data_5HYK # _model_server_result.job_id o3kneokrI1x36yvhVAQv3w _model_server_result.datetime_utc '2024-11-22 21:29:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5HYK # _exptl.entry_id 5HYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.355 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-methyl-2-[4-(naphthalen-1-yl)phenoxy]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HYK _cell.length_a 63.65 _cell.length_b 63.65 _cell.length_c 126 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H18 O3' _chem_comp.formula_weight 306.355 _chem_comp.id 65W _chem_comp.mon_nstd_flag . _chem_comp.name '2-methyl-2-[4-(naphthalen-1-yl)phenoxy]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAN CAG 65W doub 1 n y CAN CAU 65W sing 2 n y CAG CAH 65W sing 3 n y CAM CAU 65W doub 4 n y CAM CAE 65W sing 5 n y CAU CAV 65W sing 6 n y CAH CAT 65W doub 7 n y CAE CAF 65W doub 8 n y CAV CAT 65W sing 9 n y CAV CAO 65W doub 10 n y CAT CAS 65W sing 11 n n CAF CAO 65W sing 12 n y CAS CAL 65W doub 13 n y CAS CAK 65W sing 14 n y CAL CAJ 65W sing 15 n y CAK CAI 65W doub 16 n y CAJ CAR 65W doub 17 n y CAI CAR 65W sing 18 n y CAR OAP 65W sing 19 n n CAB CAW 65W sing 20 n n OAP CAW 65W sing 21 n n OAC CAQ 65W doub 22 n n CAQ CAW 65W sing 23 n n CAQ OAD 65W sing 24 n n CAW CAA 65W sing 25 n n OAD H1 65W sing 26 n n CAA H2 65W sing 27 n n CAA H3 65W sing 28 n n CAA H4 65W sing 29 n n CAB H5 65W sing 30 n n CAB H6 65W sing 31 n n CAB H7 65W sing 32 n n CAJ H8 65W sing 33 n n CAL H9 65W sing 34 n n CAI H10 65W sing 35 n n CAK H11 65W sing 36 n n CAO H12 65W sing 37 n n CAF H13 65W sing 38 n n CAE H14 65W sing 39 n n CAM H15 65W sing 40 n n CAN H16 65W sing 41 n n CAG H17 65W sing 42 n n CAH H18 65W sing 43 n n # _atom_sites.entry_id 5HYK _atom_sites.fract_transf_matrix[1][1] 0.015711 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 65W A 1 501 1 65W UNK . C 3 HOH A 1 601 34 HOH HOH . C 3 HOH A 2 602 202 HOH HOH . C 3 HOH A 3 603 57 HOH HOH . C 3 HOH A 4 604 107 HOH HOH . C 3 HOH A 5 605 213 HOH HOH . C 3 HOH A 6 606 100 HOH HOH . C 3 HOH A 7 607 124 HOH HOH . C 3 HOH A 8 608 145 HOH HOH . C 3 HOH A 9 609 128 HOH HOH . C 3 HOH A 10 610 152 HOH HOH . C 3 HOH A 11 611 91 HOH HOH . C 3 HOH A 12 612 28 HOH HOH . C 3 HOH A 13 613 121 HOH HOH . C 3 HOH A 14 614 179 HOH HOH . C 3 HOH A 15 615 29 HOH HOH . C 3 HOH A 16 616 62 HOH HOH . C 3 HOH A 17 617 79 HOH HOH . C 3 HOH A 18 618 115 HOH HOH . C 3 HOH A 19 619 180 HOH HOH . C 3 HOH A 20 620 93 HOH HOH . C 3 HOH A 21 621 119 HOH HOH . C 3 HOH A 22 622 31 HOH HOH . C 3 HOH A 23 623 37 HOH HOH . C 3 HOH A 24 624 177 HOH HOH . C 3 HOH A 25 625 78 HOH HOH . C 3 HOH A 26 626 44 HOH HOH . C 3 HOH A 27 627 191 HOH HOH . C 3 HOH A 28 628 26 HOH HOH . C 3 HOH A 29 629 60 HOH HOH . C 3 HOH A 30 630 163 HOH HOH . C 3 HOH A 31 631 105 HOH HOH . C 3 HOH A 32 632 61 HOH HOH . C 3 HOH A 33 633 136 HOH HOH . C 3 HOH A 34 634 82 HOH HOH . C 3 HOH A 35 635 96 HOH HOH . C 3 HOH A 36 636 84 HOH HOH . C 3 HOH A 37 637 76 HOH HOH . C 3 HOH A 38 638 193 HOH HOH . C 3 HOH A 39 639 49 HOH HOH . C 3 HOH A 40 640 20 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 46 HOH HOH . C 3 HOH A 43 643 164 HOH HOH . C 3 HOH A 44 644 17 HOH HOH . C 3 HOH A 45 645 157 HOH HOH . C 3 HOH A 46 646 55 HOH HOH . C 3 HOH A 47 647 22 HOH HOH . C 3 HOH A 48 648 215 HOH HOH . C 3 HOH A 49 649 69 HOH HOH . C 3 HOH A 50 650 182 HOH HOH . C 3 HOH A 51 651 21 HOH HOH . C 3 HOH A 52 652 35 HOH HOH . C 3 HOH A 53 653 106 HOH HOH . C 3 HOH A 54 654 52 HOH HOH . C 3 HOH A 55 655 92 HOH HOH . C 3 HOH A 56 656 12 HOH HOH . C 3 HOH A 57 657 208 HOH HOH . C 3 HOH A 58 658 64 HOH HOH . C 3 HOH A 59 659 87 HOH HOH . C 3 HOH A 60 660 3 HOH HOH . C 3 HOH A 61 661 65 HOH HOH . C 3 HOH A 62 662 214 HOH HOH . C 3 HOH A 63 663 30 HOH HOH . C 3 HOH A 64 664 114 HOH HOH . C 3 HOH A 65 665 56 HOH HOH . C 3 HOH A 66 666 1 HOH HOH . C 3 HOH A 67 667 216 HOH HOH . C 3 HOH A 68 668 159 HOH HOH . C 3 HOH A 69 669 10 HOH HOH . C 3 HOH A 70 670 161 HOH HOH . C 3 HOH A 71 671 14 HOH HOH . C 3 HOH A 72 672 187 HOH HOH . C 3 HOH A 73 673 103 HOH HOH . C 3 HOH A 74 674 169 HOH HOH . C 3 HOH A 75 675 86 HOH HOH . C 3 HOH A 76 676 32 HOH HOH . C 3 HOH A 77 677 104 HOH HOH . C 3 HOH A 78 678 15 HOH HOH . C 3 HOH A 79 679 51 HOH HOH . C 3 HOH A 80 680 98 HOH HOH . C 3 HOH A 81 681 45 HOH HOH . C 3 HOH A 82 682 33 HOH HOH . C 3 HOH A 83 683 99 HOH HOH . C 3 HOH A 84 684 118 HOH HOH . C 3 HOH A 85 685 122 HOH HOH . C 3 HOH A 86 686 24 HOH HOH . C 3 HOH A 87 687 147 HOH HOH . C 3 HOH A 88 688 188 HOH HOH . C 3 HOH A 89 689 8 HOH HOH . C 3 HOH A 90 690 67 HOH HOH . C 3 HOH A 91 691 53 HOH HOH . C 3 HOH A 92 692 102 HOH HOH . C 3 HOH A 93 693 112 HOH HOH . C 3 HOH A 94 694 50 HOH HOH . C 3 HOH A 95 695 58 HOH HOH . C 3 HOH A 96 696 81 HOH HOH . C 3 HOH A 97 697 63 HOH HOH . C 3 HOH A 98 698 142 HOH HOH . C 3 HOH A 99 699 88 HOH HOH . C 3 HOH A 100 700 210 HOH HOH . C 3 HOH A 101 701 18 HOH HOH . C 3 HOH A 102 702 36 HOH HOH . C 3 HOH A 103 703 59 HOH HOH . C 3 HOH A 104 704 130 HOH HOH . C 3 HOH A 105 705 74 HOH HOH . C 3 HOH A 106 706 4 HOH HOH . C 3 HOH A 107 707 6 HOH HOH . C 3 HOH A 108 708 194 HOH HOH . C 3 HOH A 109 709 94 HOH HOH . C 3 HOH A 110 710 181 HOH HOH . C 3 HOH A 111 711 7 HOH HOH . C 3 HOH A 112 712 90 HOH HOH . C 3 HOH A 113 713 195 HOH HOH . C 3 HOH A 114 714 66 HOH HOH . C 3 HOH A 115 715 116 HOH HOH . C 3 HOH A 116 716 135 HOH HOH . C 3 HOH A 117 717 42 HOH HOH . C 3 HOH A 118 718 89 HOH HOH . C 3 HOH A 119 719 9 HOH HOH . C 3 HOH A 120 720 171 HOH HOH . C 3 HOH A 121 721 151 HOH HOH . C 3 HOH A 122 722 19 HOH HOH . C 3 HOH A 123 723 199 HOH HOH . C 3 HOH A 124 724 75 HOH HOH . C 3 HOH A 125 725 149 HOH HOH . C 3 HOH A 126 726 5 HOH HOH . C 3 HOH A 127 727 13 HOH HOH . C 3 HOH A 128 728 127 HOH HOH . C 3 HOH A 129 729 40 HOH HOH . C 3 HOH A 130 730 207 HOH HOH . C 3 HOH A 131 731 71 HOH HOH . C 3 HOH A 132 732 16 HOH HOH . C 3 HOH A 133 733 25 HOH HOH . C 3 HOH A 134 734 38 HOH HOH . C 3 HOH A 135 735 72 HOH HOH . C 3 HOH A 136 736 176 HOH HOH . C 3 HOH A 137 737 185 HOH HOH . C 3 HOH A 138 738 111 HOH HOH . C 3 HOH A 139 739 162 HOH HOH . C 3 HOH A 140 740 146 HOH HOH . C 3 HOH A 141 741 132 HOH HOH . C 3 HOH A 142 742 123 HOH HOH . C 3 HOH A 143 743 175 HOH HOH . C 3 HOH A 144 744 173 HOH HOH . C 3 HOH A 145 745 43 HOH HOH . C 3 HOH A 146 746 150 HOH HOH . C 3 HOH A 147 747 205 HOH HOH . C 3 HOH A 148 748 129 HOH HOH . C 3 HOH A 149 749 174 HOH HOH . C 3 HOH A 150 750 73 HOH HOH . C 3 HOH A 151 751 101 HOH HOH . C 3 HOH A 152 752 217 HOH HOH . C 3 HOH A 153 753 137 HOH HOH . C 3 HOH A 154 754 27 HOH HOH . C 3 HOH A 155 755 11 HOH HOH . C 3 HOH A 156 756 85 HOH HOH . C 3 HOH A 157 757 197 HOH HOH . C 3 HOH A 158 758 139 HOH HOH . C 3 HOH A 159 759 198 HOH HOH . C 3 HOH A 160 760 186 HOH HOH . C 3 HOH A 161 761 110 HOH HOH . C 3 HOH A 162 762 39 HOH HOH . C 3 HOH A 163 763 160 HOH HOH . C 3 HOH A 164 764 209 HOH HOH . C 3 HOH A 165 765 83 HOH HOH . C 3 HOH A 166 766 167 HOH HOH . C 3 HOH A 167 767 47 HOH HOH . C 3 HOH A 168 768 190 HOH HOH . C 3 HOH A 169 769 80 HOH HOH . C 3 HOH A 170 770 2 HOH HOH . C 3 HOH A 171 771 77 HOH HOH . C 3 HOH A 172 772 108 HOH HOH . C 3 HOH A 173 773 218 HOH HOH . C 3 HOH A 174 774 143 HOH HOH . C 3 HOH A 175 775 48 HOH HOH . C 3 HOH A 176 776 141 HOH HOH . C 3 HOH A 177 777 131 HOH HOH . C 3 HOH A 178 778 23 HOH HOH . C 3 HOH A 179 779 170 HOH HOH . C 3 HOH A 180 780 95 HOH HOH . C 3 HOH A 181 781 158 HOH HOH . C 3 HOH A 182 782 120 HOH HOH . C 3 HOH A 183 783 109 HOH HOH . C 3 HOH A 184 784 117 HOH HOH . C 3 HOH A 185 785 144 HOH HOH . C 3 HOH A 186 786 172 HOH HOH . C 3 HOH A 187 787 155 HOH HOH . C 3 HOH A 188 788 125 HOH HOH . C 3 HOH A 189 789 153 HOH HOH . C 3 HOH A 190 790 219 HOH HOH . C 3 HOH A 191 791 183 HOH HOH . C 3 HOH A 192 792 166 HOH HOH . C 3 HOH A 193 793 113 HOH HOH . C 3 HOH A 194 794 189 HOH HOH . C 3 HOH A 195 795 192 HOH HOH . C 3 HOH A 196 796 70 HOH HOH . C 3 HOH A 197 797 148 HOH HOH . C 3 HOH A 198 798 54 HOH HOH . C 3 HOH A 199 799 211 HOH HOH . C 3 HOH A 200 800 204 HOH HOH . C 3 HOH A 201 801 206 HOH HOH . C 3 HOH A 202 802 134 HOH HOH . C 3 HOH A 203 803 154 HOH HOH . C 3 HOH A 204 804 200 HOH HOH . C 3 HOH A 205 805 203 HOH HOH . C 3 HOH A 206 806 221 HOH HOH . C 3 HOH A 207 807 196 HOH HOH . C 3 HOH A 208 808 138 HOH HOH . C 3 HOH A 209 809 140 HOH HOH . C 3 HOH A 210 810 165 HOH HOH . C 3 HOH A 211 811 178 HOH HOH . C 3 HOH A 212 812 68 HOH HOH . C 3 HOH A 213 813 156 HOH HOH . C 3 HOH A 214 814 133 HOH HOH . C 3 HOH A 215 815 212 HOH HOH . C 3 HOH A 216 816 184 HOH HOH . C 3 HOH A 217 817 97 HOH HOH . C 3 HOH A 218 818 201 HOH HOH . C 3 HOH A 219 819 126 HOH HOH . C 3 HOH A 220 820 220 HOH HOH . C 3 HOH A 221 821 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 65W . . . B 2 8.454 29.891 22.514 1 26.39 ? OAC 65W 501 A 1 HETATM 2 C CAQ 65W . . . B 2 8.649 31.111 22.722 1 24.04 ? CAQ 65W 501 A 1 HETATM 3 O OAD 65W . . . B 2 7.685 31.891 22.918 1 25.62 ? OAD 65W 501 A 1 HETATM 4 C CAW 65W . . . B 2 10.057 31.661 22.744 1 25.35 ? CAW 65W 501 A 1 HETATM 5 C CAA 65W . . . B 2 10.552 31.539 24.173 1 25.28 ? CAA 65W 501 A 1 HETATM 6 C CAB 65W . . . B 2 10.976 30.867 21.842 1 28.63 ? CAB 65W 501 A 1 HETATM 7 O OAP 65W . . . B 2 10.005 33.032 22.407 1 27.2 ? OAP 65W 501 A 1 HETATM 8 C CAR 65W . . . B 2 9.76 33.43 21.075 1 30.67 ? CAR 65W 501 A 1 HETATM 9 C CAJ 65W . . . B 2 9.087 32.619 20.173 1 28.51 ? CAJ 65W 501 A 1 HETATM 10 C CAL 65W . . . B 2 8.873 33.047 18.877 1 31.17 ? CAL 65W 501 A 1 HETATM 11 C CAI 65W . . . B 2 10.215 34.677 20.668 1 31.83 ? CAI 65W 501 A 1 HETATM 12 C CAK 65W . . . B 2 10.006 35.108 19.362 1 33.1 ? CAK 65W 501 A 1 HETATM 13 C CAS 65W . . . B 2 9.329 34.29 18.475 1 31.93 ? CAS 65W 501 A 1 HETATM 14 C CAT 65W . . . B 2 9.087 34.705 17.038 1 33.19 ? CAT 65W 501 A 1 HETATM 15 C CAV 65W . . . B 2 8.221 35.757 16.717 1 35.77 ? CAV 65W 501 A 1 HETATM 16 C CAO 65W . . . B 2 7.561 36.465 17.733 1 36.94 ? CAO 65W 501 A 1 HETATM 17 C CAF 65W . . . B 2 6.71 37.506 17.4 1 42.17 ? CAF 65W 501 A 1 HETATM 18 C CAE 65W . . . B 2 6.521 37.842 16.062 1 44.21 ? CAE 65W 501 A 1 HETATM 19 C CAM 65W . . . B 2 7.171 37.146 15.055 1 41.11 ? CAM 65W 501 A 1 HETATM 20 C CAU 65W . . . B 2 8.032 36.09 15.394 1 36.36 ? CAU 65W 501 A 1 HETATM 21 C CAN 65W . . . B 2 8.697 35.374 14.384 1 39.67 ? CAN 65W 501 A 1 HETATM 22 C CAG 65W . . . B 2 9.552 34.328 14.701 1 37.38 ? CAG 65W 501 A 1 HETATM 23 C CAH 65W . . . B 2 9.744 34.002 16.038 1 35.06 ? CAH 65W 501 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #