data_5HXH # _model_server_result.job_id G0OA7rgV_Xoy_D03y-eKJg _model_server_result.datetime_utc '2024-11-15 03:55:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":406}' # _entry.id 5HXH # _exptl.entry_id 5HXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.2 _cell.angle_gamma 90 _cell.entry_id 5HXH _cell.length_a 164.177 _cell.length_b 46.827 _cell.length_c 96.963 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 118 A ILE 118 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc2 A OD1 ASP 121 A ASP 121 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc3 A OD2 ASP 127 A ASP 127 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc4 B O ILE 118 B ILE 118 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc5 B OD1 ASP 121 B ASP 121 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc6 B OD2 ASP 121 B ASP 121 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc7 B OD2 ASP 127 B ASP 127 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 320 n n C10 C9 OLC doub 321 n n C10 C11 OLC sing 322 n n C9 C8 OLC sing 323 n n C17 C16 OLC sing 324 z n C11 C12 OLC sing 325 n n C8 C7 OLC sing 326 n n C24 C22 OLC sing 327 n n C24 O25 OLC sing 328 n n C16 C15 OLC sing 329 n n C12 C13 OLC sing 330 n n C7 C6 OLC sing 331 n n C15 C14 OLC sing 332 n n C13 C14 OLC sing 333 n n C6 C5 OLC sing 334 n n C5 C4 OLC sing 335 n n C4 C3 OLC sing 336 n n C3 C2 OLC sing 337 n n C2 C1 OLC sing 338 n n C21 C22 OLC sing 339 n n C21 O20 OLC sing 340 n n C1 O19 OLC doub 341 n n C1 O20 OLC sing 342 n n C22 O23 OLC sing 343 n n C18 H18 OLC sing 344 n n C18 H18A OLC sing 345 n n C18 H18B OLC sing 346 n n C10 H10 OLC sing 347 n n C9 H9 OLC sing 348 n n C17 H17 OLC sing 349 n n C17 H17A OLC sing 350 n n C11 H11 OLC sing 351 n n C11 H11A OLC sing 352 n n C8 H8 OLC sing 353 n n C8 H8A OLC sing 354 n n C24 H24 OLC sing 355 n n C24 H24A OLC sing 356 n n C16 H16 OLC sing 357 n n C16 H16A OLC sing 358 n n C12 H12 OLC sing 359 n n C12 H12A OLC sing 360 n n C7 H7 OLC sing 361 n n C7 H7A OLC sing 362 n n C15 H15 OLC sing 363 n n C15 H15A OLC sing 364 n n C13 H13 OLC sing 365 n n C13 H13A OLC sing 366 n n C6 H6 OLC sing 367 n n C6 H6A OLC sing 368 n n C14 H14 OLC sing 369 n n C14 H14A OLC sing 370 n n C5 H5 OLC sing 371 n n C5 H5A OLC sing 372 n n C4 H4 OLC sing 373 n n C4 H4A OLC sing 374 n n C3 H3 OLC sing 375 n n C3 H3A OLC sing 376 n n C2 H2 OLC sing 377 n n C2 H2A OLC sing 378 n n C21 H21 OLC sing 379 n n C21 H21A OLC sing 380 n n C22 H22 OLC sing 381 n n O25 HO25 OLC sing 382 n n O23 HO23 OLC sing 383 n n # _atom_sites.entry_id 5HXH _atom_sites.fract_transf_matrix[1][1] 0.006091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001769 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 1 CA CA . D 3 1PE A 1 402 1 1PE PEG . E 4 MYS A 1 403 1 MYS FAT . F 4 MYS A 1 404 3 MYS FAT . G 4 MYS A 1 405 4 MYS FAT . H 2 CA B 1 401 1 CA CA . I 3 1PE B 1 402 2 1PE PEG . J 3 1PE B 1 403 3 1PE PEG . K 3 1PE B 1 404 1 1PE PEG . L 5 OLC B 1 405 1 OLC MON . M 5 OLC B 1 406 1 OLC MON . N 4 MYS B 1 407 5 MYS FAT . O 6 HOH A 1 501 51 HOH HOH . O 6 HOH A 2 502 27 HOH HOH . O 6 HOH A 3 503 20 HOH HOH . O 6 HOH A 4 504 55 HOH HOH . O 6 HOH A 5 505 7 HOH HOH . O 6 HOH A 6 506 30 HOH HOH . O 6 HOH A 7 507 49 HOH HOH . O 6 HOH A 8 508 31 HOH HOH . O 6 HOH A 9 509 54 HOH HOH . O 6 HOH A 10 510 2 HOH HOH . O 6 HOH A 11 511 50 HOH HOH . O 6 HOH A 12 512 1 HOH HOH . O 6 HOH A 13 513 40 HOH HOH . O 6 HOH A 14 514 18 HOH HOH . O 6 HOH A 15 515 45 HOH HOH . O 6 HOH A 16 516 43 HOH HOH . O 6 HOH A 17 517 42 HOH HOH . O 6 HOH A 18 518 44 HOH HOH . O 6 HOH A 19 519 46 HOH HOH . O 6 HOH A 20 520 39 HOH HOH . O 6 HOH A 21 521 6 HOH HOH . O 6 HOH A 22 522 28 HOH HOH . O 6 HOH A 23 523 9 HOH HOH . O 6 HOH A 24 524 13 HOH HOH . O 6 HOH A 25 525 35 HOH HOH . O 6 HOH A 26 526 33 HOH HOH . O 6 HOH A 27 527 41 HOH HOH . O 6 HOH A 28 528 14 HOH HOH . O 6 HOH A 29 529 37 HOH HOH . O 6 HOH A 30 530 26 HOH HOH . O 6 HOH A 31 531 47 HOH HOH . O 6 HOH A 32 532 48 HOH HOH . O 6 HOH A 33 533 34 HOH HOH . P 6 HOH B 1 501 53 HOH HOH . P 6 HOH B 2 502 52 HOH HOH . P 6 HOH B 3 503 22 HOH HOH . P 6 HOH B 4 504 32 HOH HOH . P 6 HOH B 5 505 10 HOH HOH . P 6 HOH B 6 506 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . M 5 -35.531 -11.463 28.452 1 59.33 ? C10 OLC 406 B 1 HETATM 2 C C9 OLC . . . M 5 -36.016 -12.561 27.5 1 72.82 ? C9 OLC 406 B 1 HETATM 3 C C11 OLC . . . M 5 -34.967 -11.949 29.79 1 46.24 ? C11 OLC 406 B 1 HETATM 4 C C8 OLC . . . M 5 -35.871 -13.995 28.016 1 58.35 ? C8 OLC 406 B 1 HETATM 5 C C24 OLC . . . M 5 -36.156 -18.468 35.437 1 58.1 ? C24 OLC 406 B 1 HETATM 6 C C12 OLC . . . M 5 -34.167 -10.823 30.447 1 36.19 ? C12 OLC 406 B 1 HETATM 7 C C7 OLC . . . M 5 -36.359 -14.975 26.946 1 46.21 ? C7 OLC 406 B 1 HETATM 8 C C13 OLC . . . M 5 -33.606 -11.309 31.785 1 29.42 ? C13 OLC 406 B 1 HETATM 9 C C6 OLC . . . M 5 -36.166 -16.409 27.442 1 52.5 ? C6 OLC 406 B 1 HETATM 10 C C5 OLC . . . M 5 -37.063 -16.654 28.658 1 45.86 ? C5 OLC 406 B 1 HETATM 11 C C4 OLC . . . M 5 -36.903 -18.101 29.127 1 54.29 ? C4 OLC 406 B 1 HETATM 12 C C3 OLC . . . M 5 -37.654 -18.296 30.446 1 51.68 ? C3 OLC 406 B 1 HETATM 13 C C2 OLC . . . M 5 -37.634 -19.777 30.831 1 45.8 ? C2 OLC 406 B 1 HETATM 14 C C21 OLC . . . M 5 -36.745 -19.993 33.547 1 52.94 ? C21 OLC 406 B 1 HETATM 15 C C1 OLC . . . M 5 -36.238 -20.156 31.331 1 57.28 ? C1 OLC 406 B 1 HETATM 16 C C22 OLC . . . M 5 -35.598 -19.283 34.269 1 60.98 ? C22 OLC 406 B 1 HETATM 17 O O19 OLC . . . M 5 -35.233 -19.861 30.688 1 66.07 ? O19 OLC 406 B 1 HETATM 18 O O25 OLC . . . M 5 -35.09 -17.772 36.087 1 56.09 ? O25 OLC 406 B 1 HETATM 19 O O23 OLC . . . M 5 -34.671 -20.253 34.763 1 70.97 ? O23 OLC 406 B 1 HETATM 20 O O20 OLC . . . M 5 -36.214 -20.827 32.514 1 55.49 ? O20 OLC 406 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 20 #