data_5HWL # _model_server_result.job_id kB6qy3FRF3nSSRbRMNQ9Dw _model_server_result.datetime_utc '2024-10-13 10:22:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5HWL # _exptl.entry_id 5HWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.38 _cell.angle_gamma 90 _cell.entry_id 5HWL _cell.length_a 50.97 _cell.length_b 48.89 _cell.length_c 90.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C SG2 GSH . A GSH 301 1_555 E CBM NNE . B NNE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? covale ? covale2 D SG2 GSH . B GSH 301 1_555 E CAM NNE . B NNE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 5HWL _atom_sites.fract_transf_matrix[1][1] 0.019619 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSH A 1 301 1 GSH DRG . D 2 GSH B 1 301 1 GSH DRG . E 3 NNE B 1 302 1 NNE DRG . F 4 HOH A 1 401 96 HOH HOH . F 4 HOH A 2 402 220 HOH HOH . F 4 HOH A 3 403 120 HOH HOH . F 4 HOH A 4 404 49 HOH HOH . F 4 HOH A 5 405 210 HOH HOH . F 4 HOH A 6 406 77 HOH HOH . F 4 HOH A 7 407 67 HOH HOH . F 4 HOH A 8 408 197 HOH HOH . F 4 HOH A 9 409 80 HOH HOH . F 4 HOH A 10 410 114 HOH HOH . F 4 HOH A 11 411 87 HOH HOH . F 4 HOH A 12 412 209 HOH HOH . F 4 HOH A 13 413 206 HOH HOH . F 4 HOH A 14 414 105 HOH HOH . F 4 HOH A 15 415 162 HOH HOH . F 4 HOH A 16 416 165 HOH HOH . F 4 HOH A 17 417 130 HOH HOH . F 4 HOH A 18 418 178 HOH HOH . F 4 HOH A 19 419 40 HOH HOH . F 4 HOH A 20 420 205 HOH HOH . F 4 HOH A 21 421 65 HOH HOH . F 4 HOH A 22 422 24 HOH HOH . F 4 HOH A 23 423 37 HOH HOH . F 4 HOH A 24 424 91 HOH HOH . F 4 HOH A 25 425 142 HOH HOH . F 4 HOH A 26 426 214 HOH HOH . F 4 HOH A 27 427 93 HOH HOH . F 4 HOH A 28 428 63 HOH HOH . F 4 HOH A 29 429 6 HOH HOH . F 4 HOH A 30 430 3 HOH HOH . F 4 HOH A 31 431 117 HOH HOH . F 4 HOH A 32 432 79 HOH HOH . F 4 HOH A 33 433 86 HOH HOH . F 4 HOH A 34 434 106 HOH HOH . F 4 HOH A 35 435 21 HOH HOH . F 4 HOH A 36 436 192 HOH HOH . F 4 HOH A 37 437 138 HOH HOH . F 4 HOH A 38 438 188 HOH HOH . F 4 HOH A 39 439 185 HOH HOH . F 4 HOH A 40 440 155 HOH HOH . F 4 HOH A 41 441 102 HOH HOH . F 4 HOH A 42 442 18 HOH HOH . F 4 HOH A 43 443 72 HOH HOH . F 4 HOH A 44 444 176 HOH HOH . F 4 HOH A 45 445 119 HOH HOH . F 4 HOH A 46 446 16 HOH HOH . F 4 HOH A 47 447 48 HOH HOH . F 4 HOH A 48 448 71 HOH HOH . F 4 HOH A 49 449 66 HOH HOH . F 4 HOH A 50 450 127 HOH HOH . F 4 HOH A 51 451 20 HOH HOH . F 4 HOH A 52 452 2 HOH HOH . F 4 HOH A 53 453 46 HOH HOH . F 4 HOH A 54 454 137 HOH HOH . F 4 HOH A 55 455 23 HOH HOH . F 4 HOH A 56 456 134 HOH HOH . F 4 HOH A 57 457 56 HOH HOH . F 4 HOH A 58 458 140 HOH HOH . F 4 HOH A 59 459 69 HOH HOH . F 4 HOH A 60 460 8 HOH HOH . F 4 HOH A 61 461 12 HOH HOH . F 4 HOH A 62 462 27 HOH HOH . F 4 HOH A 63 463 112 HOH HOH . F 4 HOH A 64 464 180 HOH HOH . F 4 HOH A 65 465 187 HOH HOH . F 4 HOH A 66 466 42 HOH HOH . F 4 HOH A 67 467 98 HOH HOH . F 4 HOH A 68 468 4 HOH HOH . F 4 HOH A 69 469 70 HOH HOH . F 4 HOH A 70 470 109 HOH HOH . F 4 HOH A 71 471 76 HOH HOH . F 4 HOH A 72 472 202 HOH HOH . F 4 HOH A 73 473 183 HOH HOH . F 4 HOH A 74 474 45 HOH HOH . F 4 HOH A 75 475 38 HOH HOH . F 4 HOH A 76 476 73 HOH HOH . F 4 HOH A 77 477 30 HOH HOH . F 4 HOH A 78 478 39 HOH HOH . F 4 HOH A 79 479 58 HOH HOH . F 4 HOH A 80 480 123 HOH HOH . F 4 HOH A 81 481 36 HOH HOH . F 4 HOH A 82 482 216 HOH HOH . F 4 HOH A 83 483 169 HOH HOH . F 4 HOH A 84 484 9 HOH HOH . F 4 HOH A 85 485 83 HOH HOH . F 4 HOH A 86 486 160 HOH HOH . F 4 HOH A 87 487 51 HOH HOH . F 4 HOH A 88 488 78 HOH HOH . F 4 HOH A 89 489 158 HOH HOH . F 4 HOH A 90 490 211 HOH HOH . F 4 HOH A 91 491 103 HOH HOH . F 4 HOH A 92 492 17 HOH HOH . F 4 HOH A 93 493 126 HOH HOH . F 4 HOH A 94 494 43 HOH HOH . F 4 HOH A 95 495 125 HOH HOH . F 4 HOH A 96 496 124 HOH HOH . F 4 HOH A 97 497 52 HOH HOH . F 4 HOH A 98 498 151 HOH HOH . F 4 HOH A 99 499 92 HOH HOH . F 4 HOH A 100 500 116 HOH HOH . F 4 HOH A 101 501 212 HOH HOH . F 4 HOH A 102 502 68 HOH HOH . F 4 HOH A 103 503 35 HOH HOH . F 4 HOH A 104 504 184 HOH HOH . F 4 HOH A 105 505 161 HOH HOH . F 4 HOH A 106 506 115 HOH HOH . F 4 HOH A 107 507 149 HOH HOH . F 4 HOH A 108 508 1 HOH HOH . F 4 HOH A 109 509 213 HOH HOH . F 4 HOH A 110 510 110 HOH HOH . F 4 HOH A 111 511 146 HOH HOH . F 4 HOH A 112 512 153 HOH HOH . F 4 HOH A 113 513 172 HOH HOH . F 4 HOH A 114 514 163 HOH HOH . F 4 HOH A 115 515 64 HOH HOH . F 4 HOH A 116 516 14 HOH HOH . F 4 HOH A 117 517 199 HOH HOH . F 4 HOH A 118 518 135 HOH HOH . F 4 HOH A 119 519 222 HOH HOH . F 4 HOH A 120 520 194 HOH HOH . F 4 HOH A 121 521 74 HOH HOH . F 4 HOH A 122 522 157 HOH HOH . F 4 HOH A 123 523 175 HOH HOH . F 4 HOH A 124 524 201 HOH HOH . F 4 HOH A 125 525 217 HOH HOH . F 4 HOH A 126 526 132 HOH HOH . F 4 HOH A 127 527 82 HOH HOH . F 4 HOH A 128 528 215 HOH HOH . F 4 HOH A 129 529 223 HOH HOH . F 4 HOH A 130 530 221 HOH HOH . F 4 HOH A 131 531 159 HOH HOH . F 4 HOH A 132 532 171 HOH HOH . F 4 HOH A 133 533 122 HOH HOH . F 4 HOH A 134 534 88 HOH HOH . F 4 HOH A 135 535 164 HOH HOH . G 4 HOH B 1 401 207 HOH HOH . G 4 HOH B 2 402 108 HOH HOH . G 4 HOH B 3 403 181 HOH HOH . G 4 HOH B 4 404 32 HOH HOH . G 4 HOH B 5 405 81 HOH HOH . G 4 HOH B 6 406 129 HOH HOH . G 4 HOH B 7 407 97 HOH HOH . G 4 HOH B 8 408 62 HOH HOH . G 4 HOH B 9 409 174 HOH HOH . G 4 HOH B 10 410 55 HOH HOH . G 4 HOH B 11 411 203 HOH HOH . G 4 HOH B 12 412 59 HOH HOH . G 4 HOH B 13 413 219 HOH HOH . G 4 HOH B 14 414 19 HOH HOH . G 4 HOH B 15 415 136 HOH HOH . G 4 HOH B 16 416 95 HOH HOH . G 4 HOH B 17 417 53 HOH HOH . G 4 HOH B 18 418 25 HOH HOH . G 4 HOH B 19 419 57 HOH HOH . G 4 HOH B 20 420 89 HOH HOH . G 4 HOH B 21 421 31 HOH HOH . G 4 HOH B 22 422 29 HOH HOH . G 4 HOH B 23 423 15 HOH HOH . G 4 HOH B 24 424 13 HOH HOH . G 4 HOH B 25 425 118 HOH HOH . G 4 HOH B 26 426 204 HOH HOH . G 4 HOH B 27 427 131 HOH HOH . G 4 HOH B 28 428 75 HOH HOH . G 4 HOH B 29 429 143 HOH HOH . G 4 HOH B 30 430 26 HOH HOH . G 4 HOH B 31 431 41 HOH HOH . G 4 HOH B 32 432 198 HOH HOH . G 4 HOH B 33 433 104 HOH HOH . G 4 HOH B 34 434 154 HOH HOH . G 4 HOH B 35 435 173 HOH HOH . G 4 HOH B 36 436 22 HOH HOH . G 4 HOH B 37 437 28 HOH HOH . G 4 HOH B 38 438 190 HOH HOH . G 4 HOH B 39 439 121 HOH HOH . G 4 HOH B 40 440 61 HOH HOH . G 4 HOH B 41 441 60 HOH HOH . G 4 HOH B 42 442 5 HOH HOH . G 4 HOH B 43 443 139 HOH HOH . G 4 HOH B 44 444 34 HOH HOH . G 4 HOH B 45 445 7 HOH HOH . G 4 HOH B 46 446 218 HOH HOH . G 4 HOH B 47 447 195 HOH HOH . G 4 HOH B 48 448 84 HOH HOH . G 4 HOH B 49 449 11 HOH HOH . G 4 HOH B 50 450 200 HOH HOH . G 4 HOH B 51 451 47 HOH HOH . G 4 HOH B 52 452 85 HOH HOH . G 4 HOH B 53 453 133 HOH HOH . G 4 HOH B 54 454 196 HOH HOH . G 4 HOH B 55 455 156 HOH HOH . G 4 HOH B 56 456 90 HOH HOH . G 4 HOH B 57 457 167 HOH HOH . G 4 HOH B 58 458 113 HOH HOH . G 4 HOH B 59 459 191 HOH HOH . G 4 HOH B 60 460 166 HOH HOH . G 4 HOH B 61 461 10 HOH HOH . G 4 HOH B 62 462 170 HOH HOH . G 4 HOH B 63 463 94 HOH HOH . G 4 HOH B 64 464 147 HOH HOH . G 4 HOH B 65 465 44 HOH HOH . G 4 HOH B 66 466 179 HOH HOH . G 4 HOH B 67 467 177 HOH HOH . G 4 HOH B 68 468 152 HOH HOH . G 4 HOH B 69 469 186 HOH HOH . G 4 HOH B 70 470 54 HOH HOH . G 4 HOH B 71 471 168 HOH HOH . G 4 HOH B 72 472 99 HOH HOH . G 4 HOH B 73 473 33 HOH HOH . G 4 HOH B 74 474 182 HOH HOH . G 4 HOH B 75 475 50 HOH HOH . G 4 HOH B 76 476 111 HOH HOH . G 4 HOH B 77 477 150 HOH HOH . G 4 HOH B 78 478 189 HOH HOH . G 4 HOH B 79 479 141 HOH HOH . G 4 HOH B 80 480 128 HOH HOH . G 4 HOH B 81 481 144 HOH HOH . G 4 HOH B 82 482 208 HOH HOH . G 4 HOH B 83 483 100 HOH HOH . G 4 HOH B 84 484 193 HOH HOH . G 4 HOH B 85 485 145 HOH HOH . G 4 HOH B 86 486 101 HOH HOH . G 4 HOH B 87 487 107 HOH HOH . G 4 HOH B 88 488 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . D 2 17.112 -2.114 20.706 1 20 ? N1 GSH 301 B 1 HETATM 2 C CA1 GSH . . . D 2 18.254 -2.333 19.749 1 20 ? CA1 GSH 301 B 1 HETATM 3 C C1 GSH . . . D 2 18.206 -1.221 18.667 1 20 ? C1 GSH 301 B 1 HETATM 4 O O11 GSH . . . D 2 19.23 -0.963 18.126 1 20 ? O11 GSH 301 B 1 HETATM 5 O O12 GSH . . . D 2 17.133 -0.753 18.465 1 20 ? O12 GSH 301 B 1 HETATM 6 C CB1 GSH . . . D 2 18.302 -3.731 19.173 1 20 ? CB1 GSH 301 B 1 HETATM 7 C CG1 GSH . . . D 2 19.658 -4.061 18.553 1 20 ? CG1 GSH 301 B 1 HETATM 8 C CD1 GSH . . . D 2 19.812 -5.528 18.137 1 20 ? CD1 GSH 301 B 1 HETATM 9 O OE1 GSH . . . D 2 19.061 -6.368 18.571 1 20 ? OE1 GSH 301 B 1 HETATM 10 N N2 GSH . . . D 2 20.762 -5.74 17.252 1 20 ? N2 GSH 301 B 1 HETATM 11 C CA2 GSH . . . D 2 21.026 -7.091 16.714 1 20 ? CA2 GSH 301 B 1 HETATM 12 C C2 GSH . . . D 2 22.49 -7.545 16.822 1 20 ? C2 GSH 301 B 1 HETATM 13 O O2 GSH . . . D 2 22.903 -8.441 16.118 1 20 ? O2 GSH 301 B 1 HETATM 14 C CB2 GSH . . . D 2 20.756 -7.11 15.21 1 20 ? CB2 GSH 301 B 1 HETATM 15 S SG2 GSH . . . D 2 19.157 -6.41 14.71 1 20 ? SG2 GSH 301 B 1 HETATM 16 N N3 GSH . . . D 2 23.237 -6.956 17.71 1 20 ? N3 GSH 301 B 1 HETATM 17 C CA3 GSH . . . D 2 24.644 -7.287 17.825 1 20 ? CA3 GSH 301 B 1 HETATM 18 C C3 GSH . . . D 2 25.098 -7.831 19.135 1 20 ? C3 GSH 301 B 1 HETATM 19 O O31 GSH . . . D 2 26.23 -8.317 19.187 1 20 ? O31 GSH 301 B 1 HETATM 20 O O32 GSH . . . D 2 24.305 -7.719 20.042 1 20 ? O32 GSH 301 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #