data_5HXZ # _model_server_result.job_id VLQQyEbgbo9NdXbcQZuyGg _model_server_result.datetime_utc '2024-11-25 09:54:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hxz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":403}' # _entry.id 5HXZ # _exptl.entry_id 5HXZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HXZ _cell.length_a 81.63 _cell.length_b 83.732 _cell.length_c 215.102 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HXZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N ? 4 K N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 321 A GLU 301 1_555 H NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc2 A O ALA 370 A ALA 350 1_555 H NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc3 A O GLN 373 A GLN 353 1_555 H NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc4 A O PRO 375 A PRO 355 1_555 H NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc5 A O GLY 378 A GLY 358 1_555 H NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc6 B OE2 GLU 321 B GLU 301 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc7 B O ALA 370 B ALA 350 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc8 B O GLN 373 B GLN 353 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc9 B O GLY 374 B GLY 354 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc10 B O PRO 375 B PRO 355 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc11 B O GLY 378 B GLY 358 1_555 J NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc12 C OE2 GLU 321 C GLU 301 1_555 K NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc13 C O ALA 370 C ALA 350 1_555 K NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc14 C O GLN 373 C GLN 353 1_555 K NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc15 C O PRO 375 C PRO 355 1_555 K NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc16 C O GLY 378 C GLY 358 1_555 K NA NA . C NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc17 D OE2 GLU 321 D GLU 301 1_555 N NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc18 D O ALA 370 D ALA 350 1_555 N NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc19 D O GLN 373 D GLN 353 1_555 N NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc20 D O GLY 374 D GLY 354 1_555 N NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? metalc ? metalc21 D O PRO 375 D PRO 355 1_555 N NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? metalc ? metalc22 D O GLY 378 D GLY 358 1_555 N NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.16 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5HXZ _atom_sites.fract_transf_matrix[1][1] 0.01225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011943 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004649 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CL A 1 401 1 CL CL . F 2 CL A 1 402 2 CL CL . G 3 MHA A 1 403 1 MHA MHA . H 4 NA A 1 404 401 NA NA . I 2 CL B 1 401 3 CL CL . J 4 NA B 1 402 402 NA NA . K 4 NA C 1 401 403 NA NA . L 2 CL D 1 401 4 CL CL . M 3 MHA D 1 402 3 MHA MHA . N 4 NA D 1 403 404 NA NA . O 5 HOH A 1 501 101 HOH HOH . O 5 HOH A 2 502 105 HOH HOH . O 5 HOH A 3 503 50 HOH HOH . O 5 HOH A 4 504 41 HOH HOH . O 5 HOH A 5 505 31 HOH HOH . O 5 HOH A 6 506 94 HOH HOH . O 5 HOH A 7 507 39 HOH HOH . O 5 HOH A 8 508 96 HOH HOH . O 5 HOH A 9 509 103 HOH HOH . O 5 HOH A 10 510 28 HOH HOH . O 5 HOH A 11 511 14 HOH HOH . O 5 HOH A 12 512 64 HOH HOH . O 5 HOH A 13 513 37 HOH HOH . O 5 HOH A 14 514 47 HOH HOH . O 5 HOH A 15 515 59 HOH HOH . O 5 HOH A 16 516 22 HOH HOH . O 5 HOH A 17 517 74 HOH HOH . O 5 HOH A 18 518 71 HOH HOH . O 5 HOH A 19 519 122 HOH HOH . O 5 HOH A 20 520 131 HOH HOH . O 5 HOH A 21 521 36 HOH HOH . O 5 HOH A 22 522 146 HOH HOH . O 5 HOH A 23 523 143 HOH HOH . O 5 HOH A 24 524 27 HOH HOH . O 5 HOH A 25 525 137 HOH HOH . O 5 HOH A 26 526 139 HOH HOH . O 5 HOH A 27 527 16 HOH HOH . O 5 HOH A 28 528 24 HOH HOH . O 5 HOH A 29 529 68 HOH HOH . O 5 HOH A 30 530 107 HOH HOH . O 5 HOH A 31 531 89 HOH HOH . O 5 HOH A 32 532 29 HOH HOH . O 5 HOH A 33 533 157 HOH HOH . O 5 HOH A 34 534 72 HOH HOH . O 5 HOH A 35 535 8 HOH HOH . O 5 HOH A 36 536 5 HOH HOH . O 5 HOH A 37 537 144 HOH HOH . O 5 HOH A 38 538 151 HOH HOH . O 5 HOH A 39 539 63 HOH HOH . O 5 HOH A 40 540 4 HOH HOH . O 5 HOH A 41 541 66 HOH HOH . O 5 HOH A 42 542 159 HOH HOH . O 5 HOH A 43 543 18 HOH HOH . O 5 HOH A 44 544 30 HOH HOH . O 5 HOH A 45 545 153 HOH HOH . O 5 HOH A 46 546 138 HOH HOH . O 5 HOH A 47 547 65 HOH HOH . O 5 HOH A 48 548 69 HOH HOH . O 5 HOH A 49 549 62 HOH HOH . O 5 HOH A 50 550 61 HOH HOH . P 5 HOH B 1 501 54 HOH HOH . P 5 HOH B 2 502 91 HOH HOH . P 5 HOH B 3 503 128 HOH HOH . P 5 HOH B 4 504 102 HOH HOH . P 5 HOH B 5 505 33 HOH HOH . P 5 HOH B 6 506 160 HOH HOH . P 5 HOH B 7 507 97 HOH HOH . P 5 HOH B 8 508 3 HOH HOH . P 5 HOH B 9 509 147 HOH HOH . P 5 HOH B 10 510 44 HOH HOH . P 5 HOH B 11 511 85 HOH HOH . P 5 HOH B 12 512 98 HOH HOH . P 5 HOH B 13 513 129 HOH HOH . P 5 HOH B 14 514 15 HOH HOH . P 5 HOH B 15 515 10 HOH HOH . P 5 HOH B 16 516 93 HOH HOH . P 5 HOH B 17 517 76 HOH HOH . P 5 HOH B 18 518 52 HOH HOH . P 5 HOH B 19 519 77 HOH HOH . P 5 HOH B 20 520 32 HOH HOH . P 5 HOH B 21 521 35 HOH HOH . P 5 HOH B 22 522 134 HOH HOH . P 5 HOH B 23 523 120 HOH HOH . P 5 HOH B 24 524 118 HOH HOH . P 5 HOH B 25 525 81 HOH HOH . P 5 HOH B 26 526 42 HOH HOH . P 5 HOH B 27 527 141 HOH HOH . P 5 HOH B 28 528 70 HOH HOH . P 5 HOH B 29 529 43 HOH HOH . P 5 HOH B 30 530 104 HOH HOH . P 5 HOH B 31 531 80 HOH HOH . P 5 HOH B 32 532 83 HOH HOH . P 5 HOH B 33 533 23 HOH HOH . P 5 HOH B 34 534 95 HOH HOH . P 5 HOH B 35 535 17 HOH HOH . P 5 HOH B 36 536 20 HOH HOH . P 5 HOH B 37 537 111 HOH HOH . P 5 HOH B 38 538 86 HOH HOH . P 5 HOH B 39 539 13 HOH HOH . P 5 HOH B 40 540 2 HOH HOH . P 5 HOH B 41 541 19 HOH HOH . P 5 HOH B 42 542 87 HOH HOH . P 5 HOH B 43 543 100 HOH HOH . P 5 HOH B 44 544 75 HOH HOH . P 5 HOH B 45 545 90 HOH HOH . P 5 HOH B 46 546 55 HOH HOH . P 5 HOH B 47 547 88 HOH HOH . P 5 HOH B 48 548 162 HOH HOH . P 5 HOH B 49 549 84 HOH HOH . P 5 HOH B 50 550 140 HOH HOH . Q 5 HOH C 1 501 21 HOH HOH . Q 5 HOH C 2 502 45 HOH HOH . Q 5 HOH C 3 503 25 HOH HOH . Q 5 HOH C 4 504 6 HOH HOH . Q 5 HOH C 5 505 126 HOH HOH . Q 5 HOH C 6 506 92 HOH HOH . Q 5 HOH C 7 507 34 HOH HOH . Q 5 HOH C 8 508 163 HOH HOH . Q 5 HOH C 9 509 67 HOH HOH . Q 5 HOH C 10 510 46 HOH HOH . Q 5 HOH C 11 511 145 HOH HOH . Q 5 HOH C 12 512 110 HOH HOH . Q 5 HOH C 13 513 130 HOH HOH . Q 5 HOH C 14 514 135 HOH HOH . Q 5 HOH C 15 515 119 HOH HOH . Q 5 HOH C 16 516 113 HOH HOH . Q 5 HOH C 17 517 112 HOH HOH . Q 5 HOH C 18 518 109 HOH HOH . Q 5 HOH C 19 519 152 HOH HOH . Q 5 HOH C 20 520 58 HOH HOH . Q 5 HOH C 21 521 117 HOH HOH . Q 5 HOH C 22 522 99 HOH HOH . Q 5 HOH C 23 523 1 HOH HOH . Q 5 HOH C 24 524 161 HOH HOH . Q 5 HOH C 25 525 125 HOH HOH . Q 5 HOH C 26 526 82 HOH HOH . Q 5 HOH C 27 527 108 HOH HOH . R 5 HOH D 1 501 142 HOH HOH . R 5 HOH D 2 502 79 HOH HOH . R 5 HOH D 3 503 133 HOH HOH . R 5 HOH D 4 504 132 HOH HOH . R 5 HOH D 5 505 127 HOH HOH . R 5 HOH D 6 506 123 HOH HOH . R 5 HOH D 7 507 56 HOH HOH . R 5 HOH D 8 508 149 HOH HOH . R 5 HOH D 9 509 73 HOH HOH . R 5 HOH D 10 510 9 HOH HOH . R 5 HOH D 11 511 7 HOH HOH . R 5 HOH D 12 512 148 HOH HOH . R 5 HOH D 13 513 11 HOH HOH . R 5 HOH D 14 514 48 HOH HOH . R 5 HOH D 15 515 115 HOH HOH . R 5 HOH D 16 516 12 HOH HOH . R 5 HOH D 17 517 38 HOH HOH . R 5 HOH D 18 518 114 HOH HOH . R 5 HOH D 19 519 40 HOH HOH . R 5 HOH D 20 520 26 HOH HOH . R 5 HOH D 21 521 106 HOH HOH . R 5 HOH D 22 522 150 HOH HOH . R 5 HOH D 23 523 156 HOH HOH . R 5 HOH D 24 524 78 HOH HOH . R 5 HOH D 25 525 57 HOH HOH . R 5 HOH D 26 526 49 HOH HOH . R 5 HOH D 27 527 121 HOH HOH . R 5 HOH D 28 528 124 HOH HOH . R 5 HOH D 29 529 154 HOH HOH . R 5 HOH D 30 530 53 HOH HOH . R 5 HOH D 31 531 158 HOH HOH . R 5 HOH D 32 532 155 HOH HOH . R 5 HOH D 33 533 136 HOH HOH . R 5 HOH D 34 534 116 HOH HOH . R 5 HOH D 35 535 60 HOH HOH . R 5 HOH D 36 536 51 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.826 _atom_site.Cartn_y 29.651 _atom_site.Cartn_z -31.625 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #