data_5HVX # _model_server_result.job_id kv0qN3jbHWMg0cmr25L7dA _model_server_result.datetime_utc '2024-10-12 05:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5HVX # _exptl.entry_id 5HVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HVX _cell.length_a 109 _cell.length_b 109 _cell.length_c 210.59 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 109 109 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 109 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 109 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C NA NA . A NA 302 1_555 J O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc2 C NA NA . A NA 302 1_555 J O HOH . A HOH 402 2_665 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 231 n n C1 C2 EDO sing 232 n n C1 H11 EDO sing 233 n n C1 H12 EDO sing 234 n n O1 HO1 EDO sing 235 n n C2 O2 EDO sing 236 n n C2 H21 EDO sing 237 n n C2 H22 EDO sing 238 n n O2 HO2 EDO sing 239 n n # _atom_sites.entry_id 5HVX _atom_sites.fract_transf_matrix[1][1] 0.009174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 401 2CV 2CV . F 4 12P A 1 305 501 12P 12P . G 5 EDO A 1 306 1 EDO EDO . H 6 MES A 1 307 1 MES MES . I 6 MES A 1 308 2 MES MES . J 7 HOH A 1 401 65 HOH HOH . J 7 HOH A 2 402 64 HOH HOH . J 7 HOH A 3 403 2 HOH HOH . J 7 HOH A 4 404 4 HOH HOH . J 7 HOH A 5 405 15 HOH HOH . J 7 HOH A 6 406 96 HOH HOH . J 7 HOH A 7 407 28 HOH HOH . J 7 HOH A 8 408 5 HOH HOH . J 7 HOH A 9 409 78 HOH HOH . J 7 HOH A 10 410 11 HOH HOH . J 7 HOH A 11 411 6 HOH HOH . J 7 HOH A 12 412 32 HOH HOH . J 7 HOH A 13 413 7 HOH HOH . J 7 HOH A 14 414 66 HOH HOH . J 7 HOH A 15 415 45 HOH HOH . J 7 HOH A 16 416 25 HOH HOH . J 7 HOH A 17 417 44 HOH HOH . J 7 HOH A 18 418 87 HOH HOH . J 7 HOH A 19 419 14 HOH HOH . J 7 HOH A 20 420 99 HOH HOH . J 7 HOH A 21 421 9 HOH HOH . J 7 HOH A 22 422 79 HOH HOH . J 7 HOH A 23 423 91 HOH HOH . J 7 HOH A 24 424 50 HOH HOH . J 7 HOH A 25 425 3 HOH HOH . J 7 HOH A 26 426 55 HOH HOH . J 7 HOH A 27 427 83 HOH HOH . J 7 HOH A 28 428 18 HOH HOH . J 7 HOH A 29 429 67 HOH HOH . J 7 HOH A 30 430 77 HOH HOH . J 7 HOH A 31 431 16 HOH HOH . J 7 HOH A 32 432 49 HOH HOH . J 7 HOH A 33 433 19 HOH HOH . J 7 HOH A 34 434 13 HOH HOH . J 7 HOH A 35 435 22 HOH HOH . J 7 HOH A 36 436 27 HOH HOH . J 7 HOH A 37 437 71 HOH HOH . J 7 HOH A 38 438 61 HOH HOH . J 7 HOH A 39 439 39 HOH HOH . J 7 HOH A 40 440 81 HOH HOH . J 7 HOH A 41 441 69 HOH HOH . J 7 HOH A 42 442 88 HOH HOH . J 7 HOH A 43 443 56 HOH HOH . J 7 HOH A 44 444 86 HOH HOH . J 7 HOH A 45 445 98 HOH HOH . J 7 HOH A 46 446 40 HOH HOH . J 7 HOH A 47 447 1 HOH HOH . J 7 HOH A 48 448 62 HOH HOH . J 7 HOH A 49 449 52 HOH HOH . J 7 HOH A 50 450 48 HOH HOH . J 7 HOH A 51 451 76 HOH HOH . J 7 HOH A 52 452 100 HOH HOH . J 7 HOH A 53 453 53 HOH HOH . J 7 HOH A 54 454 54 HOH HOH . J 7 HOH A 55 455 33 HOH HOH . J 7 HOH A 56 456 17 HOH HOH . J 7 HOH A 57 457 97 HOH HOH . J 7 HOH A 58 458 82 HOH HOH . J 7 HOH A 59 459 95 HOH HOH . J 7 HOH A 60 460 21 HOH HOH . J 7 HOH A 61 461 47 HOH HOH . J 7 HOH A 62 462 23 HOH HOH . J 7 HOH A 63 463 12 HOH HOH . J 7 HOH A 64 464 31 HOH HOH . J 7 HOH A 65 465 8 HOH HOH . J 7 HOH A 66 466 35 HOH HOH . J 7 HOH A 67 467 41 HOH HOH . J 7 HOH A 68 468 20 HOH HOH . J 7 HOH A 69 469 29 HOH HOH . J 7 HOH A 70 470 42 HOH HOH . J 7 HOH A 71 471 93 HOH HOH . J 7 HOH A 72 472 90 HOH HOH . J 7 HOH A 73 473 46 HOH HOH . J 7 HOH A 74 474 24 HOH HOH . J 7 HOH A 75 475 94 HOH HOH . J 7 HOH A 76 476 10 HOH HOH . J 7 HOH A 77 477 43 HOH HOH . J 7 HOH A 78 478 26 HOH HOH . J 7 HOH A 79 479 51 HOH HOH . J 7 HOH A 80 480 60 HOH HOH . J 7 HOH A 81 481 37 HOH HOH . J 7 HOH A 82 482 92 HOH HOH . J 7 HOH A 83 483 63 HOH HOH . J 7 HOH A 84 484 70 HOH HOH . J 7 HOH A 85 485 36 HOH HOH . J 7 HOH A 86 486 38 HOH HOH . J 7 HOH A 87 487 80 HOH HOH . J 7 HOH A 88 488 30 HOH HOH . J 7 HOH A 89 489 58 HOH HOH . J 7 HOH A 90 490 34 HOH HOH . J 7 HOH A 91 491 73 HOH HOH . J 7 HOH A 92 492 89 HOH HOH . J 7 HOH A 93 493 84 HOH HOH . J 7 HOH A 94 494 59 HOH HOH . J 7 HOH A 95 495 75 HOH HOH . J 7 HOH A 96 496 57 HOH HOH . J 7 HOH A 97 497 74 HOH HOH . J 7 HOH A 98 498 72 HOH HOH . J 7 HOH A 99 499 68 HOH HOH . J 7 HOH A 100 500 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 5 74.782 58.368 30.374 1 142.7 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . G 5 75.879 57.8 31.071 1 143.15 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . G 5 75.271 59.576 29.541 1 142.46 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . G 5 75.834 60.552 30.401 1 142.15 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #