data_5HZE # _model_server_result.job_id rxnq2ZO2r-rAyctOeIoyrg _model_server_result.datetime_utc '2024-12-21 16:11:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5hze # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5HZE # _exptl.entry_id 5HZE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.431 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,4R,8S,9S,11E)-8,9,16-trihydroxy-3,4-dimethyl-14-(methylamino)-3,4,5,6,9,10-hexahydro-1H-2-benzoxacyclotetradecine-1,7(8H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5HZE _cell.length_a 77.118 _cell.length_b 77.118 _cell.length_c 222.064 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5HZE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 172 A CYS 207 1_555 B CAT E62 . A E62 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.711 ? metalc ? metalc1 A OD1 ASP 30 A ASP 65 1_555 C MG MG . A MG 402 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc2 A OD2 ASP 30 A ASP 65 1_555 C MG MG . A MG 402 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc3 A OD1 ASP 31 A ASP 66 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc4 A OD1 ASP 31 A ASP 66 1_555 D MG MG . A MG 403 12_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C20 H27 N O6' _chem_comp.formula_weight 377.431 _chem_comp.id E62 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,4R,8S,9S,11E)-8,9,16-trihydroxy-3,4-dimethyl-14-(methylamino)-3,4,5,6,9,10-hexahydro-1H-2-benzoxacyclotetradecine-1,7(8H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAN CAM E62 sing 83 n n CAS CAT E62 sing 84 n n CAS CAQ E62 sing 85 n n CAO CAM E62 sing 86 n n CAO OAP E62 sing 87 n n CAO CAQ E62 sing 88 n n CAM CAL E62 sing 89 n n CAT CAU E62 sing 90 n n CAQ OAR E62 doub 91 n n CAK CAL E62 sing 92 n n CAK CAJ E62 doub 93 e n NAB CAC E62 sing 94 n n NAB CAA E62 sing 95 n n CAD CAC E62 doub 96 n y CAD CAE E62 sing 97 n y CAC CAI E62 sing 98 n y CAE OAF E62 sing 99 n n CAE CAG E62 doub 100 n y CAI CAH E62 doub 101 n y CAH CAG E62 sing 102 n y CAH CAJ E62 sing 103 n n CAG CAZ E62 sing 104 n n OBA CAZ E62 doub 105 n n CAZ OAY E62 sing 106 n n CAU CAW E62 sing 107 n n CAU CAV E62 sing 108 n n OAY CAW E62 sing 109 n n CAW CAX E62 sing 110 n n CAV H1 E62 sing 111 n n CAV H2 E62 sing 112 n n CAV H3 E62 sing 113 n n CAU H4 E62 sing 114 n n CAT H5 E62 sing 115 n n CAT H6 E62 sing 116 n n CAS H7 E62 sing 117 n n CAS H8 E62 sing 118 n n CAO H9 E62 sing 119 n n OAP H10 E62 sing 120 n n CAM H11 E62 sing 121 n n OAN H12 E62 sing 122 n n CAL H13 E62 sing 123 n n CAL H14 E62 sing 124 n n CAK H15 E62 sing 125 n n CAJ H16 E62 sing 126 n n CAI H17 E62 sing 127 n n NAB H18 E62 sing 128 n n CAA H19 E62 sing 129 n n CAA H20 E62 sing 130 n n CAA H21 E62 sing 131 n n CAD H22 E62 sing 132 n n OAF H23 E62 sing 133 n n CAW H24 E62 sing 134 n n CAX H25 E62 sing 135 n n CAX H26 E62 sing 136 n n CAX H27 E62 sing 137 n n # _atom_sites.entry_id 5HZE _atom_sites.fract_transf_matrix[1][1] 0.012967 _atom_sites.fract_transf_matrix[1][2] 0.007487 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E62 A 1 401 1 E62 DRG . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 2 MG MG . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 31 HOH HOH . E 4 HOH A 3 503 16 HOH HOH . E 4 HOH A 4 504 14 HOH HOH . E 4 HOH A 5 505 17 HOH HOH . E 4 HOH A 6 506 19 HOH HOH . E 4 HOH A 7 507 20 HOH HOH . E 4 HOH A 8 508 24 HOH HOH . E 4 HOH A 9 509 18 HOH HOH . E 4 HOH A 10 510 33 HOH HOH . E 4 HOH A 11 511 32 HOH HOH . E 4 HOH A 12 512 7 HOH HOH . E 4 HOH A 13 513 4 HOH HOH . E 4 HOH A 14 514 10 HOH HOH . E 4 HOH A 15 515 22 HOH HOH . E 4 HOH A 16 516 8 HOH HOH . E 4 HOH A 17 517 9 HOH HOH . E 4 HOH A 18 518 3 HOH HOH . E 4 HOH A 19 519 6 HOH HOH . E 4 HOH A 20 520 30 HOH HOH . E 4 HOH A 21 521 28 HOH HOH . E 4 HOH A 22 522 11 HOH HOH . E 4 HOH A 23 523 13 HOH HOH . E 4 HOH A 24 524 5 HOH HOH . E 4 HOH A 25 525 12 HOH HOH . E 4 HOH A 26 526 15 HOH HOH . E 4 HOH A 27 527 2 HOH HOH . E 4 HOH A 28 528 34 HOH HOH . E 4 HOH A 29 529 25 HOH HOH . E 4 HOH A 30 530 29 HOH HOH . E 4 HOH A 31 531 21 HOH HOH . E 4 HOH A 32 532 23 HOH HOH . E 4 HOH A 33 533 27 HOH HOH . E 4 HOH A 34 534 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAV E62 . . . B 2 -16.219 32.808 -1.849 1 50.51 ? CAV E62 401 A 1 HETATM 2 C CAU E62 . . . B 2 -16.896 31.461 -2.264 1 51.74 ? CAU E62 401 A 1 HETATM 3 C CAT E62 . . . B 2 -16.711 31.117 -3.853 1 58.81 ? CAT E62 401 A 1 HETATM 4 C CAS E62 . . . B 2 -15.336 30.832 -4.475 1 55.94 ? CAS E62 401 A 1 HETATM 5 C CAQ E62 . . . B 2 -14.592 29.773 -3.791 1 65.03 ? CAQ E62 401 A 1 HETATM 6 O OAR E62 . . . B 2 -13.888 30.069 -2.802 1 57.74 ? OAR E62 401 A 1 HETATM 7 C CAO E62 . . . B 2 -14.472 28.452 -4.378 1 56.48 ? CAO E62 401 A 1 HETATM 8 O OAP E62 . . . B 2 -13.367 27.747 -3.814 1 59.31 ? OAP E62 401 A 1 HETATM 9 C CAM E62 . . . B 2 -15.681 27.491 -4.31 1 58.87 ? CAM E62 401 A 1 HETATM 10 O OAN E62 . . . B 2 -15.429 26.304 -5.13 1 54 ? OAN E62 401 A 1 HETATM 11 C CAL E62 . . . B 2 -15.982 26.936 -2.922 1 50.97 ? CAL E62 401 A 1 HETATM 12 C CAK E62 . . . B 2 -17.379 26.655 -3.093 1 48.3 ? CAK E62 401 A 1 HETATM 13 C CAJ E62 . . . B 2 -18.322 27.516 -2.476 1 45.59 ? CAJ E62 401 A 1 HETATM 14 C CAH E62 . . . B 2 -19.714 27.382 -2.579 1 46.83 ? CAH E62 401 A 1 HETATM 15 C CAI E62 . . . B 2 -20.288 26.095 -2.703 1 42.71 ? CAI E62 401 A 1 HETATM 16 C CAC E62 . . . B 2 -21.673 25.908 -2.783 1 46.81 ? CAC E62 401 A 1 HETATM 17 N NAB E62 . . . B 2 -22.129 24.642 -2.887 1 46.44 ? NAB E62 401 A 1 HETATM 18 C CAA E62 . . . B 2 -23.527 24.247 -2.621 1 42.87 ? CAA E62 401 A 1 HETATM 19 C CAD E62 . . . B 2 -22.492 27.044 -2.795 1 44.23 ? CAD E62 401 A 1 HETATM 20 C CAE E62 . . . B 2 -21.919 28.307 -2.711 1 42.24 ? CAE E62 401 A 1 HETATM 21 O OAF E62 . . . B 2 -22.703 29.419 -2.679 1 47.48 ? OAF E62 401 A 1 HETATM 22 C CAG E62 . . . B 2 -20.565 28.519 -2.568 1 44.35 ? CAG E62 401 A 1 HETATM 23 C CAZ E62 . . . B 2 -20.144 29.863 -2.45 1 44.7 ? CAZ E62 401 A 1 HETATM 24 O OBA E62 . . . B 2 -20.931 30.811 -2.516 1 46.2 ? OBA E62 401 A 1 HETATM 25 O OAY E62 . . . B 2 -18.834 30.047 -2.205 1 45.89 ? OAY E62 401 A 1 HETATM 26 C CAW E62 . . . B 2 -18.385 31.373 -1.878 1 49 ? CAW E62 401 A 1 HETATM 27 C CAX E62 . . . B 2 -18.594 31.484 -0.371 1 49.05 ? CAX E62 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #