data_5HXH # _model_server_result.job_id Iwa3YwnAYVppMsilSJtIQQ _model_server_result.datetime_utc '2024-11-15 04:05:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5HXH # _exptl.entry_id 5HXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.2 _cell.angle_gamma 90 _cell.entry_id 5HXH _cell.length_a 164.177 _cell.length_b 46.827 _cell.length_c 96.963 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 118 A ILE 118 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc2 A OD1 ASP 121 A ASP 121 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc3 A OD2 ASP 127 A ASP 127 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 B O ILE 118 B ILE 118 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 B OD1 ASP 121 B ASP 121 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc6 B OD2 ASP 121 B ASP 121 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc7 B OD2 ASP 127 B ASP 127 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5HXH _atom_sites.fract_transf_matrix[1][1] 0.006091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001769 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 1 CA CA . D 3 1PE A 1 402 1 1PE PEG . E 4 MYS A 1 403 1 MYS FAT . F 4 MYS A 1 404 3 MYS FAT . G 4 MYS A 1 405 4 MYS FAT . H 2 CA B 1 401 1 CA CA . I 3 1PE B 1 402 2 1PE PEG . J 3 1PE B 1 403 3 1PE PEG . K 3 1PE B 1 404 1 1PE PEG . L 5 OLC B 1 405 1 OLC MON . M 5 OLC B 1 406 1 OLC MON . N 4 MYS B 1 407 5 MYS FAT . O 6 HOH A 1 501 51 HOH HOH . O 6 HOH A 2 502 27 HOH HOH . O 6 HOH A 3 503 20 HOH HOH . O 6 HOH A 4 504 55 HOH HOH . O 6 HOH A 5 505 7 HOH HOH . O 6 HOH A 6 506 30 HOH HOH . O 6 HOH A 7 507 49 HOH HOH . O 6 HOH A 8 508 31 HOH HOH . O 6 HOH A 9 509 54 HOH HOH . O 6 HOH A 10 510 2 HOH HOH . O 6 HOH A 11 511 50 HOH HOH . O 6 HOH A 12 512 1 HOH HOH . O 6 HOH A 13 513 40 HOH HOH . O 6 HOH A 14 514 18 HOH HOH . O 6 HOH A 15 515 45 HOH HOH . O 6 HOH A 16 516 43 HOH HOH . O 6 HOH A 17 517 42 HOH HOH . O 6 HOH A 18 518 44 HOH HOH . O 6 HOH A 19 519 46 HOH HOH . O 6 HOH A 20 520 39 HOH HOH . O 6 HOH A 21 521 6 HOH HOH . O 6 HOH A 22 522 28 HOH HOH . O 6 HOH A 23 523 9 HOH HOH . O 6 HOH A 24 524 13 HOH HOH . O 6 HOH A 25 525 35 HOH HOH . O 6 HOH A 26 526 33 HOH HOH . O 6 HOH A 27 527 41 HOH HOH . O 6 HOH A 28 528 14 HOH HOH . O 6 HOH A 29 529 37 HOH HOH . O 6 HOH A 30 530 26 HOH HOH . O 6 HOH A 31 531 47 HOH HOH . O 6 HOH A 32 532 48 HOH HOH . O 6 HOH A 33 533 34 HOH HOH . P 6 HOH B 1 501 53 HOH HOH . P 6 HOH B 2 502 52 HOH HOH . P 6 HOH B 3 503 22 HOH HOH . P 6 HOH B 4 504 32 HOH HOH . P 6 HOH B 5 505 10 HOH HOH . P 6 HOH B 6 506 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . D 3 -71.482 -28.973 33.385 1 53.77 ? OH2 1PE 402 A 1 HETATM 2 C C12 1PE . . . D 3 -70.86 -29.406 32.171 1 53.78 ? C12 1PE 402 A 1 HETATM 3 C C22 1PE . . . D 3 -69.443 -28.831 32.086 1 34.86 ? C22 1PE 402 A 1 HETATM 4 O OH3 1PE . . . D 3 -68.809 -29.263 30.883 1 44.97 ? OH3 1PE 402 A 1 HETATM 5 C C13 1PE . . . D 3 -67.457 -30.929 31.981 1 38.14 ? C13 1PE 402 A 1 HETATM 6 C C23 1PE . . . D 3 -67.453 -29.652 31.137 1 38.72 ? C23 1PE 402 A 1 HETATM 7 O OH4 1PE . . . D 3 -66.125 -31.379 32.246 1 32.78 ? OH4 1PE 402 A 1 HETATM 8 C C14 1PE . . . D 3 -66.584 -32.462 34.355 1 39.7 ? C14 1PE 402 A 1 HETATM 9 C C24 1PE . . . D 3 -66.241 -32.66 32.878 1 38.1 ? C24 1PE 402 A 1 HETATM 10 O OH5 1PE . . . D 3 -66.741 -33.721 35.015 1 40.2 ? OH5 1PE 402 A 1 HETATM 11 C C15 1PE . . . D 3 -67.745 -34.26 37.187 1 61.44 ? C15 1PE 402 A 1 HETATM 12 C C25 1PE . . . D 3 -66.597 -33.566 36.435 1 56.11 ? C25 1PE 402 A 1 HETATM 13 O OH6 1PE . . . D 3 -69.024 -33.689 36.854 1 80.15 ? OH6 1PE 402 A 1 HETATM 14 C C16 1PE . . . D 3 -70.787 -32.181 37.632 1 55.09 ? C16 1PE 402 A 1 HETATM 15 C C26 1PE . . . D 3 -69.326 -32.626 37.777 1 67.78 ? C26 1PE 402 A 1 HETATM 16 O OH7 1PE . . . D 3 -71.126 -32.104 36.244 1 51.9 ? OH7 1PE 402 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #