data_5HYA # _model_server_result.job_id sl_4DaiQTXz1QjwUThLqqA _model_server_result.datetime_utc '2024-11-26 19:08:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":415}' # _entry.id 5HYA # _exptl.entry_id 5HYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HYA _cell.length_a 49.49 _cell.length_b 72.879 _cell.length_c 96.206 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 47 A ALA 47 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OG1 THR 50 A THR 50 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A O THR 50 A THR 50 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A OG SER 51 A SER 51 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 A OG SER 77 A SER 77 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc9 A O ILE 118 A ILE 118 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 A OD1 ASP 121 A ASP 121 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc11 A O GLY 122 A GLY 122 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 A OD2 ASP 127 A ASP 127 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc13 A O ALA 206 A ALA 206 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 A O THR 209 A THR 209 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 A OG1 THR 209 A THR 209 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 A OG SER 210 A SER 210 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc17 A OE2 GLU 213 A GLU 213 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc18 A OE1 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc19 A OE2 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc20 A OG SER 236 A SER 236 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc21 E CA CA . A CA 404 1_555 J O25 OLC . A OLC 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc22 E CA CA . A CA 404 1_555 Y O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5HYA _atom_sites.fract_transf_matrix[1][1] 0.020206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 2 NA A 1 402 2 NA NA . D 2 NA A 1 403 1 NA NA . E 3 CA A 1 404 1 CA CA . F 4 ACT A 1 405 1 ACT ACT . G 4 ACT A 1 406 1 ACT ACT . H 4 ACT A 1 407 1 ACT ACT . I 4 ACT A 1 408 1 ACT ACT . J 5 OLC A 1 409 1 OLC MON . K 5 OLC A 1 410 1 OLC MON . L 5 OLC A 1 411 1 OLC MON . M 6 MYS A 1 412 1 MYS FAT . N 6 MYS A 1 413 1 MYS FAT . O 6 MYS A 1 414 1 MYS FAT . P 7 1PE A 1 415 1 1PE PEG . Q 6 MYS A 1 416 1 MYS FAT . R 6 MYS A 1 417 1 MYS FAT . S 6 MYS A 1 418 1 MYS FAT . T 6 MYS A 1 419 1 MYS FAT . U 6 MYS A 1 420 1 MYS FAT . V 6 MYS A 1 421 1 MYS FAT . W 5 OLC A 1 422 1 OLC MON . X 5 OLC A 1 423 1 OLC MON . Y 8 HOH A 1 501 96 HOH HOH . Y 8 HOH A 2 502 77 HOH HOH . Y 8 HOH A 3 503 97 HOH HOH . Y 8 HOH A 4 504 12 HOH HOH . Y 8 HOH A 5 505 53 HOH HOH . Y 8 HOH A 6 506 71 HOH HOH . Y 8 HOH A 7 507 6 HOH HOH . Y 8 HOH A 8 508 100 HOH HOH . Y 8 HOH A 9 509 76 HOH HOH . Y 8 HOH A 10 510 26 HOH HOH . Y 8 HOH A 11 511 36 HOH HOH . Y 8 HOH A 12 512 11 HOH HOH . Y 8 HOH A 13 513 18 HOH HOH . Y 8 HOH A 14 514 50 HOH HOH . Y 8 HOH A 15 515 1 HOH HOH . Y 8 HOH A 16 516 83 HOH HOH . Y 8 HOH A 17 517 10 HOH HOH . Y 8 HOH A 18 518 15 HOH HOH . Y 8 HOH A 19 519 79 HOH HOH . Y 8 HOH A 20 520 16 HOH HOH . Y 8 HOH A 21 521 13 HOH HOH . Y 8 HOH A 22 522 75 HOH HOH . Y 8 HOH A 23 523 41 HOH HOH . Y 8 HOH A 24 524 84 HOH HOH . Y 8 HOH A 25 525 32 HOH HOH . Y 8 HOH A 26 526 3 HOH HOH . Y 8 HOH A 27 527 22 HOH HOH . Y 8 HOH A 28 528 51 HOH HOH . Y 8 HOH A 29 529 9 HOH HOH . Y 8 HOH A 30 530 4 HOH HOH . Y 8 HOH A 31 531 23 HOH HOH . Y 8 HOH A 32 532 14 HOH HOH . Y 8 HOH A 33 533 25 HOH HOH . Y 8 HOH A 34 534 46 HOH HOH . Y 8 HOH A 35 535 21 HOH HOH . Y 8 HOH A 36 536 24 HOH HOH . Y 8 HOH A 37 537 2 HOH HOH . Y 8 HOH A 38 538 31 HOH HOH . Y 8 HOH A 39 539 88 HOH HOH . Y 8 HOH A 40 540 57 HOH HOH . Y 8 HOH A 41 541 59 HOH HOH . Y 8 HOH A 42 542 45 HOH HOH . Y 8 HOH A 43 543 82 HOH HOH . Y 8 HOH A 44 544 55 HOH HOH . Y 8 HOH A 45 545 27 HOH HOH . Y 8 HOH A 46 546 7 HOH HOH . Y 8 HOH A 47 547 37 HOH HOH . Y 8 HOH A 48 548 34 HOH HOH . Y 8 HOH A 49 549 42 HOH HOH . Y 8 HOH A 50 550 94 HOH HOH . Y 8 HOH A 51 551 61 HOH HOH . Y 8 HOH A 52 552 8 HOH HOH . Y 8 HOH A 53 553 66 HOH HOH . Y 8 HOH A 54 554 17 HOH HOH . Y 8 HOH A 55 555 43 HOH HOH . Y 8 HOH A 56 556 64 HOH HOH . Y 8 HOH A 57 557 20 HOH HOH . Y 8 HOH A 58 558 70 HOH HOH . Y 8 HOH A 59 559 29 HOH HOH . Y 8 HOH A 60 560 67 HOH HOH . Y 8 HOH A 61 561 38 HOH HOH . Y 8 HOH A 62 562 28 HOH HOH . Y 8 HOH A 63 563 5 HOH HOH . Y 8 HOH A 64 564 54 HOH HOH . Y 8 HOH A 65 565 19 HOH HOH . Y 8 HOH A 66 566 93 HOH HOH . Y 8 HOH A 67 567 98 HOH HOH . Y 8 HOH A 68 568 60 HOH HOH . Y 8 HOH A 69 569 99 HOH HOH . Y 8 HOH A 70 570 89 HOH HOH . Y 8 HOH A 71 571 44 HOH HOH . Y 8 HOH A 72 572 87 HOH HOH . Y 8 HOH A 73 573 49 HOH HOH . Y 8 HOH A 74 574 35 HOH HOH . Y 8 HOH A 75 575 78 HOH HOH . Y 8 HOH A 76 576 63 HOH HOH . Y 8 HOH A 77 577 85 HOH HOH . Y 8 HOH A 78 578 40 HOH HOH . Y 8 HOH A 79 579 47 HOH HOH . Y 8 HOH A 80 580 86 HOH HOH . Y 8 HOH A 81 581 62 HOH HOH . Y 8 HOH A 82 582 56 HOH HOH . Y 8 HOH A 83 583 69 HOH HOH . Y 8 HOH A 84 584 52 HOH HOH . Y 8 HOH A 85 585 33 HOH HOH . Y 8 HOH A 86 586 81 HOH HOH . Y 8 HOH A 87 587 90 HOH HOH . Y 8 HOH A 88 588 65 HOH HOH . Y 8 HOH A 89 589 68 HOH HOH . Y 8 HOH A 90 590 95 HOH HOH . Y 8 HOH A 91 591 73 HOH HOH . Y 8 HOH A 92 592 30 HOH HOH . Y 8 HOH A 93 593 58 HOH HOH . Y 8 HOH A 94 594 74 HOH HOH . Y 8 HOH A 95 595 48 HOH HOH . Y 8 HOH A 96 596 91 HOH HOH . Y 8 HOH A 97 597 39 HOH HOH . Y 8 HOH A 98 598 92 HOH HOH . Y 8 HOH A 99 599 72 HOH HOH . Y 8 HOH A 100 600 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . P 7 10.162 35.076 11.992 1 47.43 ? OH2 1PE 415 A 1 HETATM 2 C C12 1PE . . . P 7 10.867 34.73 13.184 1 42.43 ? C12 1PE 415 A 1 HETATM 3 C C22 1PE . . . P 7 10.494 33.291 13.61 1 41.85 ? C22 1PE 415 A 1 HETATM 4 O OH3 1PE . . . P 7 11.274 32.379 12.862 1 36.31 ? OH3 1PE 415 A 1 HETATM 5 C C13 1PE . . . P 7 12.736 30.435 12.86 1 27.95 ? C13 1PE 415 A 1 HETATM 6 C C23 1PE . . . P 7 12.134 31.578 13.673 1 36.05 ? C23 1PE 415 A 1 HETATM 7 O OH4 1PE . . . P 7 13.44 31.014 11.779 1 32.16 ? OH4 1PE 415 A 1 HETATM 8 C C14 1PE . . . P 7 15.384 31.052 10.38 1 34.88 ? C14 1PE 415 A 1 HETATM 9 C C24 1PE . . . P 7 14.472 30.189 11.218 1 36.05 ? C24 1PE 415 A 1 HETATM 10 O OH5 1PE . . . P 7 14.577 31.789 9.419 1 45.61 ? OH5 1PE 415 A 1 HETATM 11 C C15 1PE . . . P 7 14.431 33.346 7.521 1 45.81 ? C15 1PE 415 A 1 HETATM 12 C C25 1PE . . . P 7 15.361 32.512 8.441 1 50.72 ? C25 1PE 415 A 1 HETATM 13 O OH6 1PE . . . P 7 13.667 34.248 8.333 1 53.56 ? OH6 1PE 415 A 1 HETATM 14 C C16 1PE . . . P 7 12.242 36.184 8.549 1 44.72 ? C16 1PE 415 A 1 HETATM 15 C C26 1PE . . . P 7 13.142 35.379 7.614 1 49.81 ? C26 1PE 415 A 1 HETATM 16 O OH7 1PE . . . P 7 12.755 36.091 9.878 1 54.24 ? OH7 1PE 415 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #