data_5HYA # _model_server_result.job_id jUL9ECcuWHBhbRXvIpZh7g _model_server_result.datetime_utc '2024-11-23 03:31:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":423}' # _entry.id 5HYA # _exptl.entry_id 5HYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HYA _cell.length_a 49.49 _cell.length_b 72.879 _cell.length_c 96.206 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N ? 5 L N N ? 5 W N N ? 5 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 47 A ALA 47 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OG1 THR 50 A THR 50 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A O THR 50 A THR 50 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A OG SER 51 A SER 51 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 A OE1 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc6 A OE2 GLU 54 A GLU 54 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc7 A OE2 GLU 54 A GLU 54 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 A OG SER 77 A SER 77 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc9 A O ILE 118 A ILE 118 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 A OD1 ASP 121 A ASP 121 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc11 A O GLY 122 A GLY 122 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 A OD2 ASP 127 A ASP 127 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc13 A O ALA 206 A ALA 206 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 A O THR 209 A THR 209 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc15 A OG1 THR 209 A THR 209 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 A OG SER 210 A SER 210 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc17 A OE2 GLU 213 A GLU 213 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc18 A OE1 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc19 A OE2 GLU 213 A GLU 213 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc20 A OG SER 236 A SER 236 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc21 E CA CA . A CA 404 1_555 J O25 OLC . A OLC 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc22 E CA CA . A CA 404 1_555 Y O HOH . A HOH 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 326 n n C10 C9 OLC doub 327 n n C10 C11 OLC sing 328 n n C9 C8 OLC sing 329 n n C17 C16 OLC sing 330 z n C11 C12 OLC sing 331 n n C8 C7 OLC sing 332 n n C24 C22 OLC sing 333 n n C24 O25 OLC sing 334 n n C16 C15 OLC sing 335 n n C12 C13 OLC sing 336 n n C7 C6 OLC sing 337 n n C15 C14 OLC sing 338 n n C13 C14 OLC sing 339 n n C6 C5 OLC sing 340 n n C5 C4 OLC sing 341 n n C4 C3 OLC sing 342 n n C3 C2 OLC sing 343 n n C2 C1 OLC sing 344 n n C21 C22 OLC sing 345 n n C21 O20 OLC sing 346 n n C1 O19 OLC doub 347 n n C1 O20 OLC sing 348 n n C22 O23 OLC sing 349 n n C18 H18 OLC sing 350 n n C18 H18A OLC sing 351 n n C18 H18B OLC sing 352 n n C10 H10 OLC sing 353 n n C9 H9 OLC sing 354 n n C17 H17 OLC sing 355 n n C17 H17A OLC sing 356 n n C11 H11 OLC sing 357 n n C11 H11A OLC sing 358 n n C8 H8 OLC sing 359 n n C8 H8A OLC sing 360 n n C24 H24 OLC sing 361 n n C24 H24A OLC sing 362 n n C16 H16 OLC sing 363 n n C16 H16A OLC sing 364 n n C12 H12 OLC sing 365 n n C12 H12A OLC sing 366 n n C7 H7 OLC sing 367 n n C7 H7A OLC sing 368 n n C15 H15 OLC sing 369 n n C15 H15A OLC sing 370 n n C13 H13 OLC sing 371 n n C13 H13A OLC sing 372 n n C6 H6 OLC sing 373 n n C6 H6A OLC sing 374 n n C14 H14 OLC sing 375 n n C14 H14A OLC sing 376 n n C5 H5 OLC sing 377 n n C5 H5A OLC sing 378 n n C4 H4 OLC sing 379 n n C4 H4A OLC sing 380 n n C3 H3 OLC sing 381 n n C3 H3A OLC sing 382 n n C2 H2 OLC sing 383 n n C2 H2A OLC sing 384 n n C21 H21 OLC sing 385 n n C21 H21A OLC sing 386 n n C22 H22 OLC sing 387 n n O25 HO25 OLC sing 388 n n O23 HO23 OLC sing 389 n n # _atom_sites.entry_id 5HYA _atom_sites.fract_transf_matrix[1][1] 0.020206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 401 1 NA NA . C 2 NA A 1 402 2 NA NA . D 2 NA A 1 403 1 NA NA . E 3 CA A 1 404 1 CA CA . F 4 ACT A 1 405 1 ACT ACT . G 4 ACT A 1 406 1 ACT ACT . H 4 ACT A 1 407 1 ACT ACT . I 4 ACT A 1 408 1 ACT ACT . J 5 OLC A 1 409 1 OLC MON . K 5 OLC A 1 410 1 OLC MON . L 5 OLC A 1 411 1 OLC MON . M 6 MYS A 1 412 1 MYS FAT . N 6 MYS A 1 413 1 MYS FAT . O 6 MYS A 1 414 1 MYS FAT . P 7 1PE A 1 415 1 1PE PEG . Q 6 MYS A 1 416 1 MYS FAT . R 6 MYS A 1 417 1 MYS FAT . S 6 MYS A 1 418 1 MYS FAT . T 6 MYS A 1 419 1 MYS FAT . U 6 MYS A 1 420 1 MYS FAT . V 6 MYS A 1 421 1 MYS FAT . W 5 OLC A 1 422 1 OLC MON . X 5 OLC A 1 423 1 OLC MON . Y 8 HOH A 1 501 96 HOH HOH . Y 8 HOH A 2 502 77 HOH HOH . Y 8 HOH A 3 503 97 HOH HOH . Y 8 HOH A 4 504 12 HOH HOH . Y 8 HOH A 5 505 53 HOH HOH . Y 8 HOH A 6 506 71 HOH HOH . Y 8 HOH A 7 507 6 HOH HOH . Y 8 HOH A 8 508 100 HOH HOH . Y 8 HOH A 9 509 76 HOH HOH . Y 8 HOH A 10 510 26 HOH HOH . Y 8 HOH A 11 511 36 HOH HOH . Y 8 HOH A 12 512 11 HOH HOH . Y 8 HOH A 13 513 18 HOH HOH . Y 8 HOH A 14 514 50 HOH HOH . Y 8 HOH A 15 515 1 HOH HOH . Y 8 HOH A 16 516 83 HOH HOH . Y 8 HOH A 17 517 10 HOH HOH . Y 8 HOH A 18 518 15 HOH HOH . Y 8 HOH A 19 519 79 HOH HOH . Y 8 HOH A 20 520 16 HOH HOH . Y 8 HOH A 21 521 13 HOH HOH . Y 8 HOH A 22 522 75 HOH HOH . Y 8 HOH A 23 523 41 HOH HOH . Y 8 HOH A 24 524 84 HOH HOH . Y 8 HOH A 25 525 32 HOH HOH . Y 8 HOH A 26 526 3 HOH HOH . Y 8 HOH A 27 527 22 HOH HOH . Y 8 HOH A 28 528 51 HOH HOH . Y 8 HOH A 29 529 9 HOH HOH . Y 8 HOH A 30 530 4 HOH HOH . Y 8 HOH A 31 531 23 HOH HOH . Y 8 HOH A 32 532 14 HOH HOH . Y 8 HOH A 33 533 25 HOH HOH . Y 8 HOH A 34 534 46 HOH HOH . Y 8 HOH A 35 535 21 HOH HOH . Y 8 HOH A 36 536 24 HOH HOH . Y 8 HOH A 37 537 2 HOH HOH . Y 8 HOH A 38 538 31 HOH HOH . Y 8 HOH A 39 539 88 HOH HOH . Y 8 HOH A 40 540 57 HOH HOH . Y 8 HOH A 41 541 59 HOH HOH . Y 8 HOH A 42 542 45 HOH HOH . Y 8 HOH A 43 543 82 HOH HOH . Y 8 HOH A 44 544 55 HOH HOH . Y 8 HOH A 45 545 27 HOH HOH . Y 8 HOH A 46 546 7 HOH HOH . Y 8 HOH A 47 547 37 HOH HOH . Y 8 HOH A 48 548 34 HOH HOH . Y 8 HOH A 49 549 42 HOH HOH . Y 8 HOH A 50 550 94 HOH HOH . Y 8 HOH A 51 551 61 HOH HOH . Y 8 HOH A 52 552 8 HOH HOH . Y 8 HOH A 53 553 66 HOH HOH . Y 8 HOH A 54 554 17 HOH HOH . Y 8 HOH A 55 555 43 HOH HOH . Y 8 HOH A 56 556 64 HOH HOH . Y 8 HOH A 57 557 20 HOH HOH . Y 8 HOH A 58 558 70 HOH HOH . Y 8 HOH A 59 559 29 HOH HOH . Y 8 HOH A 60 560 67 HOH HOH . Y 8 HOH A 61 561 38 HOH HOH . Y 8 HOH A 62 562 28 HOH HOH . Y 8 HOH A 63 563 5 HOH HOH . Y 8 HOH A 64 564 54 HOH HOH . Y 8 HOH A 65 565 19 HOH HOH . Y 8 HOH A 66 566 93 HOH HOH . Y 8 HOH A 67 567 98 HOH HOH . Y 8 HOH A 68 568 60 HOH HOH . Y 8 HOH A 69 569 99 HOH HOH . Y 8 HOH A 70 570 89 HOH HOH . Y 8 HOH A 71 571 44 HOH HOH . Y 8 HOH A 72 572 87 HOH HOH . Y 8 HOH A 73 573 49 HOH HOH . Y 8 HOH A 74 574 35 HOH HOH . Y 8 HOH A 75 575 78 HOH HOH . Y 8 HOH A 76 576 63 HOH HOH . Y 8 HOH A 77 577 85 HOH HOH . Y 8 HOH A 78 578 40 HOH HOH . Y 8 HOH A 79 579 47 HOH HOH . Y 8 HOH A 80 580 86 HOH HOH . Y 8 HOH A 81 581 62 HOH HOH . Y 8 HOH A 82 582 56 HOH HOH . Y 8 HOH A 83 583 69 HOH HOH . Y 8 HOH A 84 584 52 HOH HOH . Y 8 HOH A 85 585 33 HOH HOH . Y 8 HOH A 86 586 81 HOH HOH . Y 8 HOH A 87 587 90 HOH HOH . Y 8 HOH A 88 588 65 HOH HOH . Y 8 HOH A 89 589 68 HOH HOH . Y 8 HOH A 90 590 95 HOH HOH . Y 8 HOH A 91 591 73 HOH HOH . Y 8 HOH A 92 592 30 HOH HOH . Y 8 HOH A 93 593 58 HOH HOH . Y 8 HOH A 94 594 74 HOH HOH . Y 8 HOH A 95 595 48 HOH HOH . Y 8 HOH A 96 596 91 HOH HOH . Y 8 HOH A 97 597 39 HOH HOH . Y 8 HOH A 98 598 92 HOH HOH . Y 8 HOH A 99 599 72 HOH HOH . Y 8 HOH A 100 600 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . X 5 14.174 36.729 16.261 1 51.3 ? C18 OLC 423 A 1 HETATM 2 C C10 OLC . . . X 5 4.893 34.147 19.038 1 38.43 ? C10 OLC 423 A 1 HETATM 3 C C9 OLC . . . X 5 4.125 34.168 20.383 1 39.83 ? C9 OLC 423 A 1 HETATM 4 C C17 OLC . . . X 5 13.313 35.797 17.085 1 50.18 ? C17 OLC 423 A 1 HETATM 5 C C11 OLC . . . X 5 6.385 34.538 19.138 1 37.12 ? C11 OLC 423 A 1 HETATM 6 C C8 OLC . . . X 5 4.987 34.6 21.615 1 37.65 ? C8 OLC 423 A 1 HETATM 7 C C24 OLC . . . X 5 1.001 28.055 26.987 1 29.94 ? C24 OLC 423 A 1 HETATM 8 C C16 OLC . . . X 5 11.903 35.645 16.489 1 53.23 ? C16 OLC 423 A 1 HETATM 9 C C12 OLC . . . X 5 7.067 34.615 17.722 1 30.02 ? C12 OLC 423 A 1 HETATM 10 C C7 OLC . . . X 5 4.143 34.581 22.923 1 38.59 ? C7 OLC 423 A 1 HETATM 11 C C15 OLC . . . X 5 10.928 34.878 17.415 1 52.02 ? C15 OLC 423 A 1 HETATM 12 C C13 OLC . . . X 5 8.513 34.065 17.784 1 41 ? C13 OLC 423 A 1 HETATM 13 C C6 OLC . . . X 5 4.505 35.772 23.884 1 43.63 ? C6 OLC 423 A 1 HETATM 14 C C14 OLC . . . X 5 9.491 34.846 16.861 1 48.41 ? C14 OLC 423 A 1 HETATM 15 C C5 OLC . . . X 5 4.429 35.404 25.386 1 46.5 ? C5 OLC 423 A 1 HETATM 16 C C4 OLC . . . X 5 4.222 33.887 25.615 1 47.04 ? C4 OLC 423 A 1 HETATM 17 C C3 OLC . . . X 5 3.256 33.554 26.797 1 42.86 ? C3 OLC 423 A 1 HETATM 18 C C2 OLC . . . X 5 2.028 32.75 26.309 1 36.6 ? C2 OLC 423 A 1 HETATM 19 C C21 OLC . . . X 5 0.458 29.961 28.443 1 33.92 ? C21 OLC 423 A 1 HETATM 20 C C1 OLC . . . X 5 1.29 32.046 27.45 1 33.46 ? C1 OLC 423 A 1 HETATM 21 C C22 OLC . . . X 5 0.791 28.496 28.434 1 29.95 ? C22 OLC 423 A 1 HETATM 22 O O19 OLC . . . X 5 0.534 32.67 28.14 1 39.9 ? O19 OLC 423 A 1 HETATM 23 O O25 OLC . . . X 5 -0.214 28.207 26.246 1 30.24 ? O25 OLC 423 A 1 HETATM 24 O O23 OLC . . . X 5 1.975 28.254 29.143 1 22.38 ? O23 OLC 423 A 1 HETATM 25 O O20 OLC . . . X 5 1.491 30.647 27.688 1 38.73 ? O20 OLC 423 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #