data_5HXS # _model_server_result.job_id hprBDUYR07yoW4fBke-XAA _model_server_result.datetime_utc '2024-11-23 03:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":412}' # _entry.id 5HXS # _exptl.entry_id 5HXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HXS _cell.length_a 49.516 _cell.length_b 72.353 _cell.length_c 96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 50 A THR 50 1_555 B SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc2 A OE1 GLU 54 A GLU 54 1_555 B SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 A OE2 GLU 54 A GLU 54 1_555 B SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 A O ILE 118 A ILE 118 1_555 C SR SR . A SR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc5 A OD1 ASP 121 A ASP 121 1_555 C SR SR . A SR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc6 A O GLY 122 A GLY 122 1_555 C SR SR . A SR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc7 A OD2 ASP 127 A ASP 127 1_555 C SR SR . A SR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc8 A O THR 209 A THR 209 1_555 B SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc9 A OE1 GLU 213 A GLU 213 1_555 B SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc10 A OE2 GLU 213 A GLU 213 1_555 B SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc11 C SR SR . A SR 402 1_555 N O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 283 n n C10 C9 OLC doub 284 n n C10 C11 OLC sing 285 n n C9 C8 OLC sing 286 n n C17 C16 OLC sing 287 z n C11 C12 OLC sing 288 n n C8 C7 OLC sing 289 n n C24 C22 OLC sing 290 n n C24 O25 OLC sing 291 n n C16 C15 OLC sing 292 n n C12 C13 OLC sing 293 n n C7 C6 OLC sing 294 n n C15 C14 OLC sing 295 n n C13 C14 OLC sing 296 n n C6 C5 OLC sing 297 n n C5 C4 OLC sing 298 n n C4 C3 OLC sing 299 n n C3 C2 OLC sing 300 n n C2 C1 OLC sing 301 n n C21 C22 OLC sing 302 n n C21 O20 OLC sing 303 n n C1 O19 OLC doub 304 n n C1 O20 OLC sing 305 n n C22 O23 OLC sing 306 n n C18 H18 OLC sing 307 n n C18 H18A OLC sing 308 n n C18 H18B OLC sing 309 n n C10 H10 OLC sing 310 n n C9 H9 OLC sing 311 n n C17 H17 OLC sing 312 n n C17 H17A OLC sing 313 n n C11 H11 OLC sing 314 n n C11 H11A OLC sing 315 n n C8 H8 OLC sing 316 n n C8 H8A OLC sing 317 n n C24 H24 OLC sing 318 n n C24 H24A OLC sing 319 n n C16 H16 OLC sing 320 n n C16 H16A OLC sing 321 n n C12 H12 OLC sing 322 n n C12 H12A OLC sing 323 n n C7 H7 OLC sing 324 n n C7 H7A OLC sing 325 n n C15 H15 OLC sing 326 n n C15 H15A OLC sing 327 n n C13 H13 OLC sing 328 n n C13 H13A OLC sing 329 n n C6 H6 OLC sing 330 n n C6 H6A OLC sing 331 n n C14 H14 OLC sing 332 n n C14 H14A OLC sing 333 n n C5 H5 OLC sing 334 n n C5 H5A OLC sing 335 n n C4 H4 OLC sing 336 n n C4 H4A OLC sing 337 n n C3 H3 OLC sing 338 n n C3 H3A OLC sing 339 n n C2 H2 OLC sing 340 n n C2 H2A OLC sing 341 n n C21 H21 OLC sing 342 n n C21 H21A OLC sing 343 n n C22 H22 OLC sing 344 n n O25 HO25 OLC sing 345 n n O23 HO23 OLC sing 346 n n # _atom_sites.entry_id 5HXS _atom_sites.fract_transf_matrix[1][1] 0.020195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013821 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SR A 1 401 3 SR SR . C 2 SR A 1 402 4 SR SR . D 3 MYS A 1 403 5 MYS FAT . E 3 MYS A 1 404 18 MYS FAT . F 3 MYS A 1 405 19 MYS FAT . G 3 MYS A 1 406 22 MYS FAT . H 3 MYS A 1 407 23 MYS FAT . I 3 MYS A 1 408 25 MYS FAT . J 3 MYS A 1 409 26 MYS FAT . K 4 TOE A 1 410 1 TOE PEG . L 5 OLC A 1 411 1 OLC MON . M 5 OLC A 1 412 2 OLC MON . N 6 HOH A 1 501 4 HOH HOH . N 6 HOH A 2 502 1 HOH HOH . N 6 HOH A 3 503 3 HOH HOH . N 6 HOH A 4 504 6 HOH HOH . N 6 HOH A 5 505 7 HOH HOH . N 6 HOH A 6 506 2 HOH HOH . N 6 HOH A 7 507 9 HOH HOH . N 6 HOH A 8 508 10 HOH HOH . N 6 HOH A 9 509 5 HOH HOH . N 6 HOH A 10 510 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . M 5 3.998 20.863 2.375 1 75.68 ? C24 OLC 412 A 1 HETATM 2 C C2 OLC . . . M 5 6.041 15.494 1.442 1 57.47 ? C2 OLC 412 A 1 HETATM 3 C C21 OLC . . . M 5 3.943 18.374 2.575 1 69.16 ? C21 OLC 412 A 1 HETATM 4 C C1 OLC . . . M 5 5.199 16.77 1.411 1 78.81 ? C1 OLC 412 A 1 HETATM 5 C C22 OLC . . . M 5 4.855 19.6 2.428 1 60.13 ? C22 OLC 412 A 1 HETATM 6 O O19 OLC . . . M 5 4.983 17.346 0.345 1 93.93 ? O19 OLC 412 A 1 HETATM 7 O O25 OLC . . . M 5 4.847 22.001 2.233 1 79.44 ? O25 OLC 412 A 1 HETATM 8 O O23 OLC . . . M 5 5.749 19.683 3.539 1 60.96 ? O23 OLC 412 A 1 HETATM 9 O O20 OLC . . . M 5 4.716 17.166 2.627 1 78.3 ? O20 OLC 412 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #