1128 29 HOH HOH . 
D 3 HOH A 29 1129 55 HOH HOH . 
D 3 HOH A 30 1130 16 HOH HOH . 
D 3 HOH A 31 1131 45 HOH HOH . 
D 3 HOH A 32 1132 21 HOH HOH . 
D 3 HOH A 33 1133 25 HOH HOH . 
D 3 HOH A 34 1134 43 HOH HOH . 
D 3 HOH A 35 1135 59 HOH HOH . 
D 3 HOH A 36 1136 30 HOH HOH . 
D 3 HOH A 37 1137 57 HOH HOH . 
D 3 HOH A 38 1138 65 HOH HOH . 
D 3 HOH A 39 1139 64 HOH HOH . 
D 3 HOH A 40 1140 68 HOH HOH . 
E 3 HOH B 1 701 67 HOH HOH . 
E 3 HOH B 2 702 63 HOH HOH . 
E 3 HOH B 3 703 48 HOH HOH . 
E 3 HOH B 4 704 51 HOH HOH . 
E 3 HOH B 5 705 53 HOH HOH . 
E 3 HOH B 6 706 4 HOH HOH . 
E 3 HOH B 7 707 11 HOH HOH . 
E 3 HOH B 8 708 61 HOH HOH . 
E 3 HOH B 9 709 52 HOH HOH . 
E 3 HOH B 10 710 44 HOH HOH . 
E 3 HOH B 11 711 70 HOH HOH . 
E 3 HOH B 12 712 8 HOH HOH . 
E 3 HOH B 13 713 12 HOH HOH . 
E 3 HOH B 14 714 26 HOH HOH . 
E 3 HOH B 15 715 42 HOH HOH . 
E 3 HOH B 16 716 1 HOH HOH . 
E 3 HOH B 17 717 40 HOH HOH . 
E 3 HOH B 18 718 7 HOH HOH . 
E 3 HOH B 19 719 62 HOH HOH . 
E 3 HOH B 20 720 37 HOH HOH . 
E 3 HOH B 21 721 56 HOH HOH . 
E 3 HOH B 22 722 17 HOH HOH . 
E 3 HOH B 23 723 39 HOH HOH . 
E 3 HOH B 24 724 41 HOH HOH . 
E 3 HOH B 25 725 9 HOH HOH . 
E 3 HOH B 26 726 46 HOH HOH . 
E 3 HOH B 27 727 15 HOH HOH . 
E 3 HOH B 28 728 69 HOH HOH . 
E 3 HOH B 29 729 66 HOH HOH . 
E 3 HOH B 30 730 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ANP . . . C 2 2.764 11.897 -5.984 1 121.04 ? O5' ANP 1000 A 1 
HETATM 2 C C5' ANP . . . C 2 2.542 11.143 -7.171 1 120.02 ? C5' ANP 1000 A 1 
HETATM 3 C C4' ANP . . . C 2 2.909 11.924 -8.411 0.69 123.31 ? C4' ANP 1000 A 1 
HETATM 4 O O4' ANP . . . C 2 3.535 11.02 -9.359 1 123.29 ? O4' ANP 1000 A 1 
HETATM 5 C C3' ANP . . . C 2 1.738 12.556 -9.145 0.39 127.49 ? C3' ANP 1000 A 1 
HETATM 6 O O3' ANP . . . C 2 2.178 13.729 -9.832 1 131.19 ? O3' ANP 1000 A 1 
HETATM 7 C C2' ANP . . . C 2 1.359 11.481 -10.159 0.41 125.93 ? C2' ANP 1000 A 1 
HETATM 8 O O2' ANP . . . C 2 0.677 11.963 -11.297 1 122.77 ? O2' ANP 1000 A 1 
HETATM 9 C C1' ANP . . . C 2 2.726 10.895 -10.518 1 124.92 ? C1' ANP 1000 A 1 
HETATM 10 N N9 ANP . . . C 2 2.684 9.476 -10.882 1 120.44 ? N9 ANP 1000 A 1 
HETATM 11 C C8 ANP . . . C 2 2.322 8.425 -10.083 1 117.12 ? C8 ANP 1000 A 1 
HETATM 12 N N7 ANP . . . C 2 2.375 7.251 -10.679 1 113.98 ? N7 ANP 1000 A 1 
HETATM 13 C C5 ANP . . . C 2 2.818 7.555 -11.956 1 109.68 ? C5 ANP 1000 A 1 
HETATM 14 C C6 ANP . . . C 2 3.089 6.751 -13.083 1 93.7 ? C6 ANP 1000 A 1 
HETATM 15 N N6 ANP . . . C 2 2.953 5.423 -13.101 1 74.2 ? N6 ANP 1000 A 1 
HETATM 16 N N1 ANP . . . C 2 3.517 7.375 -14.205 1 95.16 ? N1 ANP 1000 A 1 
HETATM 17 C C2 ANP . . . C 2 3.658 8.704 -14.195 1 101.78 ? C2 ANP 1000 A 1 
HETATM 18 N N3 ANP . . . C 2 3.434 9.56 -13.198 1 106.84 ? N3 ANP 1000 A 1 
HETATM 19 C C4 ANP . . . C 2 3.016 8.92 -12.099 1 112.68 ? C4 ANP 1000 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#