data_5HYM
#
_model_server_result.job_id            bArDK6aKCeWmfncJ901fAg 
_model_server_result.datetime_utc      '2024-11-18 09:52:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hym 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    5HYM 
#
_exptl.entry_id    5HYM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HYM 
_cell.length_a            106.98 
_cell.length_b            106.98 
_cell.length_c            143.39 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HYM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5HYM 
_atom_sites.fract_transf_matrix[1][1]    0.009348 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009348 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 501 500 FAD FAD . 
C 3 T7X A 1 502 501 T7X T7X . 
D 4 CL A 1 503 1 CL CL . 
E 5 HOH A 1 601 9 HOH HOH . 
E 5 HOH A 2 602 14 HOH HOH . 
E 5 HOH A 3 603 6 HOH HOH . 
E 5 HOH A 4 604 15 HOH HOH . 
E 5 HOH A 5 605 4 HOH HOH . 
E 5 HOH A 6 606 7 HOH HOH . 
E 5 HOH A 7 607 3 HOH HOH . 
E 5 HOH A 8 608 12 HOH HOH . 
E 5 HOH A 9 609 11 HOH HOH . 
E 5 HOH A 10 610 13 HOH HOH . 
E 5 HOH A 11 611 10 HOH HOH . 
E 5 HOH A 12 612 5 HOH HOH . 
E 5 HOH A 13 613 2 HOH HOH . 
E 5 HOH A 14 614 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -0.541 33.643 -23.936 1 24.78 ? PA FAD 501 A 1 
HETATM 2 O O1A FAD . . . B 2 0.665 33.442 -23.116 1 26.4 ? O1A FAD 501 A 1 
HETATM 3 O O2A FAD . . . B 2 -1.772 34.298 -23.435 1 27.42 ? O2A FAD 501 A 1 
HETATM 4 O O5B FAD . . . B 2 -0.078 34.499 -25.182 1 27.72 ? O5B FAD 501 A 1 
HETATM 5 C C5B FAD . . . B 2 -0.944 35.015 -26.186 1 28.18 ? C5B FAD 501 A 1 
HETATM 6 C C4B FAD . . . B 2 -0.173 36.186 -26.814 1 30.25 ? C4B FAD 501 A 1 
HETATM 7 O O4B FAD . . . B 2 -0.829 36.722 -27.963 1 28.72 ? O4B FAD 501 A 1 
HETATM 8 C C3B FAD . . . B 2 0.047 37.343 -25.814 1 30.41 ? C3B FAD 501 A 1 
HETATM 9 O O3B FAD . . . B 2 1.455 37.72 -25.806 1 29.73 ? O3B FAD 501 A 1 
HETATM 10 C C2B FAD . . . B 2 -0.858 38.467 -26.302 1 31.16 ? C2B FAD 501 A 1 
HETATM 11 O O2B FAD . . . B 2 -0.278 39.751 -26.089 1 33.54 ? O2B FAD 501 A 1 
HETATM 12 C C1B FAD . . . B 2 -0.918 38.169 -27.796 1 30.84 ? C1B FAD 501 A 1 
HETATM 13 N N9A FAD . . . B 2 -2.124 38.534 -28.539 1 30.85 ? N9A FAD 501 A 1 
HETATM 14 C C8A FAD . . . B 2 -3.398 38.493 -28.14 1 30.95 ? C8A FAD 501 A 1 
HETATM 15 N N7A FAD . . . B 2 -4.201 38.804 -29.181 1 34.19 ? N7A FAD 501 A 1 
HETATM 16 C C5A FAD . . . B 2 -3.427 39.029 -30.261 1 32.96 ? C5A FAD 501 A 1 
HETATM 17 C C6A FAD . . . B 2 -3.652 39.39 -31.667 1 32.71 ? C6A FAD 501 A 1 
HETATM 18 N N6A FAD . . . B 2 -4.921 39.593 -32.104 1 31.73 ? N6A FAD 501 A 1 
HETATM 19 N N1A FAD . . . B 2 -2.569 39.509 -32.461 1 30.53 ? N1A FAD 501 A 1 
HETATM 20 C C2A FAD . . . B 2 -1.316 39.32 -32.002 1 33.11 ? C2A FAD 501 A 1 
HETATM 21 N N3A FAD . . . B 2 -1.049 38.961 -30.733 1 31.32 ? N3A FAD 501 A 1 
HETATM 22 C C4A FAD . . . B 2 -2.052 38.816 -29.84 1 32.39 ? C4A FAD 501 A 1 
HETATM 23 N N1 FAD . . . B 2 1.858 26.616 -17.322 1 17.14 ? N1 FAD 501 A 1 
HETATM 24 C C2 FAD . . . B 2 2.879 25.8 -17.076 1 18.21 ? C2 FAD 501 A 1 
HETATM 25 O O2 FAD . . . B 2 3.29 24.996 -17.926 1 18.68 ? O2 FAD 501 A 1 
HETATM 26 N N3 FAD . . . B 2 3.471 25.748 -15.877 1 21.88 ? N3 FAD 501 A 1 
HETATM 27 C C4 FAD . . . B 2 3.107 26.527 -14.853 1 20.77 ? C4 FAD 501 A 1 
HETATM 28 O O4 FAD . . . B 2 3.7 26.518 -13.776 1 20.68 ? O4 FAD 501 A 1 
HETATM 29 C C4X FAD . . . B 2 2.049 27.486 -15.053 1 21.55 ? C4X FAD 501 A 1 
HETATM 30 N N5 FAD . . . B 2 1.668 28.253 -14.022 1 23.12 ? N5 FAD 501 A 1 
HETATM 31 C C5X FAD . . . B 2 0.658 29.111 -14.223 1 25.64 ? C5X FAD 501 A 1 
HETATM 32 C C6 FAD . . . B 2 0.275 29.935 -13.156 1 29.03 ? C6 FAD 501 A 1 
HETATM 33 C C7 FAD . . . B 2 -0.761 30.855 -13.336 1 28.09 ? C7 FAD 501 A 1 
HETATM 34 C C7M FAD . . . B 2 -1.172 31.715 -12.17 1 30.03 ? C7M FAD 501 A 1 
HETATM 35 C C8 FAD . . . B 2 -1.465 30.946 -14.658 1 27.35 ? C8 FAD 501 A 1 
HETATM 36 C C8M FAD . . . B 2 -2.639 31.888 -14.916 1 27.46 ? C8M FAD 501 A 1 
HETATM 37 C C9 FAD . . . B 2 -1.093 30.121 -15.694 1 25.05 ? C9 FAD 501 A 1 
HETATM 38 C C9A FAD . . . B 2 -0.053 29.21 -15.542 1 23.51 ? C9A FAD 501 A 1 
HETATM 39 N N10 FAD . . . B 2 0.318 28.368 -16.61 1 21.79 ? N10 FAD 501 A 1 
HETATM 40 C C10 FAD . . . B 2 1.407 27.479 -16.393 1 20.22 ? C10 FAD 501 A 1 
HETATM 41 C C1' FAD . . . B 2 -0.374 28.393 -17.909 1 19.94 ? C1' FAD 501 A 1 
HETATM 42 C C2' FAD . . . B 2 0.417 29.156 -18.927 1 19.98 ? C2' FAD 501 A 1 
HETATM 43 O O2' FAD . . . B 2 0.75 30.451 -18.433 1 19.57 ? O2' FAD 501 A 1 
HETATM 44 C C3' FAD . . . B 2 -0.392 29.313 -20.195 1 20.92 ? C3' FAD 501 A 1 
HETATM 45 O O3' FAD . . . B 2 -1.028 28.091 -20.546 1 21.36 ? O3' FAD 501 A 1 
HETATM 46 C C4' FAD . . . B 2 0.483 29.659 -21.378 1 21.42 ? C4' FAD 501 A 1 
HETATM 47 O O4' FAD . . . B 2 1.214 30.804 -21.105 1 20.86 ? O4' FAD 501 A 1 
HETATM 48 C C5' FAD . . . B 2 -0.294 30.007 -22.629 1 22.87 ? C5' FAD 501 A 1 
HETATM 49 O O5' FAD . . . B 2 0.622 30.464 -23.589 1 22.14 ? O5' FAD 501 A 1 
HETATM 50 P P FAD . . . B 2 0.026 30.964 -25.002 1 24.24 ? P FAD 501 A 1 
HETATM 51 O O1P FAD . . . B 2 1.293 31.362 -25.783 1 23.04 ? O1P FAD 501 A 1 
HETATM 52 O O2P FAD . . . B 2 -0.792 29.867 -25.623 1 21.71 ? O2P FAD 501 A 1 
HETATM 53 O O3P FAD . . . B 2 -0.96 32.217 -24.626 1 24.1 ? O3P FAD 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           53 
#