data_5HVT # _model_server_result.job_id pQGw6iwb2N2II7QNH3VnFA _model_server_result.datetime_utc '2024-11-19 08:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":205}' # _entry.id 5HVT # _exptl.entry_id 5HVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HVT _cell.length_a 96.023 _cell.length_b 96.023 _cell.length_c 104.039 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 N N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5HVT _atom_sites.fract_transf_matrix[1][1] 0.010414 _atom_sites.fract_transf_matrix[1][2] 0.006013 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 201 115 SO4 SO4 . E 3 NVS A 1 202 117 NVS NVS . F 2 SO4 A 1 203 123 SO4 SO4 . G 4 GOL A 1 204 132 GOL GOL . H 4 GOL A 1 205 133 GOL GOL . I 5 IPA A 1 206 142 IPA IPA . J 2 SO4 B 1 201 115 SO4 SO4 . K 3 NVS B 1 202 116 NVS NVS . L 2 SO4 B 1 203 121 SO4 SO4 . M 2 SO4 B 1 204 122 SO4 SO4 . N 4 GOL B 1 205 131 GOL GOL . O 5 IPA B 1 206 145 IPA IPA . P 2 SO4 C 1 201 115 SO4 SO4 . Q 3 NVS C 1 202 118 NVS NVS . R 5 IPA C 1 203 144 IPA IPA . S 6 HOH A 1 301 206 HOH HOH . S 6 HOH A 2 302 277 HOH HOH . S 6 HOH A 3 303 137 HOH HOH . S 6 HOH A 4 304 144 HOH HOH . S 6 HOH A 5 305 201 HOH HOH . S 6 HOH A 6 306 191 HOH HOH . S 6 HOH A 7 307 247 HOH HOH . S 6 HOH A 8 308 152 HOH HOH . S 6 HOH A 9 309 184 HOH HOH . S 6 HOH A 10 310 211 HOH HOH . S 6 HOH A 11 311 13 HOH HOH . S 6 HOH A 12 312 216 HOH HOH . S 6 HOH A 13 313 182 HOH HOH . S 6 HOH A 14 314 123 HOH HOH . S 6 HOH A 15 315 255 HOH HOH . S 6 HOH A 16 316 108 HOH HOH . S 6 HOH A 17 317 45 HOH HOH . S 6 HOH A 18 318 83 HOH HOH . S 6 HOH A 19 319 102 HOH HOH . S 6 HOH A 20 320 100 HOH HOH . S 6 HOH A 21 321 121 HOH HOH . S 6 HOH A 22 322 194 HOH HOH . S 6 HOH A 23 323 82 HOH HOH . S 6 HOH A 24 324 290 HOH HOH . S 6 HOH A 25 325 90 HOH HOH . S 6 HOH A 26 326 178 HOH HOH . S 6 HOH A 27 327 36 HOH HOH . S 6 HOH A 28 328 119 HOH HOH . S 6 HOH A 29 329 78 HOH HOH . S 6 HOH A 30 330 14 HOH HOH . S 6 HOH A 31 331 11 HOH HOH . S 6 HOH A 32 332 236 HOH HOH . S 6 HOH A 33 333 24 HOH HOH . S 6 HOH A 34 334 222 HOH HOH . S 6 HOH A 35 335 88 HOH HOH . S 6 HOH A 36 336 212 HOH HOH . S 6 HOH A 37 337 75 HOH HOH . S 6 HOH A 38 338 163 HOH HOH . S 6 HOH A 39 339 274 HOH HOH . S 6 HOH A 40 340 106 HOH HOH . S 6 HOH A 41 341 1 HOH HOH . S 6 HOH A 42 342 111 HOH HOH . S 6 HOH A 43 343 228 HOH HOH . S 6 HOH A 44 344 26 HOH HOH . S 6 HOH A 45 345 38 HOH HOH . S 6 HOH A 46 346 4 HOH HOH . S 6 HOH A 47 347 73 HOH HOH . S 6 HOH A 48 348 213 HOH HOH . S 6 HOH A 49 349 138 HOH HOH . S 6 HOH A 50 350 47 HOH HOH . S 6 HOH A 51 351 164 HOH HOH . S 6 HOH A 52 352 37 HOH HOH . S 6 HOH A 53 353 63 HOH HOH . S 6 HOH A 54 354 53 HOH HOH . S 6 HOH A 55 355 283 HOH HOH . S 6 HOH A 56 356 80 HOH HOH . S 6 HOH A 57 357 49 HOH HOH . S 6 HOH A 58 358 58 HOH HOH . S 6 HOH A 59 359 169 HOH HOH . S 6 HOH A 60 360 286 HOH HOH . S 6 HOH A 61 361 71 HOH HOH . S 6 HOH A 62 362 23 HOH HOH . S 6 HOH A 63 363 132 HOH HOH . S 6 HOH A 64 364 284 HOH HOH . S 6 HOH A 65 365 50 HOH HOH . S 6 HOH A 66 366 162 HOH HOH . S 6 HOH A 67 367 246 HOH HOH . S 6 HOH A 68 368 35 HOH HOH . S 6 HOH A 69 369 224 HOH HOH . S 6 HOH A 70 370 10 HOH HOH . S 6 HOH A 71 371 159 HOH HOH . S 6 HOH A 72 372 257 HOH HOH . S 6 HOH A 73 373 98 HOH HOH . S 6 HOH A 74 374 280 HOH HOH . S 6 HOH A 75 375 12 HOH HOH . S 6 HOH A 76 376 105 HOH HOH . S 6 HOH A 77 377 151 HOH HOH . S 6 HOH A 78 378 55 HOH HOH . S 6 HOH A 79 379 165 HOH HOH . S 6 HOH A 80 380 239 HOH HOH . S 6 HOH A 81 381 181 HOH HOH . S 6 HOH A 82 382 263 HOH HOH . S 6 HOH A 83 383 202 HOH HOH . S 6 HOH A 84 384 160 HOH HOH . S 6 HOH A 85 385 57 HOH HOH . S 6 HOH A 86 386 109 HOH HOH . S 6 HOH A 87 387 173 HOH HOH . S 6 HOH A 88 388 141 HOH HOH . S 6 HOH A 89 389 134 HOH HOH . S 6 HOH A 90 390 118 HOH HOH . S 6 HOH A 91 391 279 HOH HOH . S 6 HOH A 92 392 285 HOH HOH . S 6 HOH A 93 393 289 HOH HOH . S 6 HOH A 94 394 161 HOH HOH . S 6 HOH A 95 395 60 HOH HOH . S 6 HOH A 96 396 248 HOH HOH . S 6 HOH A 97 397 265 HOH HOH . S 6 HOH A 98 398 267 HOH HOH . S 6 HOH A 99 399 89 HOH HOH . S 6 HOH A 100 400 166 HOH HOH . S 6 HOH A 101 401 254 HOH HOH . S 6 HOH A 102 402 218 HOH HOH . S 6 HOH A 103 403 273 HOH HOH . S 6 HOH A 104 404 172 HOH HOH . S 6 HOH A 105 405 171 HOH HOH . S 6 HOH A 106 406 140 HOH HOH . T 6 HOH B 1 301 229 HOH HOH . T 6 HOH B 2 302 244 HOH HOH . T 6 HOH B 3 303 116 HOH HOH . T 6 HOH B 4 304 193 HOH HOH . T 6 HOH B 5 305 233 HOH HOH . T 6 HOH B 6 306 196 HOH HOH . T 6 HOH B 7 307 220 HOH HOH . T 6 HOH B 8 308 198 HOH HOH . T 6 HOH B 9 309 180 HOH HOH . T 6 HOH B 10 310 65 HOH HOH . T 6 HOH B 11 311 135 HOH HOH . T 6 HOH B 12 312 150 HOH HOH . T 6 HOH B 13 313 186 HOH HOH . T 6 HOH B 14 314 276 HOH HOH . T 6 HOH B 15 315 185 HOH HOH . T 6 HOH B 16 316 192 HOH HOH . T 6 HOH B 17 317 252 HOH HOH . T 6 HOH B 18 318 94 HOH HOH . T 6 HOH B 19 319 281 HOH HOH . T 6 HOH B 20 320 17 HOH HOH . T 6 HOH B 21 321 130 HOH HOH . T 6 HOH B 22 322 72 HOH HOH . T 6 HOH B 23 323 291 HOH HOH . T 6 HOH B 24 324 29 HOH HOH . T 6 HOH B 25 325 214 HOH HOH . T 6 HOH B 26 326 199 HOH HOH . T 6 HOH B 27 327 217 HOH HOH . T 6 HOH B 28 328 43 HOH HOH . T 6 HOH B 29 329 99 HOH HOH . T 6 HOH B 30 330 19 HOH HOH . T 6 HOH B 31 331 139 HOH HOH . T 6 HOH B 32 332 74 HOH HOH . T 6 HOH B 33 333 76 HOH HOH . T 6 HOH B 34 334 237 HOH HOH . T 6 HOH B 35 335 52 HOH HOH . T 6 HOH B 36 336 7 HOH HOH . T 6 HOH B 37 337 95 HOH HOH . T 6 HOH B 38 338 91 HOH HOH . T 6 HOH B 39 339 21 HOH HOH . T 6 HOH B 40 340 64 HOH HOH . T 6 HOH B 41 341 15 HOH HOH . T 6 HOH B 42 342 33 HOH HOH . T 6 HOH B 43 343 219 HOH HOH . T 6 HOH B 44 344 16 HOH HOH . T 6 HOH B 45 345 84 HOH HOH . T 6 HOH B 46 346 147 HOH HOH . T 6 HOH B 47 347 2 HOH HOH . T 6 HOH B 48 348 54 HOH HOH . T 6 HOH B 49 349 59 HOH HOH . T 6 HOH B 50 350 231 HOH HOH . T 6 HOH B 51 351 79 HOH HOH . T 6 HOH B 52 352 31 HOH HOH . T 6 HOH B 53 353 48 HOH HOH . T 6 HOH B 54 354 96 HOH HOH . T 6 HOH B 55 355 107 HOH HOH . T 6 HOH B 56 356 28 HOH HOH . T 6 HOH B 57 357 87 HOH HOH . T 6 HOH B 58 358 200 HOH HOH . T 6 HOH B 59 359 221 HOH HOH . T 6 HOH B 60 360 250 HOH HOH . T 6 HOH B 61 361 101 HOH HOH . T 6 HOH B 62 362 69 HOH HOH . T 6 HOH B 63 363 183 HOH HOH . T 6 HOH B 64 364 146 HOH HOH . T 6 HOH B 65 365 204 HOH HOH . T 6 HOH B 66 366 8 HOH HOH . T 6 HOH B 67 367 225 HOH HOH . T 6 HOH B 68 368 22 HOH HOH . T 6 HOH B 69 369 67 HOH HOH . T 6 HOH B 70 370 170 HOH HOH . T 6 HOH B 71 371 235 HOH HOH . T 6 HOH B 72 372 187 HOH HOH . T 6 HOH B 73 373 288 HOH HOH . T 6 HOH B 74 374 120 HOH HOH . T 6 HOH B 75 375 241 HOH HOH . T 6 HOH B 76 376 270 HOH HOH . T 6 HOH B 77 377 143 HOH HOH . T 6 HOH B 78 378 175 HOH HOH . T 6 HOH B 79 379 92 HOH HOH . T 6 HOH B 80 380 93 HOH HOH . T 6 HOH B 81 381 223 HOH HOH . T 6 HOH B 82 382 190 HOH HOH . T 6 HOH B 83 383 189 HOH HOH . T 6 HOH B 84 384 197 HOH HOH . T 6 HOH B 85 385 133 HOH HOH . T 6 HOH B 86 386 266 HOH HOH . T 6 HOH B 87 387 126 HOH HOH . T 6 HOH B 88 388 86 HOH HOH . T 6 HOH B 89 389 131 HOH HOH . T 6 HOH B 90 390 125 HOH HOH . T 6 HOH B 91 391 243 HOH HOH . T 6 HOH B 92 392 232 HOH HOH . T 6 HOH B 93 393 176 HOH HOH . T 6 HOH B 94 394 287 HOH HOH . T 6 HOH B 95 395 253 HOH HOH . T 6 HOH B 96 396 258 HOH HOH . T 6 HOH B 97 397 264 HOH HOH . T 6 HOH B 98 398 117 HOH HOH . T 6 HOH B 99 399 85 HOH HOH . U 6 HOH C 1 301 282 HOH HOH . U 6 HOH C 2 302 245 HOH HOH . U 6 HOH C 3 303 20 HOH HOH . U 6 HOH C 4 304 259 HOH HOH . U 6 HOH C 5 305 110 HOH HOH . U 6 HOH C 6 306 56 HOH HOH . U 6 HOH C 7 307 210 HOH HOH . U 6 HOH C 8 308 174 HOH HOH . U 6 HOH C 9 309 168 HOH HOH . U 6 HOH C 10 310 261 HOH HOH . U 6 HOH C 11 311 156 HOH HOH . U 6 HOH C 12 312 242 HOH HOH . U 6 HOH C 13 313 215 HOH HOH . U 6 HOH C 14 314 62 HOH HOH . U 6 HOH C 15 315 122 HOH HOH . U 6 HOH C 16 316 42 HOH HOH . U 6 HOH C 17 317 61 HOH HOH . U 6 HOH C 18 318 179 HOH HOH . U 6 HOH C 19 319 81 HOH HOH . U 6 HOH C 20 320 167 HOH HOH . U 6 HOH C 21 321 25 HOH HOH . U 6 HOH C 22 322 240 HOH HOH . U 6 HOH C 23 323 124 HOH HOH . U 6 HOH C 24 324 226 HOH HOH . U 6 HOH C 25 325 9 HOH HOH . U 6 HOH C 26 326 27 HOH HOH . U 6 HOH C 27 327 154 HOH HOH . U 6 HOH C 28 328 3 HOH HOH . U 6 HOH C 29 329 114 HOH HOH . U 6 HOH C 30 330 66 HOH HOH . U 6 HOH C 31 331 251 HOH HOH . U 6 HOH C 32 332 177 HOH HOH . U 6 HOH C 33 333 70 HOH HOH . U 6 HOH C 34 334 112 HOH HOH . U 6 HOH C 35 335 68 HOH HOH . U 6 HOH C 36 336 5 HOH HOH . U 6 HOH C 37 337 32 HOH HOH . U 6 HOH C 38 338 207 HOH HOH . U 6 HOH C 39 339 97 HOH HOH . U 6 HOH C 40 340 46 HOH HOH . U 6 HOH C 41 341 34 HOH HOH . U 6 HOH C 42 342 203 HOH HOH . U 6 HOH C 43 343 77 HOH HOH . U 6 HOH C 44 344 262 HOH HOH . U 6 HOH C 45 345 41 HOH HOH . U 6 HOH C 46 346 129 HOH HOH . U 6 HOH C 47 347 18 HOH HOH . U 6 HOH C 48 348 51 HOH HOH . U 6 HOH C 49 349 128 HOH HOH . U 6 HOH C 50 350 104 HOH HOH . U 6 HOH C 51 351 115 HOH HOH . U 6 HOH C 52 352 127 HOH HOH . U 6 HOH C 53 353 6 HOH HOH . U 6 HOH C 54 354 188 HOH HOH . U 6 HOH C 55 355 158 HOH HOH . U 6 HOH C 56 356 205 HOH HOH . U 6 HOH C 57 357 153 HOH HOH . U 6 HOH C 58 358 238 HOH HOH . U 6 HOH C 59 359 148 HOH HOH . U 6 HOH C 60 360 271 HOH HOH . U 6 HOH C 61 361 40 HOH HOH . U 6 HOH C 62 362 269 HOH HOH . U 6 HOH C 63 363 103 HOH HOH . U 6 HOH C 64 364 275 HOH HOH . U 6 HOH C 65 365 227 HOH HOH . U 6 HOH C 66 366 209 HOH HOH . U 6 HOH C 67 367 149 HOH HOH . U 6 HOH C 68 368 157 HOH HOH . U 6 HOH C 69 369 249 HOH HOH . U 6 HOH C 70 370 39 HOH HOH . U 6 HOH C 71 371 268 HOH HOH . U 6 HOH C 72 372 260 HOH HOH . U 6 HOH C 73 373 230 HOH HOH . U 6 HOH C 74 374 155 HOH HOH . U 6 HOH C 75 375 256 HOH HOH . U 6 HOH C 76 376 272 HOH HOH . U 6 HOH C 77 377 278 HOH HOH . U 6 HOH C 78 378 208 HOH HOH . U 6 HOH C 79 379 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 4 55.017 -49.175 -17.74 1 33.82 ? C1 GOL 205 B 1 HETATM 2 O O1 GOL . . . N 4 54.366 -49.686 -18.918 1 37.33 ? O1 GOL 205 B 1 HETATM 3 C C2 GOL . . . N 4 54.205 -48.062 -17.108 1 31.06 ? C2 GOL 205 B 1 HETATM 4 O O2 GOL . . . N 4 53.43 -47.404 -18.06 1 29.08 ? O2 GOL 205 B 1 HETATM 5 C C3 GOL . . . N 4 55.07 -46.995 -16.51 1 32.34 ? C3 GOL 205 B 1 HETATM 6 O O3 GOL . . . N 4 55.976 -47.575 -15.614 1 37.37 ? O3 GOL 205 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 6 #