data_5HVX # _model_server_result.job_id osmyLNoYdEyC3bd5f9nfyQ _model_server_result.datetime_utc '2024-10-12 05:19:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5HVX # _exptl.entry_id 5HVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.646 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DODECAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HVX _cell.length_a 109 _cell.length_b 109 _cell.length_c 210.59 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 109 109 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 109 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 109 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NA NA . A NA 302 1_555 J O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc2 C NA NA . A NA 302 1_555 J O HOH . A HOH 402 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? # _chem_comp.formula 'C24 H50 O13' _chem_comp.formula_weight 546.646 _chem_comp.id 12P _chem_comp.mon_nstd_flag . _chem_comp.name 'DODECAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O37 C36 12P sing 1 n n O37 H37 12P sing 2 n n C36 C35 12P sing 3 n n C36 H361 12P sing 4 n n C36 H362 12P sing 5 n n C35 O34 12P sing 6 n n C35 H351 12P sing 7 n n C35 H352 12P sing 8 n n O34 C33 12P sing 9 n n C33 C32 12P sing 10 n n C33 H331 12P sing 11 n n C33 H332 12P sing 12 n n C32 O31 12P sing 13 n n C32 H321 12P sing 14 n n C32 H322 12P sing 15 n n O31 C30 12P sing 16 n n C30 C29 12P sing 17 n n C30 H301 12P sing 18 n n C30 H302 12P sing 19 n n C29 O28 12P sing 20 n n C29 H291 12P sing 21 n n C29 H292 12P sing 22 n n O28 C27 12P sing 23 n n C27 C26 12P sing 24 n n C27 H271 12P sing 25 n n C27 H272 12P sing 26 n n C26 O25 12P sing 27 n n C26 H261 12P sing 28 n n C26 H262 12P sing 29 n n O25 C24 12P sing 30 n n C24 C23 12P sing 31 n n C24 H241 12P sing 32 n n C24 H242 12P sing 33 n n C23 O22 12P sing 34 n n C23 H231 12P sing 35 n n C23 H232 12P sing 36 n n O22 C21 12P sing 37 n n C21 C20 12P sing 38 n n C21 H211 12P sing 39 n n C21 H212 12P sing 40 n n C20 O19 12P sing 41 n n C20 H201 12P sing 42 n n C20 H202 12P sing 43 n n O19 C18 12P sing 44 n n C18 C17 12P sing 45 n n C18 H181 12P sing 46 n n C18 H182 12P sing 47 n n C17 O16 12P sing 48 n n C17 H171 12P sing 49 n n C17 H172 12P sing 50 n n O16 C15 12P sing 51 n n C15 C14 12P sing 52 n n C15 H151 12P sing 53 n n C15 H152 12P sing 54 n n C14 O13 12P sing 55 n n C14 H141 12P sing 56 n n C14 H142 12P sing 57 n n O13 C12 12P sing 58 n n C12 C11 12P sing 59 n n C12 H121 12P sing 60 n n C12 H122 12P sing 61 n n C11 O10 12P sing 62 n n C11 H111 12P sing 63 n n C11 H112 12P sing 64 n n O10 C9 12P sing 65 n n C9 C8 12P sing 66 n n C9 H91 12P sing 67 n n C9 H92 12P sing 68 n n C8 O7 12P sing 69 n n C8 H81 12P sing 70 n n C8 H82 12P sing 71 n n O7 C6 12P sing 72 n n C6 C5 12P sing 73 n n C6 H61 12P sing 74 n n C6 H62 12P sing 75 n n C5 O4 12P sing 76 n n C5 H51 12P sing 77 n n C5 H52 12P sing 78 n n O4 C3 12P sing 79 n n C3 C2 12P sing 80 n n C3 H31 12P sing 81 n n C3 H32 12P sing 82 n n C2 O1 12P sing 83 n n C2 H21 12P sing 84 n n C2 H22 12P sing 85 n n O1 HO1 12P sing 86 n n # _atom_sites.entry_id 5HVX _atom_sites.fract_transf_matrix[1][1] 0.009174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 401 2CV 2CV . F 4 12P A 1 305 501 12P 12P . G 5 EDO A 1 306 1 EDO EDO . H 6 MES A 1 307 1 MES MES . I 6 MES A 1 308 2 MES MES . J 7 HOH A 1 401 65 HOH HOH . J 7 HOH A 2 402 64 HOH HOH . J 7 HOH A 3 403 2 HOH HOH . J 7 HOH A 4 404 4 HOH HOH . J 7 HOH A 5 405 15 HOH HOH . J 7 HOH A 6 406 96 HOH HOH . J 7 HOH A 7 407 28 HOH HOH . J 7 HOH A 8 408 5 HOH HOH . J 7 HOH A 9 409 78 HOH HOH . J 7 HOH A 10 410 11 HOH HOH . J 7 HOH A 11 411 6 HOH HOH . J 7 HOH A 12 412 32 HOH HOH . J 7 HOH A 13 413 7 HOH HOH . J 7 HOH A 14 414 66 HOH HOH . J 7 HOH A 15 415 45 HOH HOH . J 7 HOH A 16 416 25 HOH HOH . J 7 HOH A 17 417 44 HOH HOH . J 7 HOH A 18 418 87 HOH HOH . J 7 HOH A 19 419 14 HOH HOH . J 7 HOH A 20 420 99 HOH HOH . J 7 HOH A 21 421 9 HOH HOH . J 7 HOH A 22 422 79 HOH HOH . J 7 HOH A 23 423 91 HOH HOH . J 7 HOH A 24 424 50 HOH HOH . J 7 HOH A 25 425 3 HOH HOH . J 7 HOH A 26 426 55 HOH HOH . J 7 HOH A 27 427 83 HOH HOH . J 7 HOH A 28 428 18 HOH HOH . J 7 HOH A 29 429 67 HOH HOH . J 7 HOH A 30 430 77 HOH HOH . J 7 HOH A 31 431 16 HOH HOH . J 7 HOH A 32 432 49 HOH HOH . J 7 HOH A 33 433 19 HOH HOH . J 7 HOH A 34 434 13 HOH HOH . J 7 HOH A 35 435 22 HOH HOH . J 7 HOH A 36 436 27 HOH HOH . J 7 HOH A 37 437 71 HOH HOH . J 7 HOH A 38 438 61 HOH HOH . J 7 HOH A 39 439 39 HOH HOH . J 7 HOH A 40 440 81 HOH HOH . J 7 HOH A 41 441 69 HOH HOH . J 7 HOH A 42 442 88 HOH HOH . J 7 HOH A 43 443 56 HOH HOH . J 7 HOH A 44 444 86 HOH HOH . J 7 HOH A 45 445 98 HOH HOH . J 7 HOH A 46 446 40 HOH HOH . J 7 HOH A 47 447 1 HOH HOH . J 7 HOH A 48 448 62 HOH HOH . J 7 HOH A 49 449 52 HOH HOH . J 7 HOH A 50 450 48 HOH HOH . J 7 HOH A 51 451 76 HOH HOH . J 7 HOH A 52 452 100 HOH HOH . J 7 HOH A 53 453 53 HOH HOH . J 7 HOH A 54 454 54 HOH HOH . J 7 HOH A 55 455 33 HOH HOH . J 7 HOH A 56 456 17 HOH HOH . J 7 HOH A 57 457 97 HOH HOH . J 7 HOH A 58 458 82 HOH HOH . J 7 HOH A 59 459 95 HOH HOH . J 7 HOH A 60 460 21 HOH HOH . J 7 HOH A 61 461 47 HOH HOH . J 7 HOH A 62 462 23 HOH HOH . J 7 HOH A 63 463 12 HOH HOH . J 7 HOH A 64 464 31 HOH HOH . J 7 HOH A 65 465 8 HOH HOH . J 7 HOH A 66 466 35 HOH HOH . J 7 HOH A 67 467 41 HOH HOH . J 7 HOH A 68 468 20 HOH HOH . J 7 HOH A 69 469 29 HOH HOH . J 7 HOH A 70 470 42 HOH HOH . J 7 HOH A 71 471 93 HOH HOH . J 7 HOH A 72 472 90 HOH HOH . J 7 HOH A 73 473 46 HOH HOH . J 7 HOH A 74 474 24 HOH HOH . J 7 HOH A 75 475 94 HOH HOH . J 7 HOH A 76 476 10 HOH HOH . J 7 HOH A 77 477 43 HOH HOH . J 7 HOH A 78 478 26 HOH HOH . J 7 HOH A 79 479 51 HOH HOH . J 7 HOH A 80 480 60 HOH HOH . J 7 HOH A 81 481 37 HOH HOH . J 7 HOH A 82 482 92 HOH HOH . J 7 HOH A 83 483 63 HOH HOH . J 7 HOH A 84 484 70 HOH HOH . J 7 HOH A 85 485 36 HOH HOH . J 7 HOH A 86 486 38 HOH HOH . J 7 HOH A 87 487 80 HOH HOH . J 7 HOH A 88 488 30 HOH HOH . J 7 HOH A 89 489 58 HOH HOH . J 7 HOH A 90 490 34 HOH HOH . J 7 HOH A 91 491 73 HOH HOH . J 7 HOH A 92 492 89 HOH HOH . J 7 HOH A 93 493 84 HOH HOH . J 7 HOH A 94 494 59 HOH HOH . J 7 HOH A 95 495 75 HOH HOH . J 7 HOH A 96 496 57 HOH HOH . J 7 HOH A 97 497 74 HOH HOH . J 7 HOH A 98 498 72 HOH HOH . J 7 HOH A 99 499 68 HOH HOH . J 7 HOH A 100 500 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O37 12P . . . F 4 69.487 57.37 30.153 1 121.03 ? O37 12P 305 A 1 HETATM 2 C C36 12P . . . F 4 69.604 58.634 30.793 1 121.82 ? C36 12P 305 A 1 HETATM 3 C C35 12P . . . F 4 70.825 58.676 31.665 1 121.91 ? C35 12P 305 A 1 HETATM 4 O O34 12P . . . F 4 70.938 59.943 32.308 1 121.13 ? O34 12P 305 A 1 HETATM 5 C C33 12P . . . F 4 72.163 60.611 32.024 1 120.09 ? C33 12P 305 A 1 HETATM 6 C C32 12P . . . F 4 71.907 62.026 31.61 1 119 ? C32 12P 305 A 1 HETATM 7 O O31 12P . . . F 4 73.124 62.642 31.208 1 118.18 ? O31 12P 305 A 1 HETATM 8 C C30 12P . . . F 4 72.935 63.782 30.377 1 117.33 ? C30 12P 305 A 1 HETATM 9 C C29 12P . . . F 4 73.793 63.671 29.154 1 117.05 ? C29 12P 305 A 1 HETATM 10 O O28 12P . . . F 4 73.681 64.843 28.354 1 116.03 ? O28 12P 305 A 1 HETATM 11 C C27 12P . . . F 4 74.008 64.626 26.984 1 113.71 ? C27 12P 305 A 1 HETATM 12 C C26 12P . . . F 4 73.531 65.777 26.149 1 111.2 ? C26 12P 305 A 1 HETATM 13 O O25 12P . . . F 4 73.779 65.537 24.768 1 108.48 ? O25 12P 305 A 1 HETATM 14 C C24 12P . . . F 4 73.092 66.444 23.916 1 106.23 ? C24 12P 305 A 1 HETATM 15 C C23 12P . . . F 4 73.234 66.037 22.481 1 105.17 ? C23 12P 305 A 1 HETATM 16 O O22 12P . . . F 4 72.421 64.907 22.181 1 103.95 ? O22 12P 305 A 1 HETATM 17 C C21 12P . . . F 4 72.383 64.598 20.794 1 102.07 ? C21 12P 305 A 1 HETATM 18 C C20 12P . . . F 4 72.863 63.204 20.552 1 101.17 ? C20 12P 305 A 1 HETATM 19 O O19 12P . . . F 4 74.241 63.105 20.884 1 101.88 ? O19 12P 305 A 1 HETATM 20 C C18 12P . . . F 4 74.8 61.825 20.61 1 100.01 ? C18 12P 305 A 1 HETATM 21 C C17 12P . . . F 4 76.277 61.929 20.401 1 96.49 ? C17 12P 305 A 1 HETATM 22 O O16 12P . . . F 4 76.562 62.678 19.226 1 93.62 ? O16 12P 305 A 1 HETATM 23 C C15 12P . . . F 4 77.57 62.083 18.422 1 92.12 ? C15 12P 305 A 1 HETATM 24 C C14 12P . . . F 4 77.578 62.704 17.069 1 92.15 ? C14 12P 305 A 1 HETATM 25 O O13 12P . . . F 4 78.352 61.906 16.186 1 93.27 ? O13 12P 305 A 1 HETATM 26 C C12 12P . . . F 4 78.325 62.371 14.845 1 93.78 ? C12 12P 305 A 1 HETATM 27 C C11 12P . . . F 4 77.889 61.281 13.919 1 95.42 ? C11 12P 305 A 1 HETATM 28 O O10 12P . . . F 4 78.072 61.713 12.577 1 97.36 ? O10 12P 305 A 1 HETATM 29 C C9 12P . . . F 4 77.168 61.122 11.649 1 94.8 ? C9 12P 305 A 1 HETATM 30 C C8 12P . . . F 4 77.172 61.893 10.374 1 92.68 ? C8 12P 305 A 1 HETATM 31 O O7 12P . . . F 4 78.5 61.976 9.859 1 93.24 ? O7 12P 305 A 1 HETATM 32 C C6 12P . . . F 4 78.59 61.791 8.446 1 88.48 ? C6 12P 305 A 1 HETATM 33 C C5 12P . . . F 4 79.231 60.455 8.1 1 80.5 ? C5 12P 305 A 1 HETATM 34 O O4 12P . . . F 4 78.531 59.347 8.64 1 71.6 ? O4 12P 305 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #