data_5HWU # _model_server_result.job_id oJGyVVrpQidZi0wLhXwhXw _model_server_result.datetime_utc '2024-11-23 01:54:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5HWU # _exptl.entry_id 5HWU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HWU _cell.length_a 52.263 _cell.length_b 78.014 _cell.length_c 141.958 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 41 A GLU 47 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc2 A OE1 GLU 44 A GLU 50 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 A OE1 GLU 73 A GLU 79 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 A OD2 ASP 76 A ASP 82 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 C MN MN . A MN 201 1_555 H O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc6 C MN MN . A MN 201 1_555 H O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc7 B OE1 GLU 41 B GLU 47 1_555 F MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc8 B OE1 GLU 44 B GLU 50 1_555 F MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc9 B NE2 HIS 72 B HIS 78 1_555 G MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc10 B OE1 GLU 73 B GLU 79 1_555 F MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc11 B OD2 ASP 76 B ASP 82 1_555 F MN MN . B MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc12 B OD2 ASP 76 B ASP 82 1_555 G MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc13 E O2B DUP . B DUP 201 1_555 G MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc14 E O3G DUP . B DUP 201 1_555 G MN MN . B MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc15 F MN MN . B MN 202 1_555 I O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc16 F MN MN . B MN 202 1_555 I O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc17 G MN MN . B MN 203 1_555 I O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc18 G MN MN . B MN 203 1_555 I O HOH . B HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 5HWU _atom_sites.fract_transf_matrix[1][1] 0.019134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 3 MN MN . D 3 GOL A 1 202 1 GOL GOL . E 4 DUP B 1 201 3246 DUP DUP . F 2 MN B 1 202 1 MN MN . G 2 MN B 1 203 2 MN MN . H 5 HOH A 1 301 131 HOH HOH . H 5 HOH A 2 302 113 HOH HOH . H 5 HOH A 3 303 138 HOH HOH . H 5 HOH A 4 304 17 HOH HOH . H 5 HOH A 5 305 36 HOH HOH . H 5 HOH A 6 306 73 HOH HOH . H 5 HOH A 7 307 28 HOH HOH . H 5 HOH A 8 308 103 HOH HOH . H 5 HOH A 9 309 9 HOH HOH . H 5 HOH A 10 310 48 HOH HOH . H 5 HOH A 11 311 169 HOH HOH . H 5 HOH A 12 312 81 HOH HOH . H 5 HOH A 13 313 6 HOH HOH . H 5 HOH A 14 314 54 HOH HOH . H 5 HOH A 15 315 14 HOH HOH . H 5 HOH A 16 316 41 HOH HOH . H 5 HOH A 17 317 25 HOH HOH . H 5 HOH A 18 318 8 HOH HOH . H 5 HOH A 19 319 44 HOH HOH . H 5 HOH A 20 320 77 HOH HOH . H 5 HOH A 21 321 65 HOH HOH . H 5 HOH A 22 322 22 HOH HOH . H 5 HOH A 23 323 37 HOH HOH . H 5 HOH A 24 324 94 HOH HOH . H 5 HOH A 25 325 15 HOH HOH . H 5 HOH A 26 326 149 HOH HOH . H 5 HOH A 27 327 33 HOH HOH . H 5 HOH A 28 328 62 HOH HOH . H 5 HOH A 29 329 127 HOH HOH . H 5 HOH A 30 330 55 HOH HOH . H 5 HOH A 31 331 160 HOH HOH . H 5 HOH A 32 332 21 HOH HOH . H 5 HOH A 33 333 29 HOH HOH . H 5 HOH A 34 334 23 HOH HOH . H 5 HOH A 35 335 71 HOH HOH . H 5 HOH A 36 336 63 HOH HOH . H 5 HOH A 37 337 144 HOH HOH . H 5 HOH A 38 338 121 HOH HOH . H 5 HOH A 39 339 90 HOH HOH . H 5 HOH A 40 340 46 HOH HOH . H 5 HOH A 41 341 82 HOH HOH . H 5 HOH A 42 342 56 HOH HOH . H 5 HOH A 43 343 12 HOH HOH . H 5 HOH A 44 344 132 HOH HOH . H 5 HOH A 45 345 165 HOH HOH . H 5 HOH A 46 346 130 HOH HOH . H 5 HOH A 47 347 89 HOH HOH . H 5 HOH A 48 348 84 HOH HOH . H 5 HOH A 49 349 148 HOH HOH . H 5 HOH A 50 350 135 HOH HOH . H 5 HOH A 51 351 137 HOH HOH . H 5 HOH A 52 352 145 HOH HOH . H 5 HOH A 53 353 110 HOH HOH . H 5 HOH A 54 354 162 HOH HOH . H 5 HOH A 55 355 59 HOH HOH . H 5 HOH A 56 356 163 HOH HOH . H 5 HOH A 57 357 151 HOH HOH . H 5 HOH A 58 358 79 HOH HOH . H 5 HOH A 59 359 100 HOH HOH . H 5 HOH A 60 360 150 HOH HOH . H 5 HOH A 61 361 70 HOH HOH . H 5 HOH A 62 362 156 HOH HOH . H 5 HOH A 63 363 153 HOH HOH . H 5 HOH A 64 364 159 HOH HOH . H 5 HOH A 65 365 111 HOH HOH . H 5 HOH A 66 366 53 HOH HOH . H 5 HOH A 67 367 129 HOH HOH . H 5 HOH A 68 368 152 HOH HOH . H 5 HOH A 69 369 75 HOH HOH . H 5 HOH A 70 370 142 HOH HOH . H 5 HOH A 71 371 102 HOH HOH . H 5 HOH A 72 372 30 HOH HOH . H 5 HOH A 73 373 47 HOH HOH . H 5 HOH A 74 374 123 HOH HOH . H 5 HOH A 75 375 154 HOH HOH . H 5 HOH A 76 376 34 HOH HOH . H 5 HOH A 77 377 101 HOH HOH . H 5 HOH A 78 378 66 HOH HOH . I 5 HOH B 1 301 76 HOH HOH . I 5 HOH B 2 302 109 HOH HOH . I 5 HOH B 3 303 98 HOH HOH . I 5 HOH B 4 304 27 HOH HOH . I 5 HOH B 5 305 7 HOH HOH . I 5 HOH B 6 306 52 HOH HOH . I 5 HOH B 7 307 112 HOH HOH . I 5 HOH B 8 308 95 HOH HOH . I 5 HOH B 9 309 3 HOH HOH . I 5 HOH B 10 310 4 HOH HOH . I 5 HOH B 11 311 38 HOH HOH . I 5 HOH B 12 312 39 HOH HOH . I 5 HOH B 13 313 26 HOH HOH . I 5 HOH B 14 314 108 HOH HOH . I 5 HOH B 15 315 155 HOH HOH . I 5 HOH B 16 316 18 HOH HOH . I 5 HOH B 17 317 19 HOH HOH . I 5 HOH B 18 318 51 HOH HOH . I 5 HOH B 19 319 115 HOH HOH . I 5 HOH B 20 320 99 HOH HOH . I 5 HOH B 21 321 69 HOH HOH . I 5 HOH B 22 322 118 HOH HOH . I 5 HOH B 23 323 105 HOH HOH . I 5 HOH B 24 324 20 HOH HOH . I 5 HOH B 25 325 146 HOH HOH . I 5 HOH B 26 326 31 HOH HOH . I 5 HOH B 27 327 10 HOH HOH . I 5 HOH B 28 328 2 HOH HOH . I 5 HOH B 29 329 42 HOH HOH . I 5 HOH B 30 330 5 HOH HOH . I 5 HOH B 31 331 104 HOH HOH . I 5 HOH B 32 332 80 HOH HOH . I 5 HOH B 33 333 1 HOH HOH . I 5 HOH B 34 334 11 HOH HOH . I 5 HOH B 35 335 92 HOH HOH . I 5 HOH B 36 336 136 HOH HOH . I 5 HOH B 37 337 16 HOH HOH . I 5 HOH B 38 338 43 HOH HOH . I 5 HOH B 39 339 50 HOH HOH . I 5 HOH B 40 340 119 HOH HOH . I 5 HOH B 41 341 158 HOH HOH . I 5 HOH B 42 342 13 HOH HOH . I 5 HOH B 43 343 57 HOH HOH . I 5 HOH B 44 344 87 HOH HOH . I 5 HOH B 45 345 72 HOH HOH . I 5 HOH B 46 346 60 HOH HOH . I 5 HOH B 47 347 91 HOH HOH . I 5 HOH B 48 348 83 HOH HOH . I 5 HOH B 49 349 49 HOH HOH . I 5 HOH B 50 350 32 HOH HOH . I 5 HOH B 51 351 35 HOH HOH . I 5 HOH B 52 352 107 HOH HOH . I 5 HOH B 53 353 78 HOH HOH . I 5 HOH B 54 354 74 HOH HOH . I 5 HOH B 55 355 106 HOH HOH . I 5 HOH B 56 356 68 HOH HOH . I 5 HOH B 57 357 86 HOH HOH . I 5 HOH B 58 358 88 HOH HOH . I 5 HOH B 59 359 40 HOH HOH . I 5 HOH B 60 360 58 HOH HOH . I 5 HOH B 61 361 97 HOH HOH . I 5 HOH B 62 362 168 HOH HOH . I 5 HOH B 63 363 93 HOH HOH . I 5 HOH B 64 364 61 HOH HOH . I 5 HOH B 65 365 116 HOH HOH . I 5 HOH B 66 366 167 HOH HOH . I 5 HOH B 67 367 117 HOH HOH . I 5 HOH B 68 368 67 HOH HOH . I 5 HOH B 69 369 133 HOH HOH . I 5 HOH B 70 370 64 HOH HOH . I 5 HOH B 71 371 126 HOH HOH . I 5 HOH B 72 372 164 HOH HOH . I 5 HOH B 73 373 161 HOH HOH . I 5 HOH B 74 374 166 HOH HOH . I 5 HOH B 75 375 147 HOH HOH . I 5 HOH B 76 376 114 HOH HOH . I 5 HOH B 77 377 143 HOH HOH . I 5 HOH B 78 378 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 8.011 23.115 -13.028 1 37.29 ? C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 6.626 23.314 -12.88 1 46.14 ? O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 8.602 22.553 -11.747 1 35.86 ? C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 9.269 23.573 -11.039 1 38.91 ? O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 9.585 21.472 -12.156 1 27.61 ? C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 10.453 21.158 -11.097 1 24.65 ? O3 GOL 202 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #