data_5HYO # _model_server_result.job_id eNwVG7CYuo7JJhtkED-ycQ _model_server_result.datetime_utc '2024-11-05 01:29:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":403}' # _entry.id 5HYO # _exptl.entry_id 5HYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HYO _cell.length_a 58.586 _cell.length_b 76.292 _cell.length_c 119.169 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 L N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 257 n n C1 H11 MPD sing 258 n n C1 H12 MPD sing 259 n n C1 H13 MPD sing 260 n n C2 O2 MPD sing 261 n n C2 CM MPD sing 262 n n C2 C3 MPD sing 263 n n O2 HO2 MPD sing 264 n n CM HM1 MPD sing 265 n n CM HM2 MPD sing 266 n n CM HM3 MPD sing 267 n n C3 C4 MPD sing 268 n n C3 H31 MPD sing 269 n n C3 H32 MPD sing 270 n n C4 O4 MPD sing 271 n n C4 C5 MPD sing 272 n n C4 H4 MPD sing 273 n n O4 HO4 MPD sing 274 n n C5 H51 MPD sing 275 n n C5 H52 MPD sing 276 n n C5 H53 MPD sing 277 n n # _atom_sites.entry_id 5HYO _atom_sites.fract_transf_matrix[1][1] 0.017069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IPA A 1 401 2 IPA IPA . D 2 IPA A 1 402 7 IPA IPA . E 2 IPA A 1 403 8 IPA IPA . F 2 IPA A 1 404 9 IPA IPA . G 2 IPA A 1 405 10 IPA IPA . H 3 MPD A 1 406 2 MPD MPD . I 4 DMS A 1 407 1 DMS DMS . J 2 IPA B 1 401 3 IPA IPA . K 2 IPA B 1 402 5 IPA IPA . L 3 MPD B 1 403 1 MPD MPD . M 5 HOH A 1 501 33 HOH HOH . M 5 HOH A 2 502 18 HOH HOH . M 5 HOH A 3 503 69 HOH HOH . M 5 HOH A 4 504 176 HOH HOH . M 5 HOH A 5 505 29 HOH HOH . M 5 HOH A 6 506 11 HOH HOH . M 5 HOH A 7 507 165 HOH HOH . M 5 HOH A 8 508 132 HOH HOH . M 5 HOH A 9 509 127 HOH HOH . M 5 HOH A 10 510 155 HOH HOH . M 5 HOH A 11 511 149 HOH HOH . M 5 HOH A 12 512 109 HOH HOH . M 5 HOH A 13 513 23 HOH HOH . M 5 HOH A 14 514 13 HOH HOH . M 5 HOH A 15 515 97 HOH HOH . M 5 HOH A 16 516 164 HOH HOH . M 5 HOH A 17 517 3 HOH HOH . M 5 HOH A 18 518 35 HOH HOH . M 5 HOH A 19 519 46 HOH HOH . M 5 HOH A 20 520 16 HOH HOH . M 5 HOH A 21 521 163 HOH HOH . M 5 HOH A 22 522 96 HOH HOH . M 5 HOH A 23 523 67 HOH HOH . M 5 HOH A 24 524 71 HOH HOH . M 5 HOH A 25 525 25 HOH HOH . M 5 HOH A 26 526 20 HOH HOH . M 5 HOH A 27 527 22 HOH HOH . M 5 HOH A 28 528 140 HOH HOH . M 5 HOH A 29 529 89 HOH HOH . M 5 HOH A 30 530 172 HOH HOH . M 5 HOH A 31 531 41 HOH HOH . M 5 HOH A 32 532 156 HOH HOH . M 5 HOH A 33 533 91 HOH HOH . M 5 HOH A 34 534 26 HOH HOH . M 5 HOH A 35 535 123 HOH HOH . M 5 HOH A 36 536 70 HOH HOH . M 5 HOH A 37 537 81 HOH HOH . M 5 HOH A 38 538 21 HOH HOH . M 5 HOH A 39 539 118 HOH HOH . M 5 HOH A 40 540 92 HOH HOH . M 5 HOH A 41 541 133 HOH HOH . M 5 HOH A 42 542 135 HOH HOH . M 5 HOH A 43 543 136 HOH HOH . M 5 HOH A 44 544 78 HOH HOH . M 5 HOH A 45 545 162 HOH HOH . M 5 HOH A 46 546 110 HOH HOH . M 5 HOH A 47 547 39 HOH HOH . M 5 HOH A 48 548 167 HOH HOH . M 5 HOH A 49 549 175 HOH HOH . M 5 HOH A 50 550 38 HOH HOH . M 5 HOH A 51 551 166 HOH HOH . M 5 HOH A 52 552 107 HOH HOH . M 5 HOH A 53 553 142 HOH HOH . M 5 HOH A 54 554 174 HOH HOH . M 5 HOH A 55 555 65 HOH HOH . M 5 HOH A 56 556 95 HOH HOH . M 5 HOH A 57 557 24 HOH HOH . M 5 HOH A 58 558 105 HOH HOH . M 5 HOH A 59 559 173 HOH HOH . M 5 HOH A 60 560 53 HOH HOH . M 5 HOH A 61 561 99 HOH HOH . M 5 HOH A 62 562 32 HOH HOH . M 5 HOH A 63 563 134 HOH HOH . M 5 HOH A 64 564 100 HOH HOH . M 5 HOH A 65 565 104 HOH HOH . M 5 HOH A 66 566 102 HOH HOH . M 5 HOH A 67 567 103 HOH HOH . M 5 HOH A 68 568 108 HOH HOH . M 5 HOH A 69 569 27 HOH HOH . M 5 HOH A 70 570 131 HOH HOH . M 5 HOH A 71 571 141 HOH HOH . M 5 HOH A 72 572 130 HOH HOH . M 5 HOH A 73 573 55 HOH HOH . M 5 HOH A 74 574 143 HOH HOH . M 5 HOH A 75 575 98 HOH HOH . M 5 HOH A 76 576 146 HOH HOH . M 5 HOH A 77 577 47 HOH HOH . M 5 HOH A 78 578 153 HOH HOH . M 5 HOH A 79 579 161 HOH HOH . M 5 HOH A 80 580 106 HOH HOH . N 5 HOH B 1 501 112 HOH HOH . N 5 HOH B 2 502 159 HOH HOH . N 5 HOH B 3 503 1 HOH HOH . N 5 HOH B 4 504 111 HOH HOH . N 5 HOH B 5 505 93 HOH HOH . N 5 HOH B 6 506 14 HOH HOH . N 5 HOH B 7 507 49 HOH HOH . N 5 HOH B 8 508 19 HOH HOH . N 5 HOH B 9 509 31 HOH HOH . N 5 HOH B 10 510 182 HOH HOH . N 5 HOH B 11 511 12 HOH HOH . N 5 HOH B 12 512 73 HOH HOH . N 5 HOH B 13 513 157 HOH HOH . N 5 HOH B 14 514 5 HOH HOH . N 5 HOH B 15 515 7 HOH HOH . N 5 HOH B 16 516 61 HOH HOH . N 5 HOH B 17 517 170 HOH HOH . N 5 HOH B 18 518 85 HOH HOH . N 5 HOH B 19 519 128 HOH HOH . N 5 HOH B 20 520 6 HOH HOH . N 5 HOH B 21 521 2 HOH HOH . N 5 HOH B 22 522 74 HOH HOH . N 5 HOH B 23 523 4 HOH HOH . N 5 HOH B 24 524 154 HOH HOH . N 5 HOH B 25 525 121 HOH HOH . N 5 HOH B 26 526 56 HOH HOH . N 5 HOH B 27 527 158 HOH HOH . N 5 HOH B 28 528 171 HOH HOH . N 5 HOH B 29 529 48 HOH HOH . N 5 HOH B 30 530 76 HOH HOH . N 5 HOH B 31 531 34 HOH HOH . N 5 HOH B 32 532 57 HOH HOH . N 5 HOH B 33 533 75 HOH HOH . N 5 HOH B 34 534 58 HOH HOH . N 5 HOH B 35 535 17 HOH HOH . N 5 HOH B 36 536 84 HOH HOH . N 5 HOH B 37 537 181 HOH HOH . N 5 HOH B 38 538 8 HOH HOH . N 5 HOH B 39 539 120 HOH HOH . N 5 HOH B 40 540 52 HOH HOH . N 5 HOH B 41 541 145 HOH HOH . N 5 HOH B 42 542 9 HOH HOH . N 5 HOH B 43 543 152 HOH HOH . N 5 HOH B 44 544 60 HOH HOH . N 5 HOH B 45 545 80 HOH HOH . N 5 HOH B 46 546 160 HOH HOH . N 5 HOH B 47 547 122 HOH HOH . N 5 HOH B 48 548 178 HOH HOH . N 5 HOH B 49 549 87 HOH HOH . N 5 HOH B 50 550 79 HOH HOH . N 5 HOH B 51 551 179 HOH HOH . N 5 HOH B 52 552 36 HOH HOH . N 5 HOH B 53 553 15 HOH HOH . N 5 HOH B 54 554 64 HOH HOH . N 5 HOH B 55 555 129 HOH HOH . N 5 HOH B 56 556 86 HOH HOH . N 5 HOH B 57 557 28 HOH HOH . N 5 HOH B 58 558 54 HOH HOH . N 5 HOH B 59 559 68 HOH HOH . N 5 HOH B 60 560 124 HOH HOH . N 5 HOH B 61 561 169 HOH HOH . N 5 HOH B 62 562 30 HOH HOH . N 5 HOH B 63 563 126 HOH HOH . N 5 HOH B 64 564 139 HOH HOH . N 5 HOH B 65 565 42 HOH HOH . N 5 HOH B 66 566 177 HOH HOH . N 5 HOH B 67 567 115 HOH HOH . N 5 HOH B 68 568 88 HOH HOH . N 5 HOH B 69 569 168 HOH HOH . N 5 HOH B 70 570 40 HOH HOH . N 5 HOH B 71 571 113 HOH HOH . N 5 HOH B 72 572 144 HOH HOH . N 5 HOH B 73 573 72 HOH HOH . N 5 HOH B 74 574 59 HOH HOH . N 5 HOH B 75 575 116 HOH HOH . N 5 HOH B 76 576 63 HOH HOH . N 5 HOH B 77 577 147 HOH HOH . N 5 HOH B 78 578 148 HOH HOH . N 5 HOH B 79 579 50 HOH HOH . N 5 HOH B 80 580 119 HOH HOH . N 5 HOH B 81 581 37 HOH HOH . N 5 HOH B 82 582 125 HOH HOH . N 5 HOH B 83 583 137 HOH HOH . N 5 HOH B 84 584 62 HOH HOH . N 5 HOH B 85 585 101 HOH HOH . N 5 HOH B 86 586 183 HOH HOH . N 5 HOH B 87 587 94 HOH HOH . N 5 HOH B 88 588 66 HOH HOH . N 5 HOH B 89 589 44 HOH HOH . N 5 HOH B 90 590 10 HOH HOH . N 5 HOH B 91 591 151 HOH HOH . N 5 HOH B 92 592 180 HOH HOH . N 5 HOH B 93 593 51 HOH HOH . N 5 HOH B 94 594 114 HOH HOH . N 5 HOH B 95 595 138 HOH HOH . N 5 HOH B 96 596 45 HOH HOH . N 5 HOH B 97 597 90 HOH HOH . N 5 HOH B 98 598 82 HOH HOH . N 5 HOH B 99 599 83 HOH HOH . N 5 HOH B 100 600 117 HOH HOH . N 5 HOH B 101 601 150 HOH HOH . N 5 HOH B 102 602 77 HOH HOH . N 5 HOH B 103 603 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . L 3 26.611 -18.438 -13.138 1 29.45 ? C1 MPD 403 B 1 HETATM 2 C C2 MPD . . . L 3 27.494 -19.327 -12.279 1 30.52 ? C2 MPD 403 B 1 HETATM 3 O O2 MPD . . . L 3 27.84 -18.68 -11.021 1 30.9 ? O2 MPD 403 B 1 HETATM 4 C CM MPD . . . L 3 26.583 -20.498 -11.966 1 26.85 ? CM MPD 403 B 1 HETATM 5 C C3 MPD . . . L 3 28.747 -19.854 -12.992 1 32.87 ? C3 MPD 403 B 1 HETATM 6 C C4 MPD . . . L 3 29.957 -18.93 -13.192 1 40.41 ? C4 MPD 403 B 1 HETATM 7 O O4 MPD . . . L 3 30.732 -19.349 -14.309 1 46.56 ? O4 MPD 403 B 1 HETATM 8 C C5 MPD . . . L 3 29.609 -17.518 -13.594 1 29.91 ? C5 MPD 403 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #