data_5HVN # _model_server_result.job_id 4W4vCtUpKU1ffIwyif71GA _model_server_result.datetime_utc '2024-11-05 01:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5HVN # _exptl.entry_id 5HVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HVN _cell.length_a 178.978 _cell.length_b 178.978 _cell.length_c 96.219 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -48.1095 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 5HVN _atom_sites.fract_transf_matrix[1][1] 0.005587 _atom_sites.fract_transf_matrix[1][2] 0.003226 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006452 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 401 1 NAD NAD . C 3 CL A 1 402 2 CL CL . D 4 HOH A 1 501 7 HOH HOH . D 4 HOH A 2 502 29 HOH HOH . D 4 HOH A 3 503 4 HOH HOH . D 4 HOH A 4 504 6 HOH HOH . D 4 HOH A 5 505 58 HOH HOH . D 4 HOH A 6 506 26 HOH HOH . D 4 HOH A 7 507 16 HOH HOH . D 4 HOH A 8 508 31 HOH HOH . D 4 HOH A 9 509 48 HOH HOH . D 4 HOH A 10 510 49 HOH HOH . D 4 HOH A 11 511 57 HOH HOH . D 4 HOH A 12 512 17 HOH HOH . D 4 HOH A 13 513 37 HOH HOH . D 4 HOH A 14 514 52 HOH HOH . D 4 HOH A 15 515 50 HOH HOH . D 4 HOH A 16 516 15 HOH HOH . D 4 HOH A 17 517 42 HOH HOH . D 4 HOH A 18 518 41 HOH HOH . D 4 HOH A 19 519 5 HOH HOH . D 4 HOH A 20 520 12 HOH HOH . D 4 HOH A 21 521 45 HOH HOH . D 4 HOH A 22 522 20 HOH HOH . D 4 HOH A 23 523 13 HOH HOH . D 4 HOH A 24 524 33 HOH HOH . D 4 HOH A 25 525 9 HOH HOH . D 4 HOH A 26 526 53 HOH HOH . D 4 HOH A 27 527 32 HOH HOH . D 4 HOH A 28 528 3 HOH HOH . D 4 HOH A 29 529 43 HOH HOH . D 4 HOH A 30 530 8 HOH HOH . D 4 HOH A 31 531 11 HOH HOH . D 4 HOH A 32 532 21 HOH HOH . D 4 HOH A 33 533 51 HOH HOH . D 4 HOH A 34 534 10 HOH HOH . D 4 HOH A 35 535 38 HOH HOH . D 4 HOH A 36 536 14 HOH HOH . D 4 HOH A 37 537 27 HOH HOH . D 4 HOH A 38 538 28 HOH HOH . D 4 HOH A 39 539 30 HOH HOH . D 4 HOH A 40 540 24 HOH HOH . D 4 HOH A 41 541 23 HOH HOH . D 4 HOH A 42 542 25 HOH HOH . D 4 HOH A 43 543 56 HOH HOH . D 4 HOH A 44 544 22 HOH HOH . D 4 HOH A 45 545 39 HOH HOH . D 4 HOH A 46 546 36 HOH HOH . D 4 HOH A 47 547 54 HOH HOH . D 4 HOH A 48 548 40 HOH HOH . D 4 HOH A 49 549 47 HOH HOH . D 4 HOH A 50 550 18 HOH HOH . D 4 HOH A 51 551 46 HOH HOH . D 4 HOH A 52 552 55 HOH HOH . D 4 HOH A 53 553 35 HOH HOH . D 4 HOH A 54 554 19 HOH HOH . D 4 HOH A 55 555 34 HOH HOH . D 4 HOH A 56 556 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -58.546 -57.267 -19.601 1 68.76 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . B 2 -58.428 -55.857 -19.062 1 73 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . B 2 -59.86 -57.71 -20.194 1 62.79 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . B 2 -58.203 -58.353 -18.466 1 61.03 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . B 2 -58.288 -59.729 -18.789 1 59.93 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . B 2 -58.941 -60.589 -17.715 1 63.68 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . B 2 -58.114 -60.706 -16.568 1 68.03 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . B 2 -60.266 -60.075 -17.208 1 71.36 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . B 2 -61.137 -61.219 -17.195 1 77.02 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . B 2 -59.982 -59.549 -15.802 1 69.84 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . B 2 -61.106 -59.699 -14.931 1 74.25 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . B 2 -58.87 -60.47 -15.368 1 68.74 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . B 2 -57.837 -59.976 -14.448 1 65.64 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . B 2 -57.184 -58.809 -14.51 1 67.34 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . B 2 -56.239 -58.736 -13.539 1 66.16 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . B 2 -56.273 -59.887 -12.861 1 61.71 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . B 2 -55.541 -60.468 -11.724 1 60.76 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . B 2 -54.56 -59.77 -11.106 1 65.86 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . B 2 -55.893 -61.706 -11.318 1 58.73 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . B 2 -56.87 -62.397 -11.932 1 61.53 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . B 2 -57.574 -61.931 -12.972 1 64.04 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . B 2 -57.321 -60.702 -13.469 1 61.99 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . B 2 -57.384 -57.484 -20.685 1 68.03 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . B 2 -55.924 -56.808 -20.663 1 68.32 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . B 2 -54.961 -57.818 -21.229 1 85.83 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . B 2 -55.622 -56.229 -19.311 1 82.97 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . B 2 -56.049 -55.605 -21.713 1 67.29 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . B 2 -57.013 -55.65 -22.761 1 71.61 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . B 2 -57.537 -54.249 -23.036 1 71.17 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . B 2 -56.517 -53.278 -22.782 1 72.33 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . B 2 -57.949 -54.083 -24.486 1 72.11 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . B 2 -59.311 -53.665 -24.519 1 70.86 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . B 2 -57.054 -52.992 -25.042 1 74.39 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . B 2 -57.773 -52.084 -25.874 1 86.53 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . B 2 -56.518 -52.287 -23.807 1 74.32 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . B 2 -55.18 -51.72 -24.009 1 75.31 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . B 2 -55.032 -50.393 -23.873 1 82.04 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . B 2 -53.79 -49.777 -24.05 1 85.04 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . B 2 -53.659 -48.292 -23.893 1 80.66 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . B 2 -52.555 -47.793 -23.777 1 96.89 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . B 2 -54.759 -47.541 -23.88 1 97.39 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . B 2 -52.681 -50.562 -24.375 1 94.32 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . B 2 -52.854 -51.94 -24.511 1 90.84 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . B 2 -54.122 -52.494 -24.318 1 81.51 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #