data_5HXR # _model_server_result.job_id b8YKmktDaW5hA7Dxs0eBXQ _model_server_result.datetime_utc '2024-11-14 06:45:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":411}' # _entry.id 5HXR # _exptl.entry_id 5HXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.415 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HXR _cell.length_a 49.7 _cell.length_b 72.522 _cell.length_c 96.942 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 50 A THR 50 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 A OG SER 51 A SER 51 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.188 ? metalc ? metalc3 A OE1 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.146 ? metalc ? metalc4 A OE1 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 A OE2 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 A O ILE 118 A ILE 118 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc8 A OD1 ASP 121 A ASP 121 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 A O GLY 122 A GLY 122 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc10 A OD2 ASP 127 A ASP 127 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc11 A O THR 209 A THR 209 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.266 ? metalc ? metalc12 A OE1 GLU 213 A GLU 213 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.416 ? metalc ? metalc13 A OE2 GLU 213 A GLU 213 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.899 ? metalc ? metalc14 A OE2 GLU 213 A GLU 213 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.373 ? metalc ? metalc15 A OD1 ASP 240 A ASP 240 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.521 ? metalc ? metalc16 A OD2 ASP 240 A ASP 240 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.846 ? metalc ? metalc17 B CA CA . A CA 401 1_555 E O23 OLC . A OLC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc18 B CA CA . A CA 401 1_555 P O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc19 C CA CA . A CA 402 1_555 P O HOH . A HOH 506 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.502 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 237 n n C1 H11 MYS sing 238 n n C1 H12 MYS sing 239 n n C1 H13 MYS sing 240 n n C2 C3 MYS sing 241 n n C2 H21 MYS sing 242 n n C2 H22 MYS sing 243 n n C3 C4 MYS sing 244 n n C3 H31 MYS sing 245 n n C3 H32 MYS sing 246 n n C4 C5 MYS sing 247 n n C4 H41 MYS sing 248 n n C4 H42 MYS sing 249 n n C5 C6 MYS sing 250 n n C5 H51 MYS sing 251 n n C5 H52 MYS sing 252 n n C6 C7 MYS sing 253 n n C6 H61 MYS sing 254 n n C6 H62 MYS sing 255 n n C7 C8 MYS sing 256 n n C7 H71 MYS sing 257 n n C7 H72 MYS sing 258 n n C8 C9 MYS sing 259 n n C8 H81 MYS sing 260 n n C8 H82 MYS sing 261 n n C9 C10 MYS sing 262 n n C9 H91 MYS sing 263 n n C9 H92 MYS sing 264 n n C10 C11 MYS sing 265 n n C10 H101 MYS sing 266 n n C10 H102 MYS sing 267 n n C11 C12 MYS sing 268 n n C11 H111 MYS sing 269 n n C11 H112 MYS sing 270 n n C12 C13 MYS sing 271 n n C12 H121 MYS sing 272 n n C12 H122 MYS sing 273 n n C13 C14 MYS sing 274 n n C13 H131 MYS sing 275 n n C13 H132 MYS sing 276 n n C14 C15 MYS sing 277 n n C14 H141 MYS sing 278 n n C14 H142 MYS sing 279 n n C15 H151 MYS sing 280 n n C15 H152 MYS sing 281 n n C15 H153 MYS sing 282 n n # _atom_sites.entry_id 5HXR _atom_sites.fract_transf_matrix[1][1] 0.020121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 2 CA CA . C 2 CA A 1 402 1 CA CA . D 3 OLC A 1 403 1 OLC MON . E 3 OLC A 1 404 2 OLC MON . F 4 MYS A 1 405 8 MYS FAT . G 4 MYS A 1 406 15 MYS FAT . H 4 MYS A 1 407 20 MYS FAT . I 4 MYS A 1 408 24 MYS FAT . J 4 MYS A 1 409 25 MYS FAT . K 4 MYS A 1 410 26 MYS FAT . L 4 MYS A 1 411 28 MYS FAT . M 4 MYS A 1 412 29 MYS FAT . N 4 MYS A 1 413 30 MYS FAT . O 5 PGE A 1 414 1 PGE PEG . P 6 HOH A 1 501 10 HOH HOH . P 6 HOH A 2 502 1 HOH HOH . P 6 HOH A 3 503 3 HOH HOH . P 6 HOH A 4 504 7 HOH HOH . P 6 HOH A 5 505 16 HOH HOH . P 6 HOH A 6 506 15 HOH HOH . P 6 HOH A 7 507 13 HOH HOH . P 6 HOH A 8 508 2 HOH HOH . P 6 HOH A 9 509 4 HOH HOH . P 6 HOH A 10 510 14 HOH HOH . P 6 HOH A 11 511 5 HOH HOH . P 6 HOH A 12 512 6 HOH HOH . P 6 HOH A 13 513 9 HOH HOH . P 6 HOH A 14 514 12 HOH HOH . P 6 HOH A 15 515 8 HOH HOH . P 6 HOH A 16 516 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MYS . . . L 4 -11.736 29.42 34.123 1 92.42 ? C2 MYS 411 A 1 HETATM 2 C C3 MYS . . . L 4 -13.019 28.968 33.428 1 87.08 ? C3 MYS 411 A 1 HETATM 3 C C4 MYS . . . L 4 -13.067 29.479 31.983 1 76.19 ? C4 MYS 411 A 1 HETATM 4 C C5 MYS . . . L 4 -14.374 28.977 31.365 1 80.79 ? C5 MYS 411 A 1 HETATM 5 C C6 MYS . . . L 4 -14.543 29.414 29.906 1 87.97 ? C6 MYS 411 A 1 HETATM 6 C C7 MYS . . . L 4 -13.384 28.879 29.063 1 84.18 ? C7 MYS 411 A 1 HETATM 7 C C8 MYS . . . L 4 -13.593 29.262 27.595 1 84.23 ? C8 MYS 411 A 1 HETATM 8 C C9 MYS . . . L 4 -12.421 28.729 26.769 1 83.54 ? C9 MYS 411 A 1 HETATM 9 C C10 MYS . . . L 4 -12.634 29.039 25.286 1 75.8 ? C10 MYS 411 A 1 HETATM 10 C C11 MYS . . . L 4 -11.435 28.503 24.491 1 81.34 ? C11 MYS 411 A 1 HETATM 11 C C12 MYS . . . L 4 -11.478 28.667 22.948 1 76.65 ? C12 MYS 411 A 1 HETATM 12 C C13 MYS . . . L 4 -12.589 27.911 22.167 1 80.75 ? C13 MYS 411 A 1 HETATM 13 C C14 MYS . . . L 4 -14.049 28.273 22.474 1 84.99 ? C14 MYS 411 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #