data_5HXC # _model_server_result.job_id eAd7fTUf1s_5rNYm4T1huQ _model_server_result.datetime_utc '2024-11-14 17:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":419}' # _entry.id 5HXC # _exptl.entry_id 5HXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HXC _cell.length_a 49.754 _cell.length_b 72.56 _cell.length_c 95.775 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 S N N ? 7 T N N ? 7 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 47 A ALA 47 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A OG1 THR 50 A THR 50 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 A O THR 50 A THR 50 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc4 A OG SER 51 A SER 51 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc5 A OE2 GLU 54 A GLU 54 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc6 A OE1 GLU 54 A GLU 54 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc8 A OG SER 77 A SER 77 1_555 E NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 A O ILE 118 A ILE 118 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc10 A OD1 ASP 121 A ASP 121 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc11 A O GLY 122 A GLY 122 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc12 A OD2 ASP 127 A ASP 127 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc13 A O ALA 206 A ALA 206 1_555 E NA NA . A NA 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc14 A OG1 THR 209 A THR 209 1_555 E NA NA . A NA 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc15 A OG1 THR 209 A THR 209 1_555 E NA NA . A NA 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc16 A O THR 209 A THR 209 1_555 F NA NA . A NA 405 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc17 A O THR 209 A THR 209 1_555 F NA NA . A NA 405 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc18 A OG SER 210 A SER 210 1_555 E NA NA . A NA 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc19 A OE2 GLU 213 A GLU 213 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc20 A OE1 GLU 213 A GLU 213 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc21 A OE2 GLU 213 A GLU 213 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc22 A OG SER 236 A SER 236 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc23 B CA CA . A CA 401 1_555 S O25 OLC . A OLC 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc24 B CA CA . A CA 401 1_555 V O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 355 n n C10 C9 OLC doub 356 n n C10 C11 OLC sing 357 n n C9 C8 OLC sing 358 n n C17 C16 OLC sing 359 z n C11 C12 OLC sing 360 n n C8 C7 OLC sing 361 n n C24 C22 OLC sing 362 n n C24 O25 OLC sing 363 n n C16 C15 OLC sing 364 n n C12 C13 OLC sing 365 n n C7 C6 OLC sing 366 n n C15 C14 OLC sing 367 n n C13 C14 OLC sing 368 n n C6 C5 OLC sing 369 n n C5 C4 OLC sing 370 n n C4 C3 OLC sing 371 n n C3 C2 OLC sing 372 n n C2 C1 OLC sing 373 n n C21 C22 OLC sing 374 n n C21 O20 OLC sing 375 n n C1 O19 OLC doub 376 n n C1 O20 OLC sing 377 n n C22 O23 OLC sing 378 n n C18 H18 OLC sing 379 n n C18 H18A OLC sing 380 n n C18 H18B OLC sing 381 n n C10 H10 OLC sing 382 n n C9 H9 OLC sing 383 n n C17 H17 OLC sing 384 n n C17 H17A OLC sing 385 n n C11 H11 OLC sing 386 n n C11 H11A OLC sing 387 n n C8 H8 OLC sing 388 n n C8 H8A OLC sing 389 n n C24 H24 OLC sing 390 n n C24 H24A OLC sing 391 n n C16 H16 OLC sing 392 n n C16 H16A OLC sing 393 n n C12 H12 OLC sing 394 n n C12 H12A OLC sing 395 n n C7 H7 OLC sing 396 n n C7 H7A OLC sing 397 n n C15 H15 OLC sing 398 n n C15 H15A OLC sing 399 n n C13 H13 OLC sing 400 n n C13 H13A OLC sing 401 n n C6 H6 OLC sing 402 n n C6 H6A OLC sing 403 n n C14 H14 OLC sing 404 n n C14 H14A OLC sing 405 n n C5 H5 OLC sing 406 n n C5 H5A OLC sing 407 n n C4 H4 OLC sing 408 n n C4 H4A OLC sing 409 n n C3 H3 OLC sing 410 n n C3 H3A OLC sing 411 n n C2 H2 OLC sing 412 n n C2 H2A OLC sing 413 n n C21 H21 OLC sing 414 n n C21 H21A OLC sing 415 n n C22 H22 OLC sing 416 n n O25 HO25 OLC sing 417 n n O23 HO23 OLC sing 418 n n # _atom_sites.entry_id 5HXC _atom_sites.fract_transf_matrix[1][1] 0.020099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 2 CA CA . C 2 CA A 1 402 3 CA CA . D 3 NA A 1 403 2 NA NA . E 3 NA A 1 404 3 NA NA . F 3 NA A 1 405 4 NA NA . G 4 1PE A 1 406 5 1PE PEG . H 4 1PE A 1 407 8 1PE PEG . I 5 MYC A 1 408 1 MYC FAT . J 5 MYC A 1 409 4 MYC FAT . K 5 MYC A 1 410 11 MYC FAT . L 6 MYS A 1 411 12 MYS FAT . M 6 MYS A 1 412 14 MYS FAT . N 5 MYC A 1 413 15 MYC FAT . O 5 MYC A 1 414 16 MYC FAT . P 6 MYS A 1 415 20 MYS FAT . Q 5 MYC A 1 416 21 MYC FAT . R 5 MYC A 1 417 22 MYC FAT . S 7 OLC A 1 418 3 OLC MON . T 7 OLC A 1 419 4 OLC MON . U 7 OLC A 1 420 5 OLC MON . V 8 HOH A 1 501 15 HOH HOH . V 8 HOH A 2 502 16 HOH HOH . V 8 HOH A 3 503 67 HOH HOH . V 8 HOH A 4 504 8 HOH HOH . V 8 HOH A 5 505 3 HOH HOH . V 8 HOH A 6 506 6 HOH HOH . V 8 HOH A 7 507 7 HOH HOH . V 8 HOH A 8 508 38 HOH HOH . V 8 HOH A 9 509 52 HOH HOH . V 8 HOH A 10 510 48 HOH HOH . V 8 HOH A 11 511 57 HOH HOH . V 8 HOH A 12 512 50 HOH HOH . V 8 HOH A 13 513 17 HOH HOH . V 8 HOH A 14 514 10 HOH HOH . V 8 HOH A 15 515 55 HOH HOH . V 8 HOH A 16 516 66 HOH HOH . V 8 HOH A 17 517 36 HOH HOH . V 8 HOH A 18 518 14 HOH HOH . V 8 HOH A 19 519 23 HOH HOH . V 8 HOH A 20 520 19 HOH HOH . V 8 HOH A 21 521 11 HOH HOH . V 8 HOH A 22 522 54 HOH HOH . V 8 HOH A 23 523 24 HOH HOH . V 8 HOH A 24 524 58 HOH HOH . V 8 HOH A 25 525 27 HOH HOH . V 8 HOH A 26 526 1 HOH HOH . V 8 HOH A 27 527 22 HOH HOH . V 8 HOH A 28 528 21 HOH HOH . V 8 HOH A 29 529 4 HOH HOH . V 8 HOH A 30 530 60 HOH HOH . V 8 HOH A 31 531 61 HOH HOH . V 8 HOH A 32 532 9 HOH HOH . V 8 HOH A 33 533 68 HOH HOH . V 8 HOH A 34 534 51 HOH HOH . V 8 HOH A 35 535 13 HOH HOH . V 8 HOH A 36 536 18 HOH HOH . V 8 HOH A 37 537 35 HOH HOH . V 8 HOH A 38 538 12 HOH HOH . V 8 HOH A 39 539 40 HOH HOH . V 8 HOH A 40 540 28 HOH HOH . V 8 HOH A 41 541 2 HOH HOH . V 8 HOH A 42 542 44 HOH HOH . V 8 HOH A 43 543 30 HOH HOH . V 8 HOH A 44 544 49 HOH HOH . V 8 HOH A 45 545 5 HOH HOH . V 8 HOH A 46 546 45 HOH HOH . V 8 HOH A 47 547 53 HOH HOH . V 8 HOH A 48 548 34 HOH HOH . V 8 HOH A 49 549 42 HOH HOH . V 8 HOH A 50 550 20 HOH HOH . V 8 HOH A 51 551 39 HOH HOH . V 8 HOH A 52 552 29 HOH HOH . V 8 HOH A 53 553 59 HOH HOH . V 8 HOH A 54 554 56 HOH HOH . V 8 HOH A 55 555 41 HOH HOH . V 8 HOH A 56 556 32 HOH HOH . V 8 HOH A 57 557 25 HOH HOH . V 8 HOH A 58 558 65 HOH HOH . V 8 HOH A 59 559 63 HOH HOH . V 8 HOH A 60 560 43 HOH HOH . V 8 HOH A 61 561 64 HOH HOH . V 8 HOH A 62 562 46 HOH HOH . V 8 HOH A 63 563 62 HOH HOH . V 8 HOH A 64 564 47 HOH HOH . V 8 HOH A 65 565 37 HOH HOH . V 8 HOH A 66 566 26 HOH HOH . V 8 HOH A 67 567 31 HOH HOH . V 8 HOH A 68 568 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . T 7 13.724 22.759 27.5 1 47.98 ? C24 OLC 419 A 1 HETATM 2 C C2 OLC . . . T 7 17.437 20.039 27.34 1 67.32 ? C2 OLC 419 A 1 HETATM 3 C C21 OLC . . . T 7 14.607 20.439 27.595 1 64.19 ? C21 OLC 419 A 1 HETATM 4 C C1 OLC . . . T 7 16.342 18.986 27.601 1 79.93 ? C1 OLC 419 A 1 HETATM 5 C C22 OLC . . . T 7 14.469 21.753 28.38 1 58.58 ? C22 OLC 419 A 1 HETATM 6 O O19 OLC . . . T 7 16.42 17.855 27.121 1 78.83 ? O19 OLC 419 A 1 HETATM 7 O O25 OLC . . . T 7 13.544 23.984 28.213 1 56.56 ? O25 OLC 419 A 1 HETATM 8 O O23 OLC . . . T 7 13.776 21.556 29.621 1 72.29 ? O23 OLC 419 A 1 HETATM 9 O O20 OLC . . . T 7 15.279 19.419 28.34 1 71.75 ? O20 OLC 419 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #