data_5HYA # _model_server_result.job_id ajnC1mNU9lnOu6BMaju8fg _model_server_result.datetime_utc '2024-11-23 03:46:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":419}' # _entry.id 5HYA # _exptl.entry_id 5HYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.415 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HYA _cell.length_a 49.49 _cell.length_b 72.879 _cell.length_c 96.206 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 N N N ? 6 O N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 47 A ALA 47 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OG1 THR 50 A THR 50 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A O THR 50 A THR 50 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A OG SER 51 A SER 51 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 A OG SER 77 A SER 77 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc9 A O ILE 118 A ILE 118 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 A OD1 ASP 121 A ASP 121 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc11 A O GLY 122 A GLY 122 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 A OD2 ASP 127 A ASP 127 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc13 A O ALA 206 A ALA 206 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 A O THR 209 A THR 209 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 A OG1 THR 209 A THR 209 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 A OG SER 210 A SER 210 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc17 A OE2 GLU 213 A GLU 213 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc18 A OE1 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc19 A OE2 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc20 A OG SER 236 A SER 236 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc21 E CA CA . A CA 404 1_555 J O25 OLC . A OLC 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc22 E CA CA . A CA 404 1_555 Y O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 280 n n C1 H11 MYS sing 281 n n C1 H12 MYS sing 282 n n C1 H13 MYS sing 283 n n C2 C3 MYS sing 284 n n C2 H21 MYS sing 285 n n C2 H22 MYS sing 286 n n C3 C4 MYS sing 287 n n C3 H31 MYS sing 288 n n C3 H32 MYS sing 289 n n C4 C5 MYS sing 290 n n C4 H41 MYS sing 291 n n C4 H42 MYS sing 292 n n C5 C6 MYS sing 293 n n C5 H51 MYS sing 294 n n C5 H52 MYS sing 295 n n C6 C7 MYS sing 296 n n C6 H61 MYS sing 297 n n C6 H62 MYS sing 298 n n C7 C8 MYS sing 299 n n C7 H71 MYS sing 300 n n C7 H72 MYS sing 301 n n C8 C9 MYS sing 302 n n C8 H81 MYS sing 303 n n C8 H82 MYS sing 304 n n C9 C10 MYS sing 305 n n C9 H91 MYS sing 306 n n C9 H92 MYS sing 307 n n C10 C11 MYS sing 308 n n C10 H101 MYS sing 309 n n C10 H102 MYS sing 310 n n C11 C12 MYS sing 311 n n C11 H111 MYS sing 312 n n C11 H112 MYS sing 313 n n C12 C13 MYS sing 314 n n C12 H121 MYS sing 315 n n C12 H122 MYS sing 316 n n C13 C14 MYS sing 317 n n C13 H131 MYS sing 318 n n C13 H132 MYS sing 319 n n C14 C15 MYS sing 320 n n C14 H141 MYS sing 321 n n C14 H142 MYS sing 322 n n C15 H151 MYS sing 323 n n C15 H152 MYS sing 324 n n C15 H153 MYS sing 325 n n # _atom_sites.entry_id 5HYA _atom_sites.fract_transf_matrix[1][1] 0.020206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 2 NA A 1 402 2 NA NA . D 2 NA A 1 403 1 NA NA . E 3 CA A 1 404 1 CA CA . F 4 ACT A 1 405 1 ACT ACT . G 4 ACT A 1 406 1 ACT ACT . H 4 ACT A 1 407 1 ACT ACT . I 4 ACT A 1 408 1 ACT ACT . J 5 OLC A 1 409 1 OLC MON . K 5 OLC A 1 410 1 OLC MON . L 5 OLC A 1 411 1 OLC MON . M 6 MYS A 1 412 1 MYS FAT . N 6 MYS A 1 413 1 MYS FAT . O 6 MYS A 1 414 1 MYS FAT . P 7 1PE A 1 415 1 1PE PEG . Q 6 MYS A 1 416 1 MYS FAT . R 6 MYS A 1 417 1 MYS FAT . S 6 MYS A 1 418 1 MYS FAT . T 6 MYS A 1 419 1 MYS FAT . U 6 MYS A 1 420 1 MYS FAT . V 6 MYS A 1 421 1 MYS FAT . W 5 OLC A 1 422 1 OLC MON . X 5 OLC A 1 423 1 OLC MON . Y 8 HOH A 1 501 96 HOH HOH . Y 8 HOH A 2 502 77 HOH HOH . Y 8 HOH A 3 503 97 HOH HOH . Y 8 HOH A 4 504 12 HOH HOH . Y 8 HOH A 5 505 53 HOH HOH . Y 8 HOH A 6 506 71 HOH HOH . Y 8 HOH A 7 507 6 HOH HOH . Y 8 HOH A 8 508 100 HOH HOH . Y 8 HOH A 9 509 76 HOH HOH . Y 8 HOH A 10 510 26 HOH HOH . Y 8 HOH A 11 511 36 HOH HOH . Y 8 HOH A 12 512 11 HOH HOH . Y 8 HOH A 13 513 18 HOH HOH . Y 8 HOH A 14 514 50 HOH HOH . Y 8 HOH A 15 515 1 HOH HOH . Y 8 HOH A 16 516 83 HOH HOH . Y 8 HOH A 17 517 10 HOH HOH . Y 8 HOH A 18 518 15 HOH HOH . Y 8 HOH A 19 519 79 HOH HOH . Y 8 HOH A 20 520 16 HOH HOH . Y 8 HOH A 21 521 13 HOH HOH . Y 8 HOH A 22 522 75 HOH HOH . Y 8 HOH A 23 523 41 HOH HOH . Y 8 HOH A 24 524 84 HOH HOH . Y 8 HOH A 25 525 32 HOH HOH . Y 8 HOH A 26 526 3 HOH HOH . Y 8 HOH A 27 527 22 HOH HOH . Y 8 HOH A 28 528 51 HOH HOH . Y 8 HOH A 29 529 9 HOH HOH . Y 8 HOH A 30 530 4 HOH HOH . Y 8 HOH A 31 531 23 HOH HOH . Y 8 HOH A 32 532 14 HOH HOH . Y 8 HOH A 33 533 25 HOH HOH . Y 8 HOH A 34 534 46 HOH HOH . Y 8 HOH A 35 535 21 HOH HOH . Y 8 HOH A 36 536 24 HOH HOH . Y 8 HOH A 37 537 2 HOH HOH . Y 8 HOH A 38 538 31 HOH HOH . Y 8 HOH A 39 539 88 HOH HOH . Y 8 HOH A 40 540 57 HOH HOH . Y 8 HOH A 41 541 59 HOH HOH . Y 8 HOH A 42 542 45 HOH HOH . Y 8 HOH A 43 543 82 HOH HOH . Y 8 HOH A 44 544 55 HOH HOH . Y 8 HOH A 45 545 27 HOH HOH . Y 8 HOH A 46 546 7 HOH HOH . Y 8 HOH A 47 547 37 HOH HOH . Y 8 HOH A 48 548 34 HOH HOH . Y 8 HOH A 49 549 42 HOH HOH . Y 8 HOH A 50 550 94 HOH HOH . Y 8 HOH A 51 551 61 HOH HOH . Y 8 HOH A 52 552 8 HOH HOH . Y 8 HOH A 53 553 66 HOH HOH . Y 8 HOH A 54 554 17 HOH HOH . Y 8 HOH A 55 555 43 HOH HOH . Y 8 HOH A 56 556 64 HOH HOH . Y 8 HOH A 57 557 20 HOH HOH . Y 8 HOH A 58 558 70 HOH HOH . Y 8 HOH A 59 559 29 HOH HOH . Y 8 HOH A 60 560 67 HOH HOH . Y 8 HOH A 61 561 38 HOH HOH . Y 8 HOH A 62 562 28 HOH HOH . Y 8 HOH A 63 563 5 HOH HOH . Y 8 HOH A 64 564 54 HOH HOH . Y 8 HOH A 65 565 19 HOH HOH . Y 8 HOH A 66 566 93 HOH HOH . Y 8 HOH A 67 567 98 HOH HOH . Y 8 HOH A 68 568 60 HOH HOH . Y 8 HOH A 69 569 99 HOH HOH . Y 8 HOH A 70 570 89 HOH HOH . Y 8 HOH A 71 571 44 HOH HOH . Y 8 HOH A 72 572 87 HOH HOH . Y 8 HOH A 73 573 49 HOH HOH . Y 8 HOH A 74 574 35 HOH HOH . Y 8 HOH A 75 575 78 HOH HOH . Y 8 HOH A 76 576 63 HOH HOH . Y 8 HOH A 77 577 85 HOH HOH . Y 8 HOH A 78 578 40 HOH HOH . Y 8 HOH A 79 579 47 HOH HOH . Y 8 HOH A 80 580 86 HOH HOH . Y 8 HOH A 81 581 62 HOH HOH . Y 8 HOH A 82 582 56 HOH HOH . Y 8 HOH A 83 583 69 HOH HOH . Y 8 HOH A 84 584 52 HOH HOH . Y 8 HOH A 85 585 33 HOH HOH . Y 8 HOH A 86 586 81 HOH HOH . Y 8 HOH A 87 587 90 HOH HOH . Y 8 HOH A 88 588 65 HOH HOH . Y 8 HOH A 89 589 68 HOH HOH . Y 8 HOH A 90 590 95 HOH HOH . Y 8 HOH A 91 591 73 HOH HOH . Y 8 HOH A 92 592 30 HOH HOH . Y 8 HOH A 93 593 58 HOH HOH . Y 8 HOH A 94 594 74 HOH HOH . Y 8 HOH A 95 595 48 HOH HOH . Y 8 HOH A 96 596 91 HOH HOH . Y 8 HOH A 97 597 39 HOH HOH . Y 8 HOH A 98 598 92 HOH HOH . Y 8 HOH A 99 599 72 HOH HOH . Y 8 HOH A 100 600 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MYS . . . T 6 -12.072 27.704 22.687 1 29.11 ? C2 MYS 419 A 1 HETATM 2 C C3 MYS . . . T 6 -11.531 28.998 23.256 1 28.62 ? C3 MYS 419 A 1 HETATM 3 C C4 MYS . . . T 6 -11.218 28.939 24.738 1 32.21 ? C4 MYS 419 A 1 HETATM 4 C C5 MYS . . . T 6 -12.448 28.903 25.619 1 40.77 ? C5 MYS 419 A 1 HETATM 5 C C6 MYS . . . T 6 -12.089 29.256 27.044 1 35.41 ? C6 MYS 419 A 1 HETATM 6 C C7 MYS . . . T 6 -13.121 28.847 28.074 1 38.92 ? C7 MYS 419 A 1 HETATM 7 C C8 MYS . . . T 6 -12.573 29.051 29.469 1 39.88 ? C8 MYS 419 A 1 HETATM 8 C C9 MYS . . . T 6 -13.618 28.942 30.56 1 45.68 ? C9 MYS 419 A 1 HETATM 9 C C10 MYS . . . T 6 -13.028 29.209 31.929 1 38.63 ? C10 MYS 419 A 1 HETATM 10 C C11 MYS . . . T 6 -11.916 28.237 32.238 1 36.02 ? C11 MYS 419 A 1 HETATM 11 C C12 MYS . . . T 6 -11.248 28.443 33.577 1 39.71 ? C12 MYS 419 A 1 HETATM 12 C C13 MYS . . . T 6 -10.312 27.303 33.922 1 27.78 ? C13 MYS 419 A 1 HETATM 13 C C14 MYS . . . T 6 -11.09 26.059 34.282 1 47.4 ? C14 MYS 419 A 1 HETATM 14 C C15 MYS . . . T 6 -10.225 25.002 34.927 1 51.17 ? C15 MYS 419 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #