data_5HX8
#
_model_server_result.job_id            lE1ifRVv5y0bAh_Ze7QwGQ 
_model_server_result.datetime_utc      '2024-12-21 12:36:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1201}' 
#
_entry.id    5HX8 
#
_exptl.entry_id    5HX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              323.392 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)-1H-pyridin-2-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.6 
_cell.angle_gamma         90 
_cell.entry_id            5HX8 
_cell.length_a            42.76 
_cell.length_b            172.97 
_cell.length_c            44.72 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 181 A GLU 1033 1_555 A N PTR 182 A PTR 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C PTR 182 A PTR 1034 1_555 A N PTR 183 A PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 A C PTR 183 A PTR 1035 1_555 A N THR 184 A THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale4 B C GLU 181 B GLU 1033 1_555 B N PTR 182 B PTR 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale5 B C PTR 182 B PTR 1034 1_555 B N PTR 183 B PTR 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale6 B C PTR 183 B PTR 1035 1_555 B N THR 184 B THR 1036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
#
_chem_comp.formula           'C18 H21 N5 O' 
_chem_comp.formula_weight    323.392 
_chem_comp.id                66P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)-1H-pyridin-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-[(cis-4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)pyridin-2(1H)-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C16 C15 66P doub 1 n y 
C16 C17 66P sing 2 n y 
C15 C14 66P sing 3 n y 
C17 C12 66P doub 4 n y 
C14 C13 66P doub 5 n y 
C12 C13 66P sing 6 n y 
C12 N3 66P sing 7 n y 
C13 N4 66P sing 8 n y 
N3 C11 66P sing 9 n y 
N4 C11 66P doub 10 n y 
C11 C1 66P sing 11 n n 
O C 66P doub 12 n n 
C1 C 66P sing 13 n n 
C1 C2 66P doub 14 n n 
C N 66P sing 15 n n 
C10 C9 66P sing 16 n n 
C10 C5 66P sing 17 n n 
C9 C8 66P sing 18 n n 
N1 C2 66P sing 19 n n 
N1 C5 66P sing 20 n n 
C2 C3 66P sing 21 n n 
N C4 66P sing 22 n n 
C5 C6 66P sing 23 n n 
C3 C4 66P doub 24 n n 
C8 N2 66P sing 25 n n 
C8 C7 66P sing 26 n n 
C6 C7 66P sing 27 n n 
C3 H1 66P sing 28 n n 
C5 H3 66P sing 29 n n 
C7 H4 66P sing 30 n n 
C7 H5 66P sing 31 n n 
C9 H6 66P sing 32 n n 
C9 H7 66P sing 33 n n 
C10 H8 66P sing 34 n n 
C10 H9 66P sing 35 n n 
C15 H10 66P sing 36 n n 
N1 H12 66P sing 37 n n 
C8 H13 66P sing 38 n n 
N2 H14 66P sing 39 n n 
N2 H15 66P sing 40 n n 
C6 H17 66P sing 41 n n 
C6 H18 66P sing 42 n n 
C4 H19 66P sing 43 n n 
C14 H20 66P sing 44 n n 
C16 H21 66P sing 45 n n 
C17 H22 66P sing 46 n n 
N H2 66P sing 47 n n 
N3 H11 66P sing 48 n n 
#
_atom_sites.entry_id                     5HX8 
_atom_sites.fract_transf_matrix[1][1]    0.023386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001471 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005781 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 66P A 1 1201 1 66P MRK . 
D 2 66P B 1 1201 1 66P MRK . 
E 3 HOH A 1 1301 146 HOH HOH . 
E 3 HOH A 2 1302 48 HOH HOH . 
E 3 HOH A 3 1303 14 HOH HOH . 
E 3 HOH A 4 1304 90 HOH HOH . 
E 3 HOH A 5 1305 102 HOH HOH . 
E 3 HOH A 6 1306 60 HOH HOH . 
E 3 HOH A 7 1307 80 HOH HOH . 
E 3 HOH A 8 1308 145 HOH HOH . 
E 3 HOH A 9 1309 120 HOH HOH . 
E 3 HOH A 10 1310 108 HOH HOH . 
E 3 HOH A 11 1311 3 HOH HOH . 
E 3 HOH A 12 1312 12 HOH HOH . 
E 3 HOH A 13 1313 32 HOH HOH . 
E 3 HOH A 14 1314 125 HOH HOH . 
E 3 HOH A 15 1315 85 HOH HOH . 
E 3 HOH A 16 1316 104 HOH HOH . 
E 3 HOH A 17 1317 109 HOH HOH . 
E 3 HOH A 18 1318 25 HOH HOH . 
E 3 HOH A 19 1319 52 HOH HOH . 
E 3 HOH A 20 1320 41 HOH HOH . 
E 3 HOH A 21 1321 58 HOH HOH . 
E 3 HOH A 22 1322 115 HOH HOH . 
E 3 HOH A 23 1323 35 HOH HOH . 
E 3 HOH A 24 1324 76 HOH HOH . 
E 3 HOH A 25 1325 5 HOH HOH . 
E 3 HOH A 26 1326 141 HOH HOH . 
E 3 HOH A 27 1327 79 HOH HOH . 
E 3 HOH A 28 1328 72 HOH HOH . 
E 3 HOH A 29 1329 99 HOH HOH . 
E 3 HOH A 30 1330 21 HOH HOH . 
E 3 HOH A 31 1331 68 HOH HOH . 
E 3 HOH A 32 1332 117 HOH HOH . 
E 3 HOH A 33 1333 40 HOH HOH . 
E 3 HOH A 34 1334 66 HOH HOH . 
E 3 HOH A 35 1335 17 HOH HOH . 
E 3 HOH A 36 1336 100 HOH HOH . 
E 3 HOH A 37 1337 89 HOH HOH . 
E 3 HOH A 38 1338 27 HOH HOH . 
E 3 HOH A 39 1339 103 HOH HOH . 
E 3 HOH A 40 1340 134 HOH HOH . 
E 3 HOH A 41 1341 137 HOH HOH . 
E 3 HOH A 42 1342 74 HOH HOH . 
E 3 HOH A 43 1343 69 HOH HOH . 
E 3 HOH A 44 1344 53 HOH HOH . 
E 3 HOH A 45 1345 86 HOH HOH . 
E 3 HOH A 46 1346 136 HOH HOH . 
E 3 HOH A 47 1347 54 HOH HOH . 
E 3 HOH A 48 1348 122 HOH HOH . 
E 3 HOH A 49 1349 129 HOH HOH . 
E 3 HOH A 50 1350 116 HOH HOH . 
E 3 HOH A 51 1351 114 HOH HOH . 
E 3 HOH A 52 1352 62 HOH HOH . 
E 3 HOH A 53 1353 93 HOH HOH . 
E 3 HOH A 54 1354 71 HOH HOH . 
E 3 HOH A 55 1355 95 HOH HOH . 
E 3 HOH A 56 1356 144 HOH HOH . 
E 3 HOH A 57 1357 13 HOH HOH . 
E 3 HOH A 58 1358 126 HOH HOH . 
E 3 HOH A 59 1359 26 HOH HOH . 
E 3 HOH A 60 1360 70 HOH HOH . 
E 3 HOH A 61 1361 105 HOH HOH . 
E 3 HOH A 62 1362 94 HOH HOH . 
E 3 HOH A 63 1363 44 HOH HOH . 
E 3 HOH A 64 1364 127 HOH HOH . 
E 3 HOH A 65 1365 112 HOH HOH . 
E 3 HOH A 66 1366 92 HOH HOH . 
E 3 HOH A 67 1367 64 HOH HOH . 
F 3 HOH B 1 1301 142 HOH HOH . 
F 3 HOH B 2 1302 30 HOH HOH . 
F 3 HOH B 3 1303 91 HOH HOH . 
F 3 HOH B 4 1304 124 HOH HOH . 
F 3 HOH B 5 1305 11 HOH HOH . 
F 3 HOH B 6 1306 28 HOH HOH . 
F 3 HOH B 7 1307 78 HOH HOH . 
F 3 HOH B 8 1308 31 HOH HOH . 
F 3 HOH B 9 1309 131 HOH HOH . 
F 3 HOH B 10 1310 9 HOH HOH . 
F 3 HOH B 11 1311 59 HOH HOH . 
F 3 HOH B 12 1312 139 HOH HOH . 
F 3 HOH B 13 1313 96 HOH HOH . 
F 3 HOH B 14 1314 19 HOH HOH . 
F 3 HOH B 15 1315 75 HOH HOH . 
F 3 HOH B 16 1316 2 HOH HOH . 
F 3 HOH B 17 1317 63 HOH HOH . 
F 3 HOH B 18 1318 42 HOH HOH . 
F 3 HOH B 19 1319 56 HOH HOH . 
F 3 HOH B 20 1320 1 HOH HOH . 
F 3 HOH B 21 1321 107 HOH HOH . 
F 3 HOH B 22 1322 43 HOH HOH . 
F 3 HOH B 23 1323 6 HOH HOH . 
F 3 HOH B 24 1324 132 HOH HOH . 
F 3 HOH B 25 1325 39 HOH HOH . 
F 3 HOH B 26 1326 10 HOH HOH . 
F 3 HOH B 27 1327 83 HOH HOH . 
F 3 HOH B 28 1328 113 HOH HOH . 
F 3 HOH B 29 1329 65 HOH HOH . 
F 3 HOH B 30 1330 67 HOH HOH . 
F 3 HOH B 31 1331 23 HOH HOH . 
F 3 HOH B 32 1332 128 HOH HOH . 
F 3 HOH B 33 1333 8 HOH HOH . 
F 3 HOH B 34 1334 4 HOH HOH . 
F 3 HOH B 35 1335 46 HOH HOH . 
F 3 HOH B 36 1336 101 HOH HOH . 
F 3 HOH B 37 1337 7 HOH HOH . 
F 3 HOH B 38 1338 51 HOH HOH . 
F 3 HOH B 39 1339 118 HOH HOH . 
F 3 HOH B 40 1340 15 HOH HOH . 
F 3 HOH B 41 1341 18 HOH HOH . 
F 3 HOH B 42 1342 49 HOH HOH . 
F 3 HOH B 43 1343 119 HOH HOH . 
F 3 HOH B 44 1344 36 HOH HOH . 
F 3 HOH B 45 1345 77 HOH HOH . 
F 3 HOH B 46 1346 47 HOH HOH . 
F 3 HOH B 47 1347 73 HOH HOH . 
F 3 HOH B 48 1348 82 HOH HOH . 
F 3 HOH B 49 1349 138 HOH HOH . 
F 3 HOH B 50 1350 24 HOH HOH . 
F 3 HOH B 51 1351 33 HOH HOH . 
F 3 HOH B 52 1352 38 HOH HOH . 
F 3 HOH B 53 1353 130 HOH HOH . 
F 3 HOH B 54 1354 110 HOH HOH . 
F 3 HOH B 55 1355 61 HOH HOH . 
F 3 HOH B 56 1356 37 HOH HOH . 
F 3 HOH B 57 1357 34 HOH HOH . 
F 3 HOH B 58 1358 22 HOH HOH . 
F 3 HOH B 59 1359 97 HOH HOH . 
F 3 HOH B 60 1360 20 HOH HOH . 
F 3 HOH B 61 1361 106 HOH HOH . 
F 3 HOH B 62 1362 84 HOH HOH . 
F 3 HOH B 63 1363 133 HOH HOH . 
F 3 HOH B 64 1364 50 HOH HOH . 
F 3 HOH B 65 1365 29 HOH HOH . 
F 3 HOH B 66 1366 140 HOH HOH . 
F 3 HOH B 67 1367 121 HOH HOH . 
F 3 HOH B 68 1368 81 HOH HOH . 
F 3 HOH B 69 1369 55 HOH HOH . 
F 3 HOH B 70 1370 147 HOH HOH . 
F 3 HOH B 71 1371 111 HOH HOH . 
F 3 HOH B 72 1372 143 HOH HOH . 
F 3 HOH B 73 1373 98 HOH HOH . 
F 3 HOH B 74 1374 45 HOH HOH . 
F 3 HOH B 75 1375 57 HOH HOH . 
F 3 HOH B 76 1376 16 HOH HOH . 
F 3 HOH B 77 1377 135 HOH HOH . 
F 3 HOH B 78 1378 87 HOH HOH . 
F 3 HOH B 79 1379 88 HOH HOH . 
F 3 HOH B 80 1380 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 66P . . . C 2 5.871 57.839 0.587 1 33.39 ? C2 66P 1201 A 1 
HETATM 2 C C3 66P . . . C 2 4.634 58.002 1.259 1 33.03 ? C3 66P 1201 A 1 
HETATM 3 N N4 66P . . . C 2 8.497 57.773 -0.965 1 33.46 ? N4 66P 1201 A 1 
HETATM 4 C C5 66P . . . C 2 5.962 55.352 1.11 1 33.16 ? C5 66P 1201 A 1 
HETATM 5 C C7 66P . . . C 2 7.973 55.064 2.615 1 32.26 ? C7 66P 1201 A 1 
HETATM 6 C C9 66P . . . C 2 7.935 53.957 0.333 1 34.76 ? C9 66P 1201 A 1 
HETATM 7 C C10 66P . . . C 2 6.41 54.152 0.285 1 33.61 ? C10 66P 1201 A 1 
HETATM 8 C C11 66P . . . C 2 7.826 58.897 -0.775 1 34.67 ? C11 66P 1201 A 1 
HETATM 9 C C12 66P . . . C 2 9.544 59.51 -2.012 1 35.73 ? C12 66P 1201 A 1 
HETATM 10 C C13 66P . . . C 2 9.59 58.142 -1.754 1 34.86 ? C13 66P 1201 A 1 
HETATM 11 C C15 66P . . . C 2 11.64 58.012 -2.993 1 35.82 ? C15 66P 1201 A 1 
HETATM 12 O O 66P . . . C 2 6.358 61.343 -0.311 1 32.48 ? O 66P 1201 A 1 
HETATM 13 C C 66P . . . C 2 5.892 60.291 0.116 1 32.02 ? C 66P 1201 A 1 
HETATM 14 C C1 66P . . . C 2 6.518 58.988 0.001 1 32.64 ? C1 66P 1201 A 1 
HETATM 15 N N1 66P . . . C 2 6.45 56.594 0.511 1 34.46 ? N1 66P 1201 A 1 
HETATM 16 C C8 66P . . . C 2 8.417 53.861 1.78 1 33.62 ? C8 66P 1201 A 1 
HETATM 17 N N2 66P . . . C 2 9.906 53.738 1.812 1 33.13 ? N2 66P 1201 A 1 
HETATM 18 C C6 66P . . . C 2 6.454 55.231 2.548 1 30.75 ? C6 66P 1201 A 1 
HETATM 19 C C4 66P . . . C 2 4.07 59.224 1.338 1 34.21 ? C4 66P 1201 A 1 
HETATM 20 N N 66P . . . C 2 4.67 60.315 0.796 1 33.52 ? N 66P 1201 A 1 
HETATM 21 C C14 66P . . . C 2 10.641 57.373 -2.257 1 37.05 ? C14 66P 1201 A 1 
HETATM 22 C C16 66P . . . C 2 11.587 59.389 -3.235 1 35.6 ? C16 66P 1201 A 1 
HETATM 23 C C17 66P . . . C 2 10.529 60.156 -2.756 1 35.65 ? C17 66P 1201 A 1 
HETATM 24 N N3 66P . . . C 2 8.41 59.97 -1.374 1 35.99 ? N3 66P 1201 A 1 
#
_model_server_stats.io_time_ms              91 
_model_server_stats.parse_time_ms           98 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           1271 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           24 
#