data_5HXR # _model_server_result.job_id 4YRSTAcz72qVA7-Wx5xkBQ _model_server_result.datetime_utc '2024-11-14 06:35:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":414}' # _entry.id 5HXR # _exptl.entry_id 5HXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HXR _cell.length_a 49.7 _cell.length_b 72.522 _cell.length_c 96.942 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 50 A THR 50 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.49 ? metalc ? metalc2 A OG SER 51 A SER 51 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.188 ? metalc ? metalc3 A OE1 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.146 ? metalc ? metalc4 A OE1 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 A OE2 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 A O ILE 118 A ILE 118 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc8 A OD1 ASP 121 A ASP 121 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 A O GLY 122 A GLY 122 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc10 A OD2 ASP 127 A ASP 127 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc11 A O THR 209 A THR 209 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.266 ? metalc ? metalc12 A OE1 GLU 213 A GLU 213 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.416 ? metalc ? metalc13 A OE2 GLU 213 A GLU 213 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.899 ? metalc ? metalc14 A OE2 GLU 213 A GLU 213 1_555 C CA CA . A CA 402 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.373 ? metalc ? metalc15 A OD1 ASP 240 A ASP 240 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.521 ? metalc ? metalc16 A OD2 ASP 240 A ASP 240 1_555 C CA CA . A CA 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.846 ? metalc ? metalc17 B CA CA . A CA 401 1_555 E O23 OLC . A OLC 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc18 B CA CA . A CA 401 1_555 P O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc19 C CA CA . A CA 402 1_555 P O HOH . A HOH 506 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.502 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 347 n n C1 C2 PGE sing 348 n n C1 H1 PGE sing 349 n n C1 H12 PGE sing 350 n n O1 HO1 PGE sing 351 n n C2 O2 PGE sing 352 n n C2 H2 PGE sing 353 n n C2 H22 PGE sing 354 n n O2 C3 PGE sing 355 n n C3 C4 PGE sing 356 n n C3 H3 PGE sing 357 n n C3 H32 PGE sing 358 n n C4 O3 PGE sing 359 n n C4 H4 PGE sing 360 n n C4 H42 PGE sing 361 n n O4 C6 PGE sing 362 n n O4 HO4 PGE sing 363 n n C6 C5 PGE sing 364 n n C6 H6 PGE sing 365 n n C6 H62 PGE sing 366 n n C5 O3 PGE sing 367 n n C5 H5 PGE sing 368 n n C5 H52 PGE sing 369 n n # _atom_sites.entry_id 5HXR _atom_sites.fract_transf_matrix[1][1] 0.020121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 2 CA CA . C 2 CA A 1 402 1 CA CA . D 3 OLC A 1 403 1 OLC MON . E 3 OLC A 1 404 2 OLC MON . F 4 MYS A 1 405 8 MYS FAT . G 4 MYS A 1 406 15 MYS FAT . H 4 MYS A 1 407 20 MYS FAT . I 4 MYS A 1 408 24 MYS FAT . J 4 MYS A 1 409 25 MYS FAT . K 4 MYS A 1 410 26 MYS FAT . L 4 MYS A 1 411 28 MYS FAT . M 4 MYS A 1 412 29 MYS FAT . N 4 MYS A 1 413 30 MYS FAT . O 5 PGE A 1 414 1 PGE PEG . P 6 HOH A 1 501 10 HOH HOH . P 6 HOH A 2 502 1 HOH HOH . P 6 HOH A 3 503 3 HOH HOH . P 6 HOH A 4 504 7 HOH HOH . P 6 HOH A 5 505 16 HOH HOH . P 6 HOH A 6 506 15 HOH HOH . P 6 HOH A 7 507 13 HOH HOH . P 6 HOH A 8 508 2 HOH HOH . P 6 HOH A 9 509 4 HOH HOH . P 6 HOH A 10 510 14 HOH HOH . P 6 HOH A 11 511 5 HOH HOH . P 6 HOH A 12 512 6 HOH HOH . P 6 HOH A 13 513 9 HOH HOH . P 6 HOH A 14 514 12 HOH HOH . P 6 HOH A 15 515 8 HOH HOH . P 6 HOH A 16 516 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . O 5 14.451 30.869 9.746 1 71.22 ? C1 PGE 414 A 1 HETATM 2 O O1 PGE . . . O 5 14.288 32.249 9.411 1 80.09 ? O1 PGE 414 A 1 HETATM 3 C C2 PGE . . . O 5 14.178 30.673 11.238 1 65.15 ? C2 PGE 414 A 1 HETATM 4 O O2 PGE . . . O 5 12.84 31.081 11.535 1 72.8 ? O2 PGE 414 A 1 HETATM 5 C C3 PGE . . . O 5 12.648 31.046 12.95 1 65.43 ? C3 PGE 414 A 1 HETATM 6 C C4 PGE . . . O 5 11.263 31.596 13.296 1 71.52 ? C4 PGE 414 A 1 HETATM 7 O O4 PGE . . . O 5 10.784 35.752 12.736 1 89.33 ? O4 PGE 414 A 1 HETATM 8 C C6 PGE . . . O 5 9.672 34.854 12.673 1 78.65 ? C6 PGE 414 A 1 HETATM 9 C C5 PGE . . . O 5 10.008 33.561 13.419 1 77.79 ? C5 PGE 414 A 1 HETATM 10 O O3 PGE . . . O 5 11.155 32.944 12.829 1 82.86 ? O3 PGE 414 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #