data_5HYO
#
_model_server_result.job_id            zsZR-HPEAheITZCieav9eA 
_model_server_result.datetime_utc      '2024-11-22 06:25:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5hyo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":406}' 
#
_entry.id    5HYO 
#
_exptl.entry_id    5HYO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5HYO 
_cell.length_a            58.586 
_cell.length_b            76.292 
_cell.length_c            119.169 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5HYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 L N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 257 n n 
C1 H11 MPD sing 258 n n 
C1 H12 MPD sing 259 n n 
C1 H13 MPD sing 260 n n 
C2 O2 MPD sing 261 n n 
C2 CM MPD sing 262 n n 
C2 C3 MPD sing 263 n n 
O2 HO2 MPD sing 264 n n 
CM HM1 MPD sing 265 n n 
CM HM2 MPD sing 266 n n 
CM HM3 MPD sing 267 n n 
C3 C4 MPD sing 268 n n 
C3 H31 MPD sing 269 n n 
C3 H32 MPD sing 270 n n 
C4 O4 MPD sing 271 n n 
C4 C5 MPD sing 272 n n 
C4 H4 MPD sing 273 n n 
O4 HO4 MPD sing 274 n n 
C5 H51 MPD sing 275 n n 
C5 H52 MPD sing 276 n n 
C5 H53 MPD sing 277 n n 
#
_atom_sites.entry_id                     5HYO 
_atom_sites.fract_transf_matrix[1][1]    0.017069 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013108 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008391 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IPA A 1 401 2 IPA IPA . 
D 2 IPA A 1 402 7 IPA IPA . 
E 2 IPA A 1 403 8 IPA IPA . 
F 2 IPA A 1 404 9 IPA IPA . 
G 2 IPA A 1 405 10 IPA IPA . 
H 3 MPD A 1 406 2 MPD MPD . 
I 4 DMS A 1 407 1 DMS DMS . 
J 2 IPA B 1 401 3 IPA IPA . 
K 2 IPA B 1 402 5 IPA IPA . 
L 3 MPD B 1 403 1 MPD MPD . 
M 5 HOH A 1 501 33 HOH HOH . 
M 5 HOH A 2 502 18 HOH HOH . 
M 5 HOH A 3 503 69 HOH HOH . 
M 5 HOH A 4 504 176 HOH HOH . 
M 5 HOH A 5 505 29 HOH HOH . 
M 5 HOH A 6 506 11 HOH HOH . 
M 5 HOH A 7 507 165 HOH HOH . 
M 5 HOH A 8 508 132 HOH HOH . 
M 5 HOH A 9 509 127 HOH HOH . 
M 5 HOH A 10 510 155 HOH HOH . 
M 5 HOH A 11 511 149 HOH HOH . 
M 5 HOH A 12 512 109 HOH HOH . 
M 5 HOH A 13 513 23 HOH HOH . 
M 5 HOH A 14 514 13 HOH HOH . 
M 5 HOH A 15 515 97 HOH HOH . 
M 5 HOH A 16 516 164 HOH HOH . 
M 5 HOH A 17 517 3 HOH HOH . 
M 5 HOH A 18 518 35 HOH HOH . 
M 5 HOH A 19 519 46 HOH HOH . 
M 5 HOH A 20 520 16 HOH HOH . 
M 5 HOH A 21 521 163 HOH HOH . 
M 5 HOH A 22 522 96 HOH HOH . 
M 5 HOH A 23 523 67 HOH HOH . 
M 5 HOH A 24 524 71 HOH HOH . 
M 5 HOH A 25 525 25 HOH HOH . 
M 5 HOH A 26 526 20 HOH HOH . 
M 5 HOH A 27 527 22 HOH HOH . 
M 5 HOH A 28 528 140 HOH HOH . 
M 5 HOH A 29 529 89 HOH HOH . 
M 5 HOH A 30 530 172 HOH HOH . 
M 5 HOH A 31 531 41 HOH HOH . 
M 5 HOH A 32 532 156 HOH HOH . 
M 5 HOH A 33 533 91 HOH HOH . 
M 5 HOH A 34 534 26 HOH HOH . 
M 5 HOH A 35 535 123 HOH HOH . 
M 5 HOH A 36 536 70 HOH HOH . 
M 5 HOH A 37 537 81 HOH HOH . 
M 5 HOH A 38 538 21 HOH HOH . 
M 5 HOH A 39 539 118 HOH HOH . 
M 5 HOH A 40 540 92 HOH HOH . 
M 5 HOH A 41 541 133 HOH HOH . 
M 5 HOH A 42 542 135 HOH HOH . 
M 5 HOH A 43 543 136 HOH HOH . 
M 5 HOH A 44 544 78 HOH HOH . 
M 5 HOH A 45 545 162 HOH HOH . 
M 5 HOH A 46 546 110 HOH HOH . 
M 5 HOH A 47 547 39 HOH HOH . 
M 5 HOH A 48 548 167 HOH HOH . 
M 5 HOH A 49 549 175 HOH HOH . 
M 5 HOH A 50 550 38 HOH HOH . 
M 5 HOH A 51 551 166 HOH HOH . 
M 5 HOH A 52 552 107 HOH HOH . 
M 5 HOH A 53 553 142 HOH HOH . 
M 5 HOH A 54 554 174 HOH HOH . 
M 5 HOH A 55 555 65 HOH HOH . 
M 5 HOH A 56 556 95 HOH HOH . 
M 5 HOH A 57 557 24 HOH HOH . 
M 5 HOH A 58 558 105 HOH HOH . 
M 5 HOH A 59 559 173 HOH HOH . 
M 5 HOH A 60 560 53 HOH HOH . 
M 5 HOH A 61 561 99 HOH HOH . 
M 5 HOH A 62 562 32 HOH HOH . 
M 5 HOH A 63 563 134 HOH HOH . 
M 5 HOH A 64 564 100 HOH HOH . 
M 5 HOH A 65 565 104 HOH HOH . 
M 5 HOH A 66 566 102 HOH HOH . 
M 5 HOH A 67 567 103 HOH HOH . 
M 5 HOH A 68 568 108 HOH HOH . 
M 5 HOH A 69 569 27 HOH HOH . 
M 5 HOH A 70 570 131 HOH HOH . 
M 5 HOH A 71 571 141 HOH HOH . 
M 5 HOH A 72 572 130 HOH HOH . 
M 5 HOH A 73 573 55 HOH HOH . 
M 5 HOH A 74 574 143 HOH HOH . 
M 5 HOH A 75 575 98 HOH HOH . 
M 5 HOH A 76 576 146 HOH HOH . 
M 5 HOH A 77 577 47 HOH HOH . 
M 5 HOH A 78 578 153 HOH HOH . 
M 5 HOH A 79 579 161 HOH HOH . 
M 5 HOH A 80 580 106 HOH HOH . 
N 5 HOH B 1 501 112 HOH HOH . 
N 5 HOH B 2 502 159 HOH HOH . 
N 5 HOH B 3 503 1 HOH HOH . 
N 5 HOH B 4 504 111 HOH HOH . 
N 5 HOH B 5 505 93 HOH HOH . 
N 5 HOH B 6 506 14 HOH HOH . 
N 5 HOH B 7 507 49 HOH HOH . 
N 5 HOH B 8 508 19 HOH HOH . 
N 5 HOH B 9 509 31 HOH HOH . 
N 5 HOH B 10 510 182 HOH HOH . 
N 5 HOH B 11 511 12 HOH HOH . 
N 5 HOH B 12 512 73 HOH HOH . 
N 5 HOH B 13 513 157 HOH HOH . 
N 5 HOH B 14 514 5 HOH HOH . 
N 5 HOH B 15 515 7 HOH HOH . 
N 5 HOH B 16 516 61 HOH HOH . 
N 5 HOH B 17 517 170 HOH HOH . 
N 5 HOH B 18 518 85 HOH HOH . 
N 5 HOH B 19 519 128 HOH HOH . 
N 5 HOH B 20 520 6 HOH HOH . 
N 5 HOH B 21 521 2 HOH HOH . 
N 5 HOH B 22 522 74 HOH HOH . 
N 5 HOH B 23 523 4 HOH HOH . 
N 5 HOH B 24 524 154 HOH HOH . 
N 5 HOH B 25 525 121 HOH HOH . 
N 5 HOH B 26 526 56 HOH HOH . 
N 5 HOH B 27 527 158 HOH HOH . 
N 5 HOH B 28 528 171 HOH HOH . 
N 5 HOH B 29 529 48 HOH HOH . 
N 5 HOH B 30 530 76 HOH HOH . 
N 5 HOH B 31 531 34 HOH HOH . 
N 5 HOH B 32 532 57 HOH HOH . 
N 5 HOH B 33 533 75 HOH HOH . 
N 5 HOH B 34 534 58 HOH HOH . 
N 5 HOH B 35 535 17 HOH HOH . 
N 5 HOH B 36 536 84 HOH HOH . 
N 5 HOH B 37 537 181 HOH HOH . 
N 5 HOH B 38 538 8 HOH HOH . 
N 5 HOH B 39 539 120 HOH HOH . 
N 5 HOH B 40 540 52 HOH HOH . 
N 5 HOH B 41 541 145 HOH HOH . 
N 5 HOH B 42 542 9 HOH HOH . 
N 5 HOH B 43 543 152 HOH HOH . 
N 5 HOH B 44 544 60 HOH HOH . 
N 5 HOH B 45 545 80 HOH HOH . 
N 5 HOH B 46 546 160 HOH HOH . 
N 5 HOH B 47 547 122 HOH HOH . 
N 5 HOH B 48 548 178 HOH HOH . 
N 5 HOH B 49 549 87 HOH HOH . 
N 5 HOH B 50 550 79 HOH HOH . 
N 5 HOH B 51 551 179 HOH HOH . 
N 5 HOH B 52 552 36 HOH HOH . 
N 5 HOH B 53 553 15 HOH HOH . 
N 5 HOH B 54 554 64 HOH HOH . 
N 5 HOH B 55 555 129 HOH HOH . 
N 5 HOH B 56 556 86 HOH HOH . 
N 5 HOH B 57 557 28 HOH HOH . 
N 5 HOH B 58 558 54 HOH HOH . 
N 5 HOH B 59 559 68 HOH HOH . 
N 5 HOH B 60 560 124 HOH HOH . 
N 5 HOH B 61 561 169 HOH HOH . 
N 5 HOH B 62 562 30 HOH HOH . 
N 5 HOH B 63 563 126 HOH HOH . 
N 5 HOH B 64 564 139 HOH HOH . 
N 5 HOH B 65 565 42 HOH HOH . 
N 5 HOH B 66 566 177 HOH HOH . 
N 5 HOH B 67 567 115 HOH HOH . 
N 5 HOH B 68 568 88 HOH HOH . 
N 5 HOH B 69 569 168 HOH HOH . 
N 5 HOH B 70 570 40 HOH HOH . 
N 5 HOH B 71 571 113 HOH HOH . 
N 5 HOH B 72 572 144 HOH HOH . 
N 5 HOH B 73 573 72 HOH HOH . 
N 5 HOH B 74 574 59 HOH HOH . 
N 5 HOH B 75 575 116 HOH HOH . 
N 5 HOH B 76 576 63 HOH HOH . 
N 5 HOH B 77 577 147 HOH HOH . 
N 5 HOH B 78 578 148 HOH HOH . 
N 5 HOH B 79 579 50 HOH HOH . 
N 5 HOH B 80 580 119 HOH HOH . 
N 5 HOH B 81 581 37 HOH HOH . 
N 5 HOH B 82 582 125 HOH HOH . 
N 5 HOH B 83 583 137 HOH HOH . 
N 5 HOH B 84 584 62 HOH HOH . 
N 5 HOH B 85 585 101 HOH HOH . 
N 5 HOH B 86 586 183 HOH HOH . 
N 5 HOH B 87 587 94 HOH HOH . 
N 5 HOH B 88 588 66 HOH HOH . 
N 5 HOH B 89 589 44 HOH HOH . 
N 5 HOH B 90 590 10 HOH HOH . 
N 5 HOH B 91 591 151 HOH HOH . 
N 5 HOH B 92 592 180 HOH HOH . 
N 5 HOH B 93 593 51 HOH HOH . 
N 5 HOH B 94 594 114 HOH HOH . 
N 5 HOH B 95 595 138 HOH HOH . 
N 5 HOH B 96 596 45 HOH HOH . 
N 5 HOH B 97 597 90 HOH HOH . 
N 5 HOH B 98 598 82 HOH HOH . 
N 5 HOH B 99 599 83 HOH HOH . 
N 5 HOH B 100 600 117 HOH HOH . 
N 5 HOH B 101 601 150 HOH HOH . 
N 5 HOH B 102 602 77 HOH HOH . 
N 5 HOH B 103 603 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . H 3 33.21 1.405 -11.87 1 61.08 ? C1 MPD 406 A 1 
HETATM 2 C C2 MPD . . . H 3 33.898 0.33 -11.023 1 64.92 ? C2 MPD 406 A 1 
HETATM 3 O O2 MPD . . . H 3 35.295 0.253 -11.416 1 67.41 ? O2 MPD 406 A 1 
HETATM 4 C CM MPD . . . H 3 33.866 0.691 -9.546 1 68.09 ? CM MPD 406 A 1 
HETATM 5 C C3 MPD . . . H 3 33.219 -1.026 -11.21 1 59.6 ? C3 MPD 406 A 1 
HETATM 6 C C4 MPD . . . H 3 34.141 -2.194 -10.861 1 60.85 ? C4 MPD 406 A 1 
HETATM 7 O O4 MPD . . . H 3 33.806 -2.673 -9.571 1 53.19 ? O4 MPD 406 A 1 
HETATM 8 C C5 MPD . . . H 3 34.07 -3.346 -11.873 1 57.6 ? C5 MPD 406 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#