data_5HY1
#
_model_server_result.job_id            G0spcO6sQh51NwuXp5wMrQ 
_model_server_result.datetime_utc      '2024-11-01 21:35:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hy1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5HY1 
#
_exptl.entry_id    5HY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              129.074 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,3,5-triazine-2,4,6-triol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HY1 
_cell.length_a            69.403 
_cell.length_b            82.356 
_cell.length_c            114.552 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 138.806 164.712 0 
3 'crystal symmetry operation' 3_755 -x+2,y,-z -1 0 0 0 1 0 0 0 -1 138.806 0 0 
4 'crystal symmetry operation' 4_575 x,-y+2,-z 1 0 0 0 -1 0 0 0 -1 0 164.712 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 321 A GLU 301 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc2 A O ALA 370 A ALA 350 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc3 A O GLN 373 A GLN 353 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.697 ? 
metalc ? metalc4 A O GLY 374 A GLY 354 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
metalc ? metalc5 A O PRO 375 A PRO 355 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? 
metalc ? metalc6 A O GLY 378 A GLY 358 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? 
#
_chem_comp.formula           'C3 H3 N3 O3' 
_chem_comp.formula_weight    129.074 
_chem_comp.id                WDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,3,5-triazine-2,4,6-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Cyanuric Acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAB CAH WDL sing 376 n n 
CAH NAE WDL doub 377 n y 
CAH N6 WDL sing 378 n y 
CAI OAC WDL sing 379 n n 
CAI NAF WDL sing 380 n y 
CAI N6 WDL doub 381 n y 
NAF CAG WDL doub 382 n y 
CAG OAA WDL sing 383 n n 
CAG NAE WDL sing 384 n y 
OAB HAB WDL sing 385 n n 
OAC HAC WDL sing 386 n n 
OAA HAA WDL sing 387 n n 
#
_atom_sites.entry_id                     5HY1 
_atom_sites.fract_transf_matrix[1][1]    0.014409 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012142 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00873 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 WDL A 1 401 1 WDL UNL . 
C 3 NA A 1 402 1 NA NA . 
D 4 CL A 1 403 1 CL CL . 
E 4 CL A 1 404 2 CL CL . 
F 4 CL A 1 405 3 CL CL . 
G 5 HOH A 1 501 191 HOH HOH . 
G 5 HOH A 2 502 92 HOH HOH . 
G 5 HOH A 3 503 72 HOH HOH . 
G 5 HOH A 4 504 41 HOH HOH . 
G 5 HOH A 5 505 15 HOH HOH . 
G 5 HOH A 6 506 89 HOH HOH . 
G 5 HOH A 7 507 5 HOH HOH . 
G 5 HOH A 8 508 153 HOH HOH . 
G 5 HOH A 9 509 175 HOH HOH . 
G 5 HOH A 10 510 180 HOH HOH . 
G 5 HOH A 11 511 27 HOH HOH . 
G 5 HOH A 12 512 172 HOH HOH . 
G 5 HOH A 13 513 70 HOH HOH . 
G 5 HOH A 14 514 112 HOH HOH . 
G 5 HOH A 15 515 111 HOH HOH . 
G 5 HOH A 16 516 194 HOH HOH . 
G 5 HOH A 17 517 114 HOH HOH . 
G 5 HOH A 18 518 35 HOH HOH . 
G 5 HOH A 19 519 82 HOH HOH . 
G 5 HOH A 20 520 12 HOH HOH . 
G 5 HOH A 21 521 136 HOH HOH . 
G 5 HOH A 22 522 210 HOH HOH . 
G 5 HOH A 23 523 73 HOH HOH . 
G 5 HOH A 24 524 162 HOH HOH . 
G 5 HOH A 25 525 71 HOH HOH . 
G 5 HOH A 26 526 116 HOH HOH . 
G 5 HOH A 27 527 65 HOH HOH . 
G 5 HOH A 28 528 189 HOH HOH . 
G 5 HOH A 29 529 38 HOH HOH . 
G 5 HOH A 30 530 203 HOH HOH . 
G 5 HOH A 31 531 91 HOH HOH . 
G 5 HOH A 32 532 39 HOH HOH . 
G 5 HOH A 33 533 119 HOH HOH . 
G 5 HOH A 34 534 137 HOH HOH . 
G 5 HOH A 35 535 78 HOH HOH . 
G 5 HOH A 36 536 51 HOH HOH . 
G 5 HOH A 37 537 160 HOH HOH . 
G 5 HOH A 38 538 16 HOH HOH . 
G 5 HOH A 39 539 1 HOH HOH . 
G 5 HOH A 40 540 182 HOH HOH . 
G 5 HOH A 41 541 96 HOH HOH . 
G 5 HOH A 42 542 64 HOH HOH . 
G 5 HOH A 43 543 10 HOH HOH . 
G 5 HOH A 44 544 166 HOH HOH . 
G 5 HOH A 45 545 49 HOH HOH . 
G 5 HOH A 46 546 30 HOH HOH . 
G 5 HOH A 47 547 79 HOH HOH . 
G 5 HOH A 48 548 104 HOH HOH . 
G 5 HOH A 49 549 90 HOH HOH . 
G 5 HOH A 50 550 56 HOH HOH . 
G 5 HOH A 51 551 43 HOH HOH . 
G 5 HOH A 52 552 13 HOH HOH . 
G 5 HOH A 53 553 122 HOH HOH . 
G 5 HOH A 54 554 211 HOH HOH . 
G 5 HOH A 55 555 178 HOH HOH . 
G 5 HOH A 56 556 58 HOH HOH . 
G 5 HOH A 57 557 23 HOH HOH . 
G 5 HOH A 58 558 174 HOH HOH . 
G 5 HOH A 59 559 59 HOH HOH . 
G 5 HOH A 60 560 219 HOH HOH . 
G 5 HOH A 61 561 138 HOH HOH . 
G 5 HOH A 62 562 20 HOH HOH . 
G 5 HOH A 63 563 45 HOH HOH . 
G 5 HOH A 64 564 155 HOH HOH . 
G 5 HOH A 65 565 84 HOH HOH . 
G 5 HOH A 66 566 7 HOH HOH . 
G 5 HOH A 67 567 140 HOH HOH . 
G 5 HOH A 68 568 54 HOH HOH . 
G 5 HOH A 69 569 55 HOH HOH . 
G 5 HOH A 70 570 33 HOH HOH . 
G 5 HOH A 71 571 113 HOH HOH . 
G 5 HOH A 72 572 74 HOH HOH . 
G 5 HOH A 73 573 115 HOH HOH . 
G 5 HOH A 74 574 57 HOH HOH . 
G 5 HOH A 75 575 77 HOH HOH . 
G 5 HOH A 76 576 97 HOH HOH . 
G 5 HOH A 77 577 101 HOH HOH . 
G 5 HOH A 78 578 173 HOH HOH . 
G 5 HOH A 79 579 87 HOH HOH . 
G 5 HOH A 80 580 204 HOH HOH . 
G 5 HOH A 81 581 88 HOH HOH . 
G 5 HOH A 82 582 179 HOH HOH . 
G 5 HOH A 83 583 125 HOH HOH . 
G 5 HOH A 84 584 157 HOH HOH . 
G 5 HOH A 85 585 102 HOH HOH . 
G 5 HOH A 86 586 127 HOH HOH . 
G 5 HOH A 87 587 32 HOH HOH . 
G 5 HOH A 88 588 107 HOH HOH . 
G 5 HOH A 89 589 142 HOH HOH . 
G 5 HOH A 90 590 18 HOH HOH . 
G 5 HOH A 91 591 221 HOH HOH . 
G 5 HOH A 92 592 110 HOH HOH . 
G 5 HOH A 93 593 50 HOH HOH . 
G 5 HOH A 94 594 75 HOH HOH . 
G 5 HOH A 95 595 117 HOH HOH . 
G 5 HOH A 96 596 129 HOH HOH . 
G 5 HOH A 97 597 80 HOH HOH . 
G 5 HOH A 98 598 17 HOH HOH . 
G 5 HOH A 99 599 2 HOH HOH . 
G 5 HOH A 100 600 34 HOH HOH . 
G 5 HOH A 101 601 158 HOH HOH . 
G 5 HOH A 102 602 26 HOH HOH . 
G 5 HOH A 103 603 66 HOH HOH . 
G 5 HOH A 104 604 8 HOH HOH . 
G 5 HOH A 105 605 94 HOH HOH . 
G 5 HOH A 106 606 196 HOH HOH . 
G 5 HOH A 107 607 135 HOH HOH . 
G 5 HOH A 108 608 201 HOH HOH . 
G 5 HOH A 109 609 167 HOH HOH . 
G 5 HOH A 110 610 68 HOH HOH . 
G 5 HOH A 111 611 118 HOH HOH . 
G 5 HOH A 112 612 171 HOH HOH . 
G 5 HOH A 113 613 19 HOH HOH . 
G 5 HOH A 114 614 22 HOH HOH . 
G 5 HOH A 115 615 48 HOH HOH . 
G 5 HOH A 116 616 81 HOH HOH . 
G 5 HOH A 117 617 147 HOH HOH . 
G 5 HOH A 118 618 139 HOH HOH . 
G 5 HOH A 119 619 47 HOH HOH . 
G 5 HOH A 120 620 120 HOH HOH . 
G 5 HOH A 121 621 146 HOH HOH . 
G 5 HOH A 122 622 187 HOH HOH . 
G 5 HOH A 123 623 152 HOH HOH . 
G 5 HOH A 124 624 29 HOH HOH . 
G 5 HOH A 125 625 121 HOH HOH . 
G 5 HOH A 126 626 148 HOH HOH . 
G 5 HOH A 127 627 4 HOH HOH . 
G 5 HOH A 128 628 145 HOH HOH . 
G 5 HOH A 129 629 44 HOH HOH . 
G 5 HOH A 130 630 60 HOH HOH . 
G 5 HOH A 131 631 124 HOH HOH . 
G 5 HOH A 132 632 128 HOH HOH . 
G 5 HOH A 133 633 103 HOH HOH . 
G 5 HOH A 134 634 98 HOH HOH . 
G 5 HOH A 135 635 63 HOH HOH . 
G 5 HOH A 136 636 93 HOH HOH . 
G 5 HOH A 137 637 76 HOH HOH . 
G 5 HOH A 138 638 9 HOH HOH . 
G 5 HOH A 139 639 209 HOH HOH . 
G 5 HOH A 140 640 21 HOH HOH . 
G 5 HOH A 141 641 52 HOH HOH . 
G 5 HOH A 142 642 149 HOH HOH . 
G 5 HOH A 143 643 67 HOH HOH . 
G 5 HOH A 144 644 3 HOH HOH . 
G 5 HOH A 145 645 183 HOH HOH . 
G 5 HOH A 146 646 25 HOH HOH . 
G 5 HOH A 147 647 100 HOH HOH . 
G 5 HOH A 148 648 168 HOH HOH . 
G 5 HOH A 149 649 161 HOH HOH . 
G 5 HOH A 150 650 69 HOH HOH . 
G 5 HOH A 151 651 28 HOH HOH . 
G 5 HOH A 152 652 95 HOH HOH . 
G 5 HOH A 153 653 225 HOH HOH . 
G 5 HOH A 154 654 11 HOH HOH . 
G 5 HOH A 155 655 106 HOH HOH . 
G 5 HOH A 156 656 6 HOH HOH . 
G 5 HOH A 157 657 109 HOH HOH . 
G 5 HOH A 158 658 159 HOH HOH . 
G 5 HOH A 159 659 222 HOH HOH . 
G 5 HOH A 160 660 206 HOH HOH . 
G 5 HOH A 161 661 176 HOH HOH . 
G 5 HOH A 162 662 144 HOH HOH . 
G 5 HOH A 163 663 36 HOH HOH . 
G 5 HOH A 164 664 217 HOH HOH . 
G 5 HOH A 165 665 216 HOH HOH . 
G 5 HOH A 166 666 37 HOH HOH . 
G 5 HOH A 167 667 61 HOH HOH . 
G 5 HOH A 168 668 31 HOH HOH . 
G 5 HOH A 169 669 53 HOH HOH . 
G 5 HOH A 170 670 208 HOH HOH . 
G 5 HOH A 171 671 169 HOH HOH . 
G 5 HOH A 172 672 42 HOH HOH . 
G 5 HOH A 173 673 188 HOH HOH . 
G 5 HOH A 174 674 62 HOH HOH . 
G 5 HOH A 175 675 212 HOH HOH . 
G 5 HOH A 176 676 181 HOH HOH . 
G 5 HOH A 177 677 24 HOH HOH . 
G 5 HOH A 178 678 154 HOH HOH . 
G 5 HOH A 179 679 134 HOH HOH . 
G 5 HOH A 180 680 202 HOH HOH . 
G 5 HOH A 181 681 198 HOH HOH . 
G 5 HOH A 182 682 14 HOH HOH . 
G 5 HOH A 183 683 163 HOH HOH . 
G 5 HOH A 184 684 126 HOH HOH . 
G 5 HOH A 185 685 177 HOH HOH . 
G 5 HOH A 186 686 165 HOH HOH . 
G 5 HOH A 187 687 207 HOH HOH . 
G 5 HOH A 188 688 224 HOH HOH . 
G 5 HOH A 189 689 83 HOH HOH . 
G 5 HOH A 190 690 46 HOH HOH . 
G 5 HOH A 191 691 130 HOH HOH . 
G 5 HOH A 192 692 226 HOH HOH . 
G 5 HOH A 193 693 164 HOH HOH . 
G 5 HOH A 194 694 218 HOH HOH . 
G 5 HOH A 195 695 184 HOH HOH . 
G 5 HOH A 196 696 199 HOH HOH . 
G 5 HOH A 197 697 150 HOH HOH . 
G 5 HOH A 198 698 99 HOH HOH . 
G 5 HOH A 199 699 86 HOH HOH . 
G 5 HOH A 200 700 192 HOH HOH . 
G 5 HOH A 201 701 213 HOH HOH . 
G 5 HOH A 202 702 40 HOH HOH . 
G 5 HOH A 203 703 193 HOH HOH . 
G 5 HOH A 204 704 205 HOH HOH . 
G 5 HOH A 205 705 105 HOH HOH . 
G 5 HOH A 206 706 108 HOH HOH . 
G 5 HOH A 207 707 132 HOH HOH . 
G 5 HOH A 208 708 215 HOH HOH . 
G 5 HOH A 209 709 185 HOH HOH . 
G 5 HOH A 210 710 220 HOH HOH . 
G 5 HOH A 211 711 186 HOH HOH . 
G 5 HOH A 212 712 151 HOH HOH . 
G 5 HOH A 213 713 141 HOH HOH . 
G 5 HOH A 214 714 190 HOH HOH . 
G 5 HOH A 215 715 131 HOH HOH . 
G 5 HOH A 216 716 195 HOH HOH . 
G 5 HOH A 217 717 123 HOH HOH . 
G 5 HOH A 218 718 214 HOH HOH . 
G 5 HOH A 219 719 200 HOH HOH . 
G 5 HOH A 220 720 133 HOH HOH . 
G 5 HOH A 221 721 156 HOH HOH . 
G 5 HOH A 222 722 197 HOH HOH . 
G 5 HOH A 223 723 143 HOH HOH . 
G 5 HOH A 224 724 223 HOH HOH . 
G 5 HOH A 225 725 85 HOH HOH . 
G 5 HOH A 226 726 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N NAE WDL . . . B 2 79.622 91.963 10.137 1 33.76 ? NAE WDL 401 A 1 
HETATM 2 C CAH WDL . . . B 2 78.329 92.287 10.285 1 27.25 ? CAH WDL 401 A 1 
HETATM 3 O OAB WDL . . . B 2 77.611 91.577 11.241 1 16.76 ? OAB WDL 401 A 1 
HETATM 4 N N6 WDL . . . B 2 77.661 93.205 9.583 1 29.01 ? N6 WDL 401 A 1 
HETATM 5 C CAI WDL . . . B 2 78.421 93.853 8.685 1 29.29 ? CAI WDL 401 A 1 
HETATM 6 N NAF WDL . . . B 2 79.71 93.645 8.453 1 31.22 ? NAF WDL 401 A 1 
HETATM 7 O OAC WDL . . . B 2 77.855 94.851 7.917 1 22.98 ? OAC WDL 401 A 1 
HETATM 8 C CAG WDL . . . B 2 80.249 92.689 9.21 1 31.2 ? CAG WDL 401 A 1 
HETATM 9 O OAA WDL . . . B 2 81.593 92.483 9.006 1 31.08 ? OAA WDL 401 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#