data_5HZ8 # _model_server_result.job_id z5lUvc24gTYHK-GPyZYPGg _model_server_result.datetime_utc '2024-11-27 09:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5HZ8 # _exptl.entry_id 5HZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5HZ8 _cell.length_a 35.4 _cell.length_b 55.768 _cell.length_c 74.373 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 131 n n S C1 DMS sing 132 n n S C2 DMS sing 133 n n C1 H11 DMS sing 134 n n C1 H12 DMS sing 135 n n C1 H13 DMS sing 136 n n C2 H21 DMS sing 137 n n C2 H22 DMS sing 138 n n C2 H23 DMS sing 139 n n # _atom_sites.entry_id 5HZ8 _atom_sites.fract_transf_matrix[1][1] 0.028249 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013446 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 65Z A 1 200 200 65Z UNL . C 3 DMS A 1 201 201 DMS DMS . D 3 DMS A 1 202 202 DMS DMS . E 3 DMS A 1 203 203 DMS DMS . F 3 DMS A 1 204 204 DMS DMS . G 4 HOH A 1 301 217 HOH HOH . G 4 HOH A 2 302 97 HOH HOH . G 4 HOH A 3 303 242 HOH HOH . G 4 HOH A 4 304 156 HOH HOH . G 4 HOH A 5 305 253 HOH HOH . G 4 HOH A 6 306 159 HOH HOH . G 4 HOH A 7 307 221 HOH HOH . G 4 HOH A 8 308 162 HOH HOH . G 4 HOH A 9 309 173 HOH HOH . G 4 HOH A 10 310 115 HOH HOH . G 4 HOH A 11 311 239 HOH HOH . G 4 HOH A 12 312 65 HOH HOH . G 4 HOH A 13 313 137 HOH HOH . G 4 HOH A 14 314 148 HOH HOH . G 4 HOH A 15 315 23 HOH HOH . G 4 HOH A 16 316 44 HOH HOH . G 4 HOH A 17 317 220 HOH HOH . G 4 HOH A 18 318 37 HOH HOH . G 4 HOH A 19 319 198 HOH HOH . G 4 HOH A 20 320 251 HOH HOH . G 4 HOH A 21 321 247 HOH HOH . G 4 HOH A 22 322 102 HOH HOH . G 4 HOH A 23 323 36 HOH HOH . G 4 HOH A 24 324 111 HOH HOH . G 4 HOH A 25 325 101 HOH HOH . G 4 HOH A 26 326 133 HOH HOH . G 4 HOH A 27 327 40 HOH HOH . G 4 HOH A 28 328 181 HOH HOH . G 4 HOH A 29 329 149 HOH HOH . G 4 HOH A 30 330 144 HOH HOH . G 4 HOH A 31 331 193 HOH HOH . G 4 HOH A 32 332 151 HOH HOH . G 4 HOH A 33 333 90 HOH HOH . G 4 HOH A 34 334 152 HOH HOH . G 4 HOH A 35 335 64 HOH HOH . G 4 HOH A 36 336 150 HOH HOH . G 4 HOH A 37 337 116 HOH HOH . G 4 HOH A 38 338 14 HOH HOH . G 4 HOH A 39 339 53 HOH HOH . G 4 HOH A 40 340 73 HOH HOH . G 4 HOH A 41 341 59 HOH HOH . G 4 HOH A 42 342 32 HOH HOH . G 4 HOH A 43 343 186 HOH HOH . G 4 HOH A 44 344 50 HOH HOH . G 4 HOH A 45 345 113 HOH HOH . G 4 HOH A 46 346 132 HOH HOH . G 4 HOH A 47 347 6 HOH HOH . G 4 HOH A 48 348 125 HOH HOH . G 4 HOH A 49 349 11 HOH HOH . G 4 HOH A 50 350 175 HOH HOH . G 4 HOH A 51 351 38 HOH HOH . G 4 HOH A 52 352 129 HOH HOH . G 4 HOH A 53 353 112 HOH HOH . G 4 HOH A 54 354 142 HOH HOH . G 4 HOH A 55 355 67 HOH HOH . G 4 HOH A 56 356 94 HOH HOH . G 4 HOH A 57 357 68 HOH HOH . G 4 HOH A 58 358 106 HOH HOH . G 4 HOH A 59 359 87 HOH HOH . G 4 HOH A 60 360 62 HOH HOH . G 4 HOH A 61 361 98 HOH HOH . G 4 HOH A 62 362 237 HOH HOH . G 4 HOH A 63 363 185 HOH HOH . G 4 HOH A 64 364 49 HOH HOH . G 4 HOH A 65 365 16 HOH HOH . G 4 HOH A 66 366 201 HOH HOH . G 4 HOH A 67 367 145 HOH HOH . G 4 HOH A 68 368 163 HOH HOH . G 4 HOH A 69 369 222 HOH HOH . G 4 HOH A 70 370 240 HOH HOH . G 4 HOH A 71 371 1 HOH HOH . G 4 HOH A 72 372 99 HOH HOH . G 4 HOH A 73 373 86 HOH HOH . G 4 HOH A 74 374 58 HOH HOH . G 4 HOH A 75 375 233 HOH HOH . G 4 HOH A 76 376 20 HOH HOH . G 4 HOH A 77 377 76 HOH HOH . G 4 HOH A 78 378 77 HOH HOH . G 4 HOH A 79 379 154 HOH HOH . G 4 HOH A 80 380 255 HOH HOH . G 4 HOH A 81 381 229 HOH HOH . G 4 HOH A 82 382 19 HOH HOH . G 4 HOH A 83 383 130 HOH HOH . G 4 HOH A 84 384 93 HOH HOH . G 4 HOH A 85 385 167 HOH HOH . G 4 HOH A 86 386 84 HOH HOH . G 4 HOH A 87 387 4 HOH HOH . G 4 HOH A 88 388 25 HOH HOH . G 4 HOH A 89 389 83 HOH HOH . G 4 HOH A 90 390 56 HOH HOH . G 4 HOH A 91 391 61 HOH HOH . G 4 HOH A 92 392 8 HOH HOH . G 4 HOH A 93 393 179 HOH HOH . G 4 HOH A 94 394 147 HOH HOH . G 4 HOH A 95 395 57 HOH HOH . G 4 HOH A 96 396 128 HOH HOH . G 4 HOH A 97 397 15 HOH HOH . G 4 HOH A 98 398 29 HOH HOH . G 4 HOH A 99 399 136 HOH HOH . G 4 HOH A 100 400 55 HOH HOH . G 4 HOH A 101 401 164 HOH HOH . G 4 HOH A 102 402 160 HOH HOH . G 4 HOH A 103 403 72 HOH HOH . G 4 HOH A 104 404 169 HOH HOH . G 4 HOH A 105 405 33 HOH HOH . G 4 HOH A 106 406 30 HOH HOH . G 4 HOH A 107 407 161 HOH HOH . G 4 HOH A 108 408 192 HOH HOH . G 4 HOH A 109 409 2 HOH HOH . G 4 HOH A 110 410 196 HOH HOH . G 4 HOH A 111 411 135 HOH HOH . G 4 HOH A 112 412 66 HOH HOH . G 4 HOH A 113 413 7 HOH HOH . G 4 HOH A 114 414 22 HOH HOH . G 4 HOH A 115 415 244 HOH HOH . G 4 HOH A 116 416 182 HOH HOH . G 4 HOH A 117 417 200 HOH HOH . G 4 HOH A 118 418 146 HOH HOH . G 4 HOH A 119 419 10 HOH HOH . G 4 HOH A 120 420 78 HOH HOH . G 4 HOH A 121 421 69 HOH HOH . G 4 HOH A 122 422 51 HOH HOH . G 4 HOH A 123 423 194 HOH HOH . G 4 HOH A 124 424 21 HOH HOH . G 4 HOH A 125 425 9 HOH HOH . G 4 HOH A 126 426 178 HOH HOH . G 4 HOH A 127 427 134 HOH HOH . G 4 HOH A 128 428 243 HOH HOH . G 4 HOH A 129 429 177 HOH HOH . G 4 HOH A 130 430 43 HOH HOH . G 4 HOH A 131 431 88 HOH HOH . G 4 HOH A 132 432 236 HOH HOH . G 4 HOH A 133 433 153 HOH HOH . G 4 HOH A 134 434 79 HOH HOH . G 4 HOH A 135 435 28 HOH HOH . G 4 HOH A 136 436 74 HOH HOH . G 4 HOH A 137 437 103 HOH HOH . G 4 HOH A 138 438 35 HOH HOH . G 4 HOH A 139 439 48 HOH HOH . G 4 HOH A 140 440 63 HOH HOH . G 4 HOH A 141 441 12 HOH HOH . G 4 HOH A 142 442 95 HOH HOH . G 4 HOH A 143 443 91 HOH HOH . G 4 HOH A 144 444 27 HOH HOH . G 4 HOH A 145 445 107 HOH HOH . G 4 HOH A 146 446 31 HOH HOH . G 4 HOH A 147 447 157 HOH HOH . G 4 HOH A 148 448 5 HOH HOH . G 4 HOH A 149 449 24 HOH HOH . G 4 HOH A 150 450 166 HOH HOH . G 4 HOH A 151 451 85 HOH HOH . G 4 HOH A 152 452 34 HOH HOH . G 4 HOH A 153 453 245 HOH HOH . G 4 HOH A 154 454 42 HOH HOH . G 4 HOH A 155 455 202 HOH HOH . G 4 HOH A 156 456 110 HOH HOH . G 4 HOH A 157 457 158 HOH HOH . G 4 HOH A 158 458 214 HOH HOH . G 4 HOH A 159 459 195 HOH HOH . G 4 HOH A 160 460 47 HOH HOH . G 4 HOH A 161 461 71 HOH HOH . G 4 HOH A 162 462 17 HOH HOH . G 4 HOH A 163 463 13 HOH HOH . G 4 HOH A 164 464 165 HOH HOH . G 4 HOH A 165 465 46 HOH HOH . G 4 HOH A 166 466 45 HOH HOH . G 4 HOH A 167 467 114 HOH HOH . G 4 HOH A 168 468 52 HOH HOH . G 4 HOH A 169 469 41 HOH HOH . G 4 HOH A 170 470 232 HOH HOH . G 4 HOH A 171 471 191 HOH HOH . G 4 HOH A 172 472 70 HOH HOH . G 4 HOH A 173 473 168 HOH HOH . G 4 HOH A 174 474 18 HOH HOH . G 4 HOH A 175 475 250 HOH HOH . G 4 HOH A 176 476 121 HOH HOH . G 4 HOH A 177 477 60 HOH HOH . G 4 HOH A 178 478 3 HOH HOH . G 4 HOH A 179 479 131 HOH HOH . G 4 HOH A 180 480 54 HOH HOH . G 4 HOH A 181 481 190 HOH HOH . G 4 HOH A 182 482 108 HOH HOH . G 4 HOH A 183 483 170 HOH HOH . G 4 HOH A 184 484 171 HOH HOH . G 4 HOH A 185 485 104 HOH HOH . G 4 HOH A 186 486 241 HOH HOH . G 4 HOH A 187 487 180 HOH HOH . G 4 HOH A 188 488 230 HOH HOH . G 4 HOH A 189 489 252 HOH HOH . G 4 HOH A 190 490 210 HOH HOH . G 4 HOH A 191 491 246 HOH HOH . G 4 HOH A 192 492 184 HOH HOH . G 4 HOH A 193 493 248 HOH HOH . G 4 HOH A 194 494 197 HOH HOH . G 4 HOH A 195 495 254 HOH HOH . G 4 HOH A 196 496 249 HOH HOH . G 4 HOH A 197 497 258 HOH HOH . G 4 HOH A 198 498 105 HOH HOH . G 4 HOH A 199 499 187 HOH HOH . G 4 HOH A 200 500 138 HOH HOH . G 4 HOH A 201 501 75 HOH HOH . G 4 HOH A 202 502 208 HOH HOH . G 4 HOH A 203 503 226 HOH HOH . G 4 HOH A 204 504 174 HOH HOH . G 4 HOH A 205 505 126 HOH HOH . G 4 HOH A 206 506 127 HOH HOH . G 4 HOH A 207 507 188 HOH HOH . G 4 HOH A 208 508 227 HOH HOH . G 4 HOH A 209 509 120 HOH HOH . G 4 HOH A 210 510 122 HOH HOH . G 4 HOH A 211 511 155 HOH HOH . G 4 HOH A 212 512 256 HOH HOH . G 4 HOH A 213 513 224 HOH HOH . G 4 HOH A 214 514 81 HOH HOH . G 4 HOH A 215 515 117 HOH HOH . G 4 HOH A 216 516 183 HOH HOH . G 4 HOH A 217 517 216 HOH HOH . G 4 HOH A 218 518 124 HOH HOH . G 4 HOH A 219 519 140 HOH HOH . G 4 HOH A 220 520 259 HOH HOH . G 4 HOH A 221 521 139 HOH HOH . G 4 HOH A 222 522 235 HOH HOH . G 4 HOH A 223 523 118 HOH HOH . G 4 HOH A 224 524 89 HOH HOH . G 4 HOH A 225 525 205 HOH HOH . G 4 HOH A 226 526 119 HOH HOH . G 4 HOH A 227 527 123 HOH HOH . G 4 HOH A 228 528 206 HOH HOH . G 4 HOH A 229 529 82 HOH HOH . G 4 HOH A 230 530 80 HOH HOH . G 4 HOH A 231 531 176 HOH HOH . G 4 HOH A 232 532 109 HOH HOH . G 4 HOH A 233 533 213 HOH HOH . G 4 HOH A 234 534 92 HOH HOH . G 4 HOH A 235 535 257 HOH HOH . G 4 HOH A 236 536 143 HOH HOH . G 4 HOH A 237 537 207 HOH HOH . G 4 HOH A 238 538 39 HOH HOH . G 4 HOH A 239 539 225 HOH HOH . G 4 HOH A 240 540 96 HOH HOH . G 4 HOH A 241 541 238 HOH HOH . G 4 HOH A 242 542 219 HOH HOH . G 4 HOH A 243 543 211 HOH HOH . G 4 HOH A 244 544 26 HOH HOH . G 4 HOH A 245 545 203 HOH HOH . G 4 HOH A 246 546 212 HOH HOH . G 4 HOH A 247 547 199 HOH HOH . G 4 HOH A 248 548 223 HOH HOH . G 4 HOH A 249 549 100 HOH HOH . G 4 HOH A 250 550 231 HOH HOH . G 4 HOH A 251 551 204 HOH HOH . G 4 HOH A 252 552 172 HOH HOH . G 4 HOH A 253 553 228 HOH HOH . G 4 HOH A 254 554 141 HOH HOH . G 4 HOH A 255 555 215 HOH HOH . G 4 HOH A 256 556 234 HOH HOH . G 4 HOH A 257 557 189 HOH HOH . G 4 HOH A 258 558 209 HOH HOH . G 4 HOH A 259 559 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 19.087 -14.57 -22.178 1 17.17 ? S DMS 202 A 1 HETATM 2 O O DMS . . . D 3 17.899 -15.213 -21.379 1 14.78 ? O DMS 202 A 1 HETATM 3 C C1 DMS . . . D 3 18.902 -12.819 -21.758 1 17.74 ? C1 DMS 202 A 1 HETATM 4 C C2 DMS . . . D 3 20.582 -15.007 -21.273 1 20.05 ? C2 DMS 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #